uk.ac.manchester.cs.owl.owlapi.Internals Maven / Gradle / Ivy
/* This file is part of the OWL API.
* The contents of this file are subject to the LGPL License, Version 3.0.
* Copyright 2014, The University of Manchester
*
* This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
* This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
* You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.
*
* Alternatively, the contents of this file may be used under the terms of the Apache License, Version 2.0 in which case, the provisions of the Apache License Version 2.0 are applicable instead of those above.
* Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at
* http://www.apache.org/licenses/LICENSE-2.0
* Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. */
package uk.ac.manchester.cs.owl.owlapi;
import static org.semanticweb.owlapi.model.AxiomType.ANNOTATION_ASSERTION;
import static org.semanticweb.owlapi.model.AxiomType.ASYMMETRIC_OBJECT_PROPERTY;
import static org.semanticweb.owlapi.model.AxiomType.CLASS_ASSERTION;
import static org.semanticweb.owlapi.model.AxiomType.DATA_PROPERTY_ASSERTION;
import static org.semanticweb.owlapi.model.AxiomType.DATA_PROPERTY_DOMAIN;
import static org.semanticweb.owlapi.model.AxiomType.DATA_PROPERTY_RANGE;
import static org.semanticweb.owlapi.model.AxiomType.DIFFERENT_INDIVIDUALS;
import static org.semanticweb.owlapi.model.AxiomType.DISJOINT_CLASSES;
import static org.semanticweb.owlapi.model.AxiomType.DISJOINT_DATA_PROPERTIES;
import static org.semanticweb.owlapi.model.AxiomType.DISJOINT_OBJECT_PROPERTIES;
import static org.semanticweb.owlapi.model.AxiomType.DISJOINT_UNION;
import static org.semanticweb.owlapi.model.AxiomType.EQUIVALENT_CLASSES;
import static org.semanticweb.owlapi.model.AxiomType.EQUIVALENT_DATA_PROPERTIES;
import static org.semanticweb.owlapi.model.AxiomType.EQUIVALENT_OBJECT_PROPERTIES;
import static org.semanticweb.owlapi.model.AxiomType.FUNCTIONAL_DATA_PROPERTY;
import static org.semanticweb.owlapi.model.AxiomType.FUNCTIONAL_OBJECT_PROPERTY;
import static org.semanticweb.owlapi.model.AxiomType.HAS_KEY;
import static org.semanticweb.owlapi.model.AxiomType.INVERSE_FUNCTIONAL_OBJECT_PROPERTY;
import static org.semanticweb.owlapi.model.AxiomType.INVERSE_OBJECT_PROPERTIES;
import static org.semanticweb.owlapi.model.AxiomType.IRREFLEXIVE_OBJECT_PROPERTY;
import static org.semanticweb.owlapi.model.AxiomType.LOGICAL_AXIOM_TYPES;
import static org.semanticweb.owlapi.model.AxiomType.NEGATIVE_DATA_PROPERTY_ASSERTION;
import static org.semanticweb.owlapi.model.AxiomType.NEGATIVE_OBJECT_PROPERTY_ASSERTION;
import static org.semanticweb.owlapi.model.AxiomType.OBJECT_PROPERTY_ASSERTION;
import static org.semanticweb.owlapi.model.AxiomType.OBJECT_PROPERTY_DOMAIN;
import static org.semanticweb.owlapi.model.AxiomType.OBJECT_PROPERTY_RANGE;
import static org.semanticweb.owlapi.model.AxiomType.REFLEXIVE_OBJECT_PROPERTY;
import static org.semanticweb.owlapi.model.AxiomType.SAME_INDIVIDUAL;
import static org.semanticweb.owlapi.model.AxiomType.SUBCLASS_OF;
import static org.semanticweb.owlapi.model.AxiomType.SUB_DATA_PROPERTY;
import static org.semanticweb.owlapi.model.AxiomType.SUB_OBJECT_PROPERTY;
import static org.semanticweb.owlapi.model.AxiomType.SYMMETRIC_OBJECT_PROPERTY;
import static org.semanticweb.owlapi.model.AxiomType.TRANSITIVE_OBJECT_PROPERTY;
import static org.semanticweb.owlapi.util.CollectionFactory.createSyncSet;
import static org.semanticweb.owlapi.util.OWLAPIPreconditions.checkNotNull;
import static org.semanticweb.owlapi.util.OWLAPIPreconditions.emptyOptional;
import static org.semanticweb.owlapi.util.OWLAPIPreconditions.optional;
import static org.semanticweb.owlapi.util.OWLAPIStreamUtils.asList;
import static uk.ac.manchester.cs.owl.owlapi.InitVisitorFactory.ANNOTSUPERNAMED;
import static uk.ac.manchester.cs.owl.owlapi.InitVisitorFactory.CLASSCOLLECTIONS;
import static uk.ac.manchester.cs.owl.owlapi.InitVisitorFactory.CLASSEXPRESSIONS;
import static uk.ac.manchester.cs.owl.owlapi.InitVisitorFactory.CLASSSUBNAMED;
import static uk.ac.manchester.cs.owl.owlapi.InitVisitorFactory.CLASSSUPERNAMED;
import static uk.ac.manchester.cs.owl.owlapi.InitVisitorFactory.DPCOLLECTIONS;
import static uk.ac.manchester.cs.owl.owlapi.InitVisitorFactory.DPSUBNAMED;
import static uk.ac.manchester.cs.owl.owlapi.InitVisitorFactory.DPSUPERNAMED;
import static uk.ac.manchester.cs.owl.owlapi.InitVisitorFactory.ICOLLECTIONS;
import static uk.ac.manchester.cs.owl.owlapi.InitVisitorFactory.INDIVIDUALSUBNAMED;
import static uk.ac.manchester.cs.owl.owlapi.InitVisitorFactory.OPCOLLECTIONS;
import static uk.ac.manchester.cs.owl.owlapi.InitVisitorFactory.OPSUBNAMED;
import static uk.ac.manchester.cs.owl.owlapi.InitVisitorFactory.OPSUPERNAMED;
import java.io.IOException;
import java.io.ObjectInputStream;
import java.io.ObjectOutputStream;
import java.io.Serializable;
import java.util.ArrayList;
import java.util.Collection;
import java.util.List;
import java.util.Optional;
import java.util.Set;
import java.util.concurrent.atomic.AtomicBoolean;
import java.util.stream.Stream;
import javax.annotation.Nullable;
import org.semanticweb.owlapi.model.AxiomType;
import org.semanticweb.owlapi.model.EntityType;
import org.semanticweb.owlapi.model.IRI;
import org.semanticweb.owlapi.model.OWLAnnotation;
import org.semanticweb.owlapi.model.OWLAnnotationAssertionAxiom;
import org.semanticweb.owlapi.model.OWLAnnotationProperty;
import org.semanticweb.owlapi.model.OWLAnnotationSubject;
import org.semanticweb.owlapi.model.OWLAnonymousIndividual;
import org.semanticweb.owlapi.model.OWLAsymmetricObjectPropertyAxiom;
import org.semanticweb.owlapi.model.OWLAxiom;
import org.semanticweb.owlapi.model.OWLAxiomVisitor;
import org.semanticweb.owlapi.model.OWLAxiomVisitorEx;
import org.semanticweb.owlapi.model.OWLClass;
import org.semanticweb.owlapi.model.OWLClassAssertionAxiom;
import org.semanticweb.owlapi.model.OWLClassAxiom;
import org.semanticweb.owlapi.model.OWLClassExpression;
import org.semanticweb.owlapi.model.OWLDataProperty;
import org.semanticweb.owlapi.model.OWLDataPropertyAssertionAxiom;
import org.semanticweb.owlapi.model.OWLDataPropertyDomainAxiom;
import org.semanticweb.owlapi.model.OWLDataPropertyExpression;
import org.semanticweb.owlapi.model.OWLDataPropertyRangeAxiom;
import org.semanticweb.owlapi.model.OWLDatatype;
import org.semanticweb.owlapi.model.OWLDeclarationAxiom;
import org.semanticweb.owlapi.model.OWLDifferentIndividualsAxiom;
import org.semanticweb.owlapi.model.OWLDisjointClassesAxiom;
import org.semanticweb.owlapi.model.OWLDisjointDataPropertiesAxiom;
import org.semanticweb.owlapi.model.OWLDisjointObjectPropertiesAxiom;
import org.semanticweb.owlapi.model.OWLDisjointUnionAxiom;
import org.semanticweb.owlapi.model.OWLEntity;
import org.semanticweb.owlapi.model.OWLEntityVisitorEx;
import org.semanticweb.owlapi.model.OWLEquivalentClassesAxiom;
import org.semanticweb.owlapi.model.OWLEquivalentDataPropertiesAxiom;
import org.semanticweb.owlapi.model.OWLEquivalentObjectPropertiesAxiom;
import org.semanticweb.owlapi.model.OWLFunctionalDataPropertyAxiom;
import org.semanticweb.owlapi.model.OWLFunctionalObjectPropertyAxiom;
import org.semanticweb.owlapi.model.OWLHasKeyAxiom;
import org.semanticweb.owlapi.model.OWLImportsDeclaration;
import org.semanticweb.owlapi.model.OWLIndividual;
import org.semanticweb.owlapi.model.OWLInverseFunctionalObjectPropertyAxiom;
import org.semanticweb.owlapi.model.OWLInverseObjectPropertiesAxiom;
import org.semanticweb.owlapi.model.OWLIrreflexiveObjectPropertyAxiom;
import org.semanticweb.owlapi.model.OWLLogicalAxiom;
import org.semanticweb.owlapi.model.OWLNamedIndividual;
import org.semanticweb.owlapi.model.OWLNegativeDataPropertyAssertionAxiom;
import org.semanticweb.owlapi.model.OWLNegativeObjectPropertyAssertionAxiom;
import org.semanticweb.owlapi.model.OWLObject;
import org.semanticweb.owlapi.model.OWLObjectProperty;
import org.semanticweb.owlapi.model.OWLObjectPropertyAssertionAxiom;
import org.semanticweb.owlapi.model.OWLObjectPropertyDomainAxiom;
import org.semanticweb.owlapi.model.OWLObjectPropertyExpression;
import org.semanticweb.owlapi.model.OWLObjectPropertyRangeAxiom;
import org.semanticweb.owlapi.model.OWLReflexiveObjectPropertyAxiom;
import org.semanticweb.owlapi.model.OWLSameIndividualAxiom;
import org.semanticweb.owlapi.model.OWLSubClassOfAxiom;
import org.semanticweb.owlapi.model.OWLSubDataPropertyOfAxiom;
import org.semanticweb.owlapi.model.OWLSubObjectPropertyOfAxiom;
import org.semanticweb.owlapi.model.OWLSubPropertyChainOfAxiom;
import org.semanticweb.owlapi.model.OWLSymmetricObjectPropertyAxiom;
import org.semanticweb.owlapi.model.OWLTransitiveObjectPropertyAxiom;
import org.semanticweb.owlapi.model.parameters.Navigation;
import org.semanticweb.owlapi.search.Filters;
import org.semanticweb.owlapi.util.AbstractCollector;
import org.semanticweb.owlapi.util.OWLAxiomSearchFilter;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
* @author ignazio
*/
public class Internals implements Serializable {
protected static final Logger LOGGER = LoggerFactory.getLogger(Internals.class);
//@formatter:off
private final AddAxiomVisitor addChangeVisitor = new AddAxiomVisitor();
private final RemoveAxiomVisitor removeChangeVisitor = new RemoveAxiomVisitor();
private final ReferenceChecker refChecker = new ReferenceChecker();
private final ReferencedAxiomsCollector refAxiomsCollector = new ReferencedAxiomsCollector();
protected transient MapPointer classAssertionAxiomsByClass = buildLazy(CLASS_ASSERTION, CLASSEXPRESSIONS, OWLClassAssertionAxiom.class);
protected transient MapPointer annotationAssertionAxiomsBySubject = buildLazy(ANNOTATION_ASSERTION, ANNOTSUPERNAMED, OWLAnnotationAssertionAxiom.class);
protected transient MapPointer subClassAxiomsBySubPosition = buildLazy(SUBCLASS_OF, CLASSSUBNAMED, OWLSubClassOfAxiom.class);
protected transient MapPointer subClassAxiomsBySuperPosition = buildLazy(SUBCLASS_OF, CLASSSUPERNAMED, OWLSubClassOfAxiom.class);
protected transient MapPointer objectSubPropertyAxiomsBySubPosition = buildLazy(SUB_OBJECT_PROPERTY, OPSUBNAMED, OWLSubObjectPropertyOfAxiom.class);
protected transient MapPointer objectSubPropertyAxiomsBySuperPosition = buildLazy(SUB_OBJECT_PROPERTY, OPSUPERNAMED, OWLSubObjectPropertyOfAxiom.class);
protected transient MapPointer dataSubPropertyAxiomsBySubPosition = buildLazy(SUB_DATA_PROPERTY, DPSUBNAMED, OWLSubDataPropertyOfAxiom.class);
protected transient MapPointer dataSubPropertyAxiomsBySuperPosition = buildLazy(SUB_DATA_PROPERTY, DPSUPERNAMED, OWLSubDataPropertyOfAxiom.class);
protected transient MapPointer classAxiomsByClass = buildClassAxiomByClass();
protected transient MapPointer equivalentClassesAxiomsByClass = buildLazy(EQUIVALENT_CLASSES, CLASSCOLLECTIONS, OWLEquivalentClassesAxiom.class);
protected transient MapPointer disjointClassesAxiomsByClass = buildLazy(DISJOINT_CLASSES, CLASSCOLLECTIONS, OWLDisjointClassesAxiom.class);
protected transient MapPointer disjointUnionAxiomsByClass = buildLazy(DISJOINT_UNION, CLASSCOLLECTIONS, OWLDisjointUnionAxiom.class);
protected transient MapPointer hasKeyAxiomsByClass = buildLazy(HAS_KEY, CLASSSUPERNAMED, OWLHasKeyAxiom.class);
protected transient MapPointer equivalentObjectPropertyAxiomsByProperty = buildLazy(EQUIVALENT_OBJECT_PROPERTIES, OPCOLLECTIONS, OWLEquivalentObjectPropertiesAxiom.class);
protected transient MapPointer disjointObjectPropertyAxiomsByProperty = buildLazy(DISJOINT_OBJECT_PROPERTIES, OPCOLLECTIONS, OWLDisjointObjectPropertiesAxiom.class);
protected transient MapPointer objectPropertyDomainAxiomsByProperty = buildLazy(OBJECT_PROPERTY_DOMAIN, OPSUBNAMED, OWLObjectPropertyDomainAxiom.class);
protected transient MapPointer objectPropertyRangeAxiomsByProperty = buildLazy(OBJECT_PROPERTY_RANGE, OPSUBNAMED, OWLObjectPropertyRangeAxiom.class);
protected transient MapPointer functionalObjectPropertyAxiomsByProperty = buildLazy(FUNCTIONAL_OBJECT_PROPERTY, OPSUBNAMED, OWLFunctionalObjectPropertyAxiom.class);
protected transient MapPointerinverseFunctionalPropertyAxiomsByProperty = buildLazy(INVERSE_FUNCTIONAL_OBJECT_PROPERTY, OPSUBNAMED, OWLInverseFunctionalObjectPropertyAxiom.class);
protected transient MapPointer symmetricPropertyAxiomsByProperty = buildLazy(SYMMETRIC_OBJECT_PROPERTY, OPSUBNAMED, OWLSymmetricObjectPropertyAxiom.class);
protected transient MapPointer asymmetricPropertyAxiomsByProperty = buildLazy(ASYMMETRIC_OBJECT_PROPERTY, OPSUBNAMED, OWLAsymmetricObjectPropertyAxiom.class);
protected transient MapPointer reflexivePropertyAxiomsByProperty = buildLazy(REFLEXIVE_OBJECT_PROPERTY, OPSUBNAMED, OWLReflexiveObjectPropertyAxiom.class);
protected transient MapPointer irreflexivePropertyAxiomsByProperty = buildLazy(IRREFLEXIVE_OBJECT_PROPERTY, OPSUBNAMED, OWLIrreflexiveObjectPropertyAxiom.class);
protected transient MapPointer transitivePropertyAxiomsByProperty = buildLazy(TRANSITIVE_OBJECT_PROPERTY, OPSUBNAMED, OWLTransitiveObjectPropertyAxiom.class);
protected transient MapPointer inversePropertyAxiomsByProperty = buildLazy(INVERSE_OBJECT_PROPERTIES, OPCOLLECTIONS, OWLInverseObjectPropertiesAxiom.class);
protected transient MapPointer equivalentDataPropertyAxiomsByProperty = buildLazy(EQUIVALENT_DATA_PROPERTIES, DPCOLLECTIONS, OWLEquivalentDataPropertiesAxiom.class);
protected transient MapPointer disjointDataPropertyAxiomsByProperty = buildLazy(DISJOINT_DATA_PROPERTIES, DPCOLLECTIONS, OWLDisjointDataPropertiesAxiom.class);
protected transient MapPointer dataPropertyDomainAxiomsByProperty = buildLazy(DATA_PROPERTY_DOMAIN, DPSUBNAMED, OWLDataPropertyDomainAxiom.class);
protected transient MapPointer dataPropertyRangeAxiomsByProperty = buildLazy(DATA_PROPERTY_RANGE, DPSUBNAMED, OWLDataPropertyRangeAxiom.class);
protected transient MapPointer functionalDataPropertyAxiomsByProperty = buildLazy(FUNCTIONAL_DATA_PROPERTY, DPSUBNAMED, OWLFunctionalDataPropertyAxiom.class);
protected transient MapPointer classAssertionAxiomsByIndividual = buildLazy(CLASS_ASSERTION, INDIVIDUALSUBNAMED, OWLClassAssertionAxiom.class);
protected transient MapPointer objectPropertyAssertionsByIndividual = buildLazy(OBJECT_PROPERTY_ASSERTION, INDIVIDUALSUBNAMED, OWLObjectPropertyAssertionAxiom.class);
protected transient MapPointer dataPropertyAssertionsByIndividual = buildLazy(DATA_PROPERTY_ASSERTION, INDIVIDUALSUBNAMED, OWLDataPropertyAssertionAxiom.class);
protected transient MapPointer negativeObjectPropertyAssertionAxiomsByIndividual = buildLazy(NEGATIVE_OBJECT_PROPERTY_ASSERTION, INDIVIDUALSUBNAMED, OWLNegativeObjectPropertyAssertionAxiom.class);
protected transient MapPointer negativeDataPropertyAssertionAxiomsByIndividual = buildLazy(NEGATIVE_DATA_PROPERTY_ASSERTION, INDIVIDUALSUBNAMED, OWLNegativeDataPropertyAssertionAxiom.class);
protected transient MapPointer differentIndividualsAxiomsByIndividual = buildLazy(DIFFERENT_INDIVIDUALS, ICOLLECTIONS, OWLDifferentIndividualsAxiom.class);
protected transient MapPointer sameIndividualsAxiomsByIndividual = buildLazy(SAME_INDIVIDUAL, ICOLLECTIONS, OWLSameIndividualAxiom.class);
protected SetPointer importsDeclarations = new SetPointer<>();
protected SetPointer ontologyAnnotations = new SetPointer<>();
protected SetPointer generalClassAxioms = new SetPointer<>();
protected SetPointer propertyChainSubPropertyAxioms = new SetPointer<>();
@SuppressWarnings("rawtypes")
protected transient MapPointer axiomsByType = build(OWLAxiom.class);
protected transient MapPointer owlClassReferences = build(OWLAxiom.class);
protected transient MapPointer owlObjectPropertyReferences = build(OWLAxiom.class);
protected transient MapPointer owlDataPropertyReferences = build(OWLAxiom.class);
protected transient MapPointer owlIndividualReferences = build(OWLAxiom.class);
protected transient MapPointerowlAnonymousIndividualReferences = build(OWLAxiom.class);
protected transient MapPointer owlDatatypeReferences = build(OWLAxiom.class);
protected transient MapPointer owlAnnotationPropertyReferences = build(OWLAxiom.class);
protected transient MapPointer declarationsByEntity = build(OWLDeclarationAxiom.class);
//@formatter:on
@Nullable
private List axiomsForSerialization;
/**
* @param p pointer
* @param key type
* @param value type
* @param k key
* @param v value
* @return true if the pair (key, value) is contained
*/
public static boolean contains(MapPointer p, K k, V v) {
return p.contains(k, v);
}
@SuppressWarnings("null")
private void readObject(ObjectInputStream stream) throws IOException, ClassNotFoundException {
stream.defaultReadObject();
axiomsByType = build(OWLAxiom.class);
owlClassReferences = build(OWLAxiom.class);
owlObjectPropertyReferences = build(OWLAxiom.class);
owlDataPropertyReferences = build(OWLAxiom.class);
owlIndividualReferences = build(OWLAxiom.class);
owlAnonymousIndividualReferences = build(OWLAxiom.class);
owlDatatypeReferences = build(OWLAxiom.class);
owlAnnotationPropertyReferences = build(OWLAxiom.class);
declarationsByEntity = build(OWLDeclarationAxiom.class);
classAssertionAxiomsByClass =
buildLazy(CLASS_ASSERTION, CLASSEXPRESSIONS, OWLClassAssertionAxiom.class);
annotationAssertionAxiomsBySubject =
buildLazy(ANNOTATION_ASSERTION, ANNOTSUPERNAMED, OWLAnnotationAssertionAxiom.class);
subClassAxiomsBySubPosition =
buildLazy(SUBCLASS_OF, CLASSSUBNAMED, OWLSubClassOfAxiom.class);
subClassAxiomsBySuperPosition =
buildLazy(SUBCLASS_OF, CLASSSUPERNAMED, OWLSubClassOfAxiom.class);
objectSubPropertyAxiomsBySubPosition =
buildLazy(SUB_OBJECT_PROPERTY, OPSUBNAMED, OWLSubObjectPropertyOfAxiom.class);
objectSubPropertyAxiomsBySuperPosition =
buildLazy(SUB_OBJECT_PROPERTY, OPSUPERNAMED, OWLSubObjectPropertyOfAxiom.class);
dataSubPropertyAxiomsBySubPosition =
buildLazy(SUB_DATA_PROPERTY, DPSUBNAMED, OWLSubDataPropertyOfAxiom.class);
dataSubPropertyAxiomsBySuperPosition =
buildLazy(SUB_DATA_PROPERTY, DPSUPERNAMED, OWLSubDataPropertyOfAxiom.class);
classAxiomsByClass = buildClassAxiomByClass();
equivalentClassesAxiomsByClass =
buildLazy(EQUIVALENT_CLASSES, CLASSCOLLECTIONS, OWLEquivalentClassesAxiom.class);
disjointClassesAxiomsByClass =
buildLazy(DISJOINT_CLASSES, CLASSCOLLECTIONS, OWLDisjointClassesAxiom.class);
disjointUnionAxiomsByClass =
buildLazy(DISJOINT_UNION, CLASSCOLLECTIONS, OWLDisjointUnionAxiom.class);
hasKeyAxiomsByClass = buildLazy(HAS_KEY, CLASSSUPERNAMED, OWLHasKeyAxiom.class);
equivalentObjectPropertyAxiomsByProperty = buildLazy(EQUIVALENT_OBJECT_PROPERTIES,
OPCOLLECTIONS, OWLEquivalentObjectPropertiesAxiom.class);
disjointObjectPropertyAxiomsByProperty = buildLazy(DISJOINT_OBJECT_PROPERTIES,
OPCOLLECTIONS, OWLDisjointObjectPropertiesAxiom.class);
objectPropertyDomainAxiomsByProperty =
buildLazy(OBJECT_PROPERTY_DOMAIN, OPSUBNAMED, OWLObjectPropertyDomainAxiom.class);
objectPropertyRangeAxiomsByProperty =
buildLazy(OBJECT_PROPERTY_RANGE, OPSUBNAMED, OWLObjectPropertyRangeAxiom.class);
functionalObjectPropertyAxiomsByProperty = buildLazy(FUNCTIONAL_OBJECT_PROPERTY, OPSUBNAMED,
OWLFunctionalObjectPropertyAxiom.class);
inverseFunctionalPropertyAxiomsByProperty = buildLazy(INVERSE_FUNCTIONAL_OBJECT_PROPERTY,
OPSUBNAMED, OWLInverseFunctionalObjectPropertyAxiom.class);
symmetricPropertyAxiomsByProperty =
buildLazy(SYMMETRIC_OBJECT_PROPERTY, OPSUBNAMED, OWLSymmetricObjectPropertyAxiom.class);
asymmetricPropertyAxiomsByProperty = buildLazy(ASYMMETRIC_OBJECT_PROPERTY, OPSUBNAMED,
OWLAsymmetricObjectPropertyAxiom.class);
reflexivePropertyAxiomsByProperty =
buildLazy(REFLEXIVE_OBJECT_PROPERTY, OPSUBNAMED, OWLReflexiveObjectPropertyAxiom.class);
irreflexivePropertyAxiomsByProperty = buildLazy(IRREFLEXIVE_OBJECT_PROPERTY, OPSUBNAMED,
OWLIrreflexiveObjectPropertyAxiom.class);
transitivePropertyAxiomsByProperty = buildLazy(TRANSITIVE_OBJECT_PROPERTY, OPSUBNAMED,
OWLTransitiveObjectPropertyAxiom.class);
inversePropertyAxiomsByProperty = buildLazy(INVERSE_OBJECT_PROPERTIES, OPCOLLECTIONS,
OWLInverseObjectPropertiesAxiom.class);
equivalentDataPropertyAxiomsByProperty = buildLazy(EQUIVALENT_DATA_PROPERTIES,
DPCOLLECTIONS, OWLEquivalentDataPropertiesAxiom.class);
disjointDataPropertyAxiomsByProperty = buildLazy(DISJOINT_DATA_PROPERTIES, DPCOLLECTIONS,
OWLDisjointDataPropertiesAxiom.class);
dataPropertyDomainAxiomsByProperty =
buildLazy(DATA_PROPERTY_DOMAIN, DPSUBNAMED, OWLDataPropertyDomainAxiom.class);
dataPropertyRangeAxiomsByProperty =
buildLazy(DATA_PROPERTY_RANGE, DPSUBNAMED, OWLDataPropertyRangeAxiom.class);
functionalDataPropertyAxiomsByProperty =
buildLazy(FUNCTIONAL_DATA_PROPERTY, DPSUBNAMED, OWLFunctionalDataPropertyAxiom.class);
classAssertionAxiomsByIndividual =
buildLazy(CLASS_ASSERTION, INDIVIDUALSUBNAMED, OWLClassAssertionAxiom.class);
objectPropertyAssertionsByIndividual = buildLazy(OBJECT_PROPERTY_ASSERTION,
INDIVIDUALSUBNAMED, OWLObjectPropertyAssertionAxiom.class);
dataPropertyAssertionsByIndividual = buildLazy(DATA_PROPERTY_ASSERTION, INDIVIDUALSUBNAMED,
OWLDataPropertyAssertionAxiom.class);
negativeObjectPropertyAssertionAxiomsByIndividual =
buildLazy(NEGATIVE_OBJECT_PROPERTY_ASSERTION, INDIVIDUALSUBNAMED,
OWLNegativeObjectPropertyAssertionAxiom.class);
negativeDataPropertyAssertionAxiomsByIndividual =
buildLazy(NEGATIVE_DATA_PROPERTY_ASSERTION, INDIVIDUALSUBNAMED,
OWLNegativeDataPropertyAssertionAxiom.class);
differentIndividualsAxiomsByIndividual =
buildLazy(DIFFERENT_INDIVIDUALS, ICOLLECTIONS, OWLDifferentIndividualsAxiom.class);
sameIndividualsAxiomsByIndividual =
buildLazy(SAME_INDIVIDUAL, ICOLLECTIONS, OWLSameIndividualAxiom.class);
axiomsForSerialization.forEach(this::addAxiom);
axiomsForSerialization = null;
}
/**
* @param type entity type
* @return true if there are entities of the specified type referred
*/
public boolean anyEntities(EntityType type) {
if (EntityType.CLASS.equals(type)) {
return !owlClassReferences.isEmpty();
}
if (EntityType.DATA_PROPERTY.equals(type)) {
return !owlDataPropertyReferences.isEmpty();
}
if (EntityType.OBJECT_PROPERTY.equals(type)) {
return !owlObjectPropertyReferences.isEmpty();
}
if (EntityType.ANNOTATION_PROPERTY.equals(type)) {
return !owlAnnotationPropertyReferences.isEmpty();
}
if (EntityType.DATATYPE.equals(type)) {
return !owlDatatypeReferences.isEmpty();
}
if (EntityType.NAMED_INDIVIDUAL.equals(type)) {
return !owlIndividualReferences.isEmpty();
}
return false;
}
private void writeObject(ObjectOutputStream stream) throws IOException {
axiomsForSerialization = asList(axiomsByType.getAllValues());
stream.defaultWriteObject();
}
/**
* @param i iri
* @return true if a class with this iri exists
*/
public boolean containsClassInSignature(IRI i) {
return owlClassReferences.containsReference(i);
}
/**
* @param i iri
* @return true if an object property with this iri exists
*/
public boolean containsObjectPropertyInSignature(IRI i) {
return owlObjectPropertyReferences.containsReference(i);
}
/**
* @param i iri
* @return true if a data property with this iri exists
*/
public boolean containsDataPropertyInSignature(IRI i) {
return owlDataPropertyReferences.containsReference(i);
}
/**
* @param i iri
* @return true if an annotation property with this iri exists
*/
public boolean containsAnnotationPropertyInSignature(IRI i) {
return owlAnnotationPropertyReferences.containsReference(i);
}
/**
* @param i iri
* @return true if a individual with this iri exists
*/
public boolean containsIndividualInSignature(IRI i) {
return owlIndividualReferences.containsReference(i);
}
/**
* @param i iri
* @return true if a datatype with this iri exists
*/
public boolean containsDatatypeInSignature(IRI i) {
return owlDatatypeReferences.containsReference(i);
}
/**
* @param i iri
* @return true if a class with this iri exists
*/
public boolean containsClassInSignature(OWLClass i) {
return owlClassReferences.containsReference(i);
}
/**
* @param i iri
* @return true if an object property with this iri exists
*/
public boolean containsObjectPropertyInSignature(OWLObjectProperty i) {
return owlObjectPropertyReferences.containsReference(i);
}
/**
* @param i iri
* @return true if a data property with this iri exists
*/
public boolean containsDataPropertyInSignature(OWLDataProperty i) {
return owlDataPropertyReferences.containsReference(i);
}
/**
* @param i iri
* @return true if an annotation property with this iri exists
*/
public boolean containsAnnotationPropertyInSignature(OWLAnnotationProperty i) {
return owlAnnotationPropertyReferences.containsReference(i);
}
/**
* @param i iri
* @return true if a individual with this iri exists
*/
public boolean containsIndividualInSignature(OWLNamedIndividual i) {
return owlIndividualReferences.containsReference(i);
}
/**
* @param i iri
* @return true if a datatype with this iri exists
*/
public boolean containsDatatypeInSignature(OWLDatatype i) {
return owlDatatypeReferences.containsReference(i);
}
/**
* @param type type of map key
* @param axiom class of axiom indexed
* @param key type
* @param value type
* @return map pointer matching the search, or null if there is not one
*/
// not always not null, but supposed to
Optional> get(Class type,
Class axiom) {
return get(type, axiom, Navigation.IN_SUB_POSITION);
}
/**
* @param type type of map key
* @param axiom class of axiom indexed
* @param position for axioms with a left/right distinction, IN_SUPER_POSITION means right index
* @param key type
* @param value type
* @return map pointer matching the search, or null if there is not one
*/
// not always not null, but supposed to be
@SuppressWarnings({"unchecked"})
Optional> get(Class type,
Class axiom, Navigation position) {
if (OWLEntity.class.isAssignableFrom(type) && axiom.equals(OWLDeclarationAxiom.class)) {
return optional((MapPointer) declarationsByEntity);
}
if (type.equals(OWLClass.class) && axiom.equals(OWLAxiom.class)) {
return optional((MapPointer) owlClassReferences);
}
if (type.equals(OWLObjectProperty.class) && axiom.equals(OWLAxiom.class)) {
return optional((MapPointer) owlObjectPropertyReferences);
}
if (type.equals(OWLDataProperty.class) && axiom.equals(OWLAxiom.class)) {
return optional((MapPointer) owlDataPropertyReferences);
}
if (type.equals(OWLNamedIndividual.class) && axiom.equals(OWLAxiom.class)) {
return optional((MapPointer) owlIndividualReferences);
}
if (type.equals(OWLAnonymousIndividual.class) && axiom.equals(OWLAxiom.class)) {
return optional((MapPointer) owlAnonymousIndividualReferences);
}
if (type.equals(OWLDatatype.class) && axiom.equals(OWLAxiom.class)) {
return optional((MapPointer) owlDatatypeReferences);
}
if (type.equals(OWLAnnotationProperty.class) && axiom.equals(OWLAxiom.class)) {
return optional((MapPointer) owlAnnotationPropertyReferences);
}
if (type.equals(OWLClassExpression.class)) {
return optional((MapPointer) classAssertionAxiomsByClass);
}
if (type.equals(OWLObjectPropertyExpression.class)) {
if (axiom.equals(OWLSubObjectPropertyOfAxiom.class)) {
if (position == Navigation.IN_SUPER_POSITION) {
return optional((MapPointer) objectSubPropertyAxiomsBySuperPosition);
} else {
return optional((MapPointer) objectSubPropertyAxiomsBySubPosition);
}
}
if (axiom.equals(OWLEquivalentObjectPropertiesAxiom.class)) {
return optional((MapPointer) equivalentObjectPropertyAxiomsByProperty);
}
if (axiom.equals(OWLDisjointObjectPropertiesAxiom.class)) {
return optional((MapPointer) disjointObjectPropertyAxiomsByProperty);
}
if (axiom.equals(OWLObjectPropertyDomainAxiom.class)) {
return optional((MapPointer) objectPropertyDomainAxiomsByProperty);
}
if (axiom.equals(OWLObjectPropertyRangeAxiom.class)) {
return optional((MapPointer) objectPropertyRangeAxiomsByProperty);
}
if (axiom.equals(OWLFunctionalObjectPropertyAxiom.class)) {
return optional((MapPointer) functionalObjectPropertyAxiomsByProperty);
}
if (axiom.equals(OWLInverseFunctionalObjectPropertyAxiom.class)) {
return optional((MapPointer) inverseFunctionalPropertyAxiomsByProperty);
}
if (axiom.equals(OWLSymmetricObjectPropertyAxiom.class)) {
return optional((MapPointer) symmetricPropertyAxiomsByProperty);
}
if (axiom.equals(OWLAsymmetricObjectPropertyAxiom.class)) {
return optional((MapPointer) asymmetricPropertyAxiomsByProperty);
}
if (axiom.equals(OWLReflexiveObjectPropertyAxiom.class)) {
return optional((MapPointer) reflexivePropertyAxiomsByProperty);
}
if (axiom.equals(OWLIrreflexiveObjectPropertyAxiom.class)) {
return optional((MapPointer) irreflexivePropertyAxiomsByProperty);
}
if (axiom.equals(OWLTransitiveObjectPropertyAxiom.class)) {
return optional((MapPointer) transitivePropertyAxiomsByProperty);
}
if (axiom.equals(OWLInverseObjectPropertiesAxiom.class)) {
return optional((MapPointer) inversePropertyAxiomsByProperty);
}
}
if (type.equals(OWLDataPropertyExpression.class)) {
if (axiom.equals(OWLSubDataPropertyOfAxiom.class)) {
if (position == Navigation.IN_SUPER_POSITION) {
return optional((MapPointer) dataSubPropertyAxiomsBySuperPosition);
} else {
return optional((MapPointer) dataSubPropertyAxiomsBySubPosition);
}
}
if (axiom.equals(OWLEquivalentDataPropertiesAxiom.class)) {
return optional((MapPointer) equivalentDataPropertyAxiomsByProperty);
}
if (axiom.equals(OWLDisjointDataPropertiesAxiom.class)) {
return optional((MapPointer) disjointDataPropertyAxiomsByProperty);
}
if (axiom.equals(OWLDataPropertyDomainAxiom.class)) {
return optional((MapPointer) dataPropertyDomainAxiomsByProperty);
}
if (axiom.equals(OWLDataPropertyRangeAxiom.class)) {
return optional((MapPointer) dataPropertyRangeAxiomsByProperty);
}
if (axiom.equals(OWLFunctionalDataPropertyAxiom.class)) {
return optional((MapPointer) functionalDataPropertyAxiomsByProperty);
}
}
if (type.equals(OWLAnnotationSubject.class) || type.equals(IRI.class)) {
return optional((MapPointer) annotationAssertionAxiomsBySubject);
}
if (type.equals(OWLIndividual.class)) {
if (axiom.equals(OWLClassAssertionAxiom.class)) {
return optional((MapPointer) classAssertionAxiomsByIndividual);
}
if (axiom.equals(OWLObjectPropertyAssertionAxiom.class)) {
return optional((MapPointer) objectPropertyAssertionsByIndividual);
}
if (axiom.equals(OWLDataPropertyAssertionAxiom.class)) {
return optional((MapPointer) dataPropertyAssertionsByIndividual);
}
if (axiom.equals(OWLNegativeObjectPropertyAssertionAxiom.class)) {
return optional(
(MapPointer) negativeObjectPropertyAssertionAxiomsByIndividual);
}
if (axiom.equals(OWLNegativeDataPropertyAssertionAxiom.class)) {
return optional((MapPointer) negativeDataPropertyAssertionAxiomsByIndividual);
}
if (axiom.equals(OWLDifferentIndividualsAxiom.class)) {
return optional((MapPointer) differentIndividualsAxiomsByIndividual);
}
if (axiom.equals(OWLSameIndividualAxiom.class)) {
return optional((MapPointer) sameIndividualsAxiomsByIndividual);
}
}
if (type.equals(OWLClass.class)) {
if (axiom.equals(OWLSubClassOfAxiom.class)) {
if (position == Navigation.IN_SUPER_POSITION) {
return optional((MapPointer) subClassAxiomsBySuperPosition);
} else {
return optional((MapPointer) subClassAxiomsBySubPosition);
}
}
if (axiom.equals(OWLClassAxiom.class)) {
return optional((MapPointer) classAxiomsByClass);
}
if (axiom.equals(OWLEquivalentClassesAxiom.class)) {
return optional((MapPointer) equivalentClassesAxiomsByClass);
}
if (axiom.equals(OWLDisjointClassesAxiom.class)) {
return optional((MapPointer) disjointClassesAxiomsByClass);
}
if (axiom.equals(OWLDisjointUnionAxiom.class)) {
return optional((MapPointer) disjointUnionAxiomsByClass);
}
if (axiom.equals(OWLHasKeyAxiom.class)) {
return optional((MapPointer) hasKeyAxiomsByClass);
}
}
return emptyOptional();
}
protected MapPointer build(Class valueWithness) {
return build(null, null, valueWithness);
}
protected MapPointer buildLazy(AxiomType t,
OWLAxiomVisitorEx v, Class valueWithness) {
return new MapPointer<>(t, v, false, this, valueWithness);
}
protected ClassAxiomByClassPointer buildClassAxiomByClass() {
return new ClassAxiomByClassPointer(null, null, false, this);
}
protected MapPointer build(@Nullable AxiomType t,
@Nullable OWLAxiomVisitorEx v, Class valueWithness) {
return new MapPointer<>(t, v, true, this, valueWithness);
}
/**
* @param axiom axiom to add
* @return true if the axiom was not already included
*/
public boolean addAxiom(final OWLAxiom axiom) {
checkNotNull(axiom, "axiom cannot be null");
if (axiomsByType.put(axiom.getAxiomType(), axiom)) {
axiom.accept(addChangeVisitor);
AbstractCollector referenceAdder = new AbstractCollector() {
@Override
public void visit(OWLClass ce) {
owlClassReferences.put(ce, axiom);
}
@Override
public void visit(OWLObjectProperty property) {
owlObjectPropertyReferences.put(property, axiom);
}
@Override
public void visit(OWLDataProperty property) {
owlDataPropertyReferences.put(property, axiom);
}
@Override
public void visit(OWLNamedIndividual individual) {
owlIndividualReferences.put(individual, axiom);
}
@Override
public void visit(OWLAnnotationProperty property) {
owlAnnotationPropertyReferences.put(property, axiom);
}
@Override
public void visit(OWLDatatype node) {
owlDatatypeReferences.put(node, axiom);
}
@Override
public void visit(OWLAnonymousIndividual individual) {
owlAnonymousIndividualReferences.put(individual, axiom);
}
};
axiom.accept(referenceAdder);
return true;
}
return false;
}
/**
* @param axiom axiom to remove
* @return true if removed
*/
public boolean removeAxiom(final OWLAxiom axiom) {
checkNotNull(axiom, "axiom cannot be null");
if (axiomsByType.remove(axiom.getAxiomType(), axiom)) {
axiom.accept(removeChangeVisitor);
AbstractCollector referenceRemover = new AbstractCollector() {
@Override
public void visit(OWLClass ce) {
owlClassReferences.remove(ce, axiom);
}
@Override
public void visit(OWLObjectProperty property) {
owlObjectPropertyReferences.remove(property, axiom);
}
@Override
public void visit(OWLDataProperty property) {
owlDataPropertyReferences.remove(property, axiom);
}
@Override
public void visit(OWLNamedIndividual individual) {
owlIndividualReferences.remove(individual, axiom);
}
@Override
public void visit(OWLAnnotationProperty property) {
owlAnnotationPropertyReferences.remove(property, axiom);
}
@Override
public void visit(OWLDatatype node) {
owlDatatypeReferences.remove(node, axiom);
}
@Override
public void visit(OWLAnonymousIndividual individual) {
owlAnonymousIndividualReferences.remove(individual, axiom);
}
};
axiom.accept(referenceRemover);
return true;
}
return false;
}
/**
* @param e entity to check
* @return true if the entity is declared in the ontology
*/
public boolean isDeclared(OWLEntity e) {
return declarationsByEntity.containsKey(e);
}
/**
* @return true if empty
*/
public boolean isEmpty() {
return axiomsByType.isEmpty() && ontologyAnnotations.isEmpty();
}
/**
* @param filter filter to satisfy
* @param key type
* @param key key
* @return set of values
*/
public Collection filterAxioms(OWLAxiomSearchFilter filter, K key) {
if (filter == Filters.annotations) {
Optional> mapPointerOptional =
get(OWLAnnotationSubject.class, OWLAnnotationAssertionAxiom.class);
if (mapPointerOptional.isPresent()) {
return mapPointerOptional.get().getValuesAsCollection((OWLAnnotationSubject) key);
}
}
return axiomsByType.filterAxioms(filter, key);
}
/**
* @param key type
* @param filter filter to satisfy
* @param key key to match
* @return true if the filter is matched at least once
*/
public boolean contains(OWLAxiomSearchFilter filter, K key) {
for (AxiomType at : filter.getAxiomTypes()) {
if (axiomsByType.matchOnValues(at, t -> filter.pass(t, key))) {
return true;
}
}
return false;
}
/**
* @return stream of imports declaration
*/
public Stream getImportsDeclarations() {
return importsDeclarations.stream();
}
/**
* @param importDeclaration import declaration to remove
* @return true if added
*/
public boolean addImportsDeclaration(OWLImportsDeclaration importDeclaration) {
return importsDeclarations.add(importDeclaration);
}
/**
* @param importDeclaration import declaration to remove
* @return true if removed
*/
public boolean removeImportsDeclaration(OWLImportsDeclaration importDeclaration) {
return importsDeclarations.remove(importDeclaration);
}
/**
* @return iterable of annotations
*/
Stream getOntologyAnnotations() {
return ontologyAnnotations.stream();
}
/**
* @param ann annotation to add
* @return true if annotation added
*/
public boolean addOntologyAnnotation(OWLAnnotation ann) {
return ontologyAnnotations.add(ann);
}
/**
* @param ann annotation to remove
* @return true if annotation removed
*/
public boolean removeOntologyAnnotation(OWLAnnotation ann) {
return ontologyAnnotations.remove(ann);
}
/**
* @return count of all axioms
*/
public int getAxiomCount() {
return axiomsByType.size();
}
/**
* Gets the axioms by type.
*
* @return the axioms by type
*/
public Stream getAxioms() {
return axiomsByType.getAllValues();
}
/**
* @param axiom type
* @param axiomType axiom type to count
* @return axiom count
*/
public int getAxiomCount(AxiomType axiomType) {
if (!axiomsByType.isInitialized()) {
return 0;
}
return axiomsByType.countValues(axiomType);
}
/**
* @return logical axioms
*/
public Stream getLogicalAxioms() {
return LOGICAL_AXIOM_TYPES.stream()
.map(type -> axiomsByType.values(type, OWLLogicalAxiom.class)).flatMap(x -> x);
}
/**
* @return logical axioms count
*/
public int getLogicalAxiomCount() {
int count = 0;
for (AxiomType type : LOGICAL_AXIOM_TYPES) {
count += axiomsByType.countValues(type);
}
return count;
}
/**
* @return copy of GCI axioms
*/
public Stream getGeneralClassAxioms() {
// XXX watch out for performance issues
return generalClassAxioms.stream().sorted();
}
/**
* @param ax GCI axiom to add
* @return true if axiom added
*/
public boolean addGeneralClassAxioms(OWLClassAxiom ax) {
return generalClassAxioms.add(ax);
}
/**
* @param ax axiom to remove
* @return true if removed
*/
public boolean removeGeneralClassAxioms(OWLClassAxiom ax) {
return generalClassAxioms.remove(ax);
}
/**
* @param ax axiom to add
* @return true if added
*/
public boolean addPropertyChainSubPropertyAxioms(OWLSubPropertyChainOfAxiom ax) {
return propertyChainSubPropertyAxioms.add(ax);
}
/**
* @param ax axiom to remove
* @return true if removed
*/
public boolean removePropertyChainSubPropertyAxioms(OWLSubPropertyChainOfAxiom ax) {
return propertyChainSubPropertyAxioms.remove(ax);
}
/**
* @return map of axioms by type
*/
@SuppressWarnings("rawtypes")
public MapPointer getAxiomsByType() {
return axiomsByType;
}
@Override
public String toString() {
StringBuilder b = new StringBuilder("Internals{(first 20 axioms) ");
axiomsByType.getAllValues().limit(20).forEach(a -> b.append(a).append('\n'));
b.append('}');
return b.toString();
}
/**
* @param entity entity to check
* @return true if reference is contained
*/
public boolean containsReference(OWLEntity entity) {
return entity.accept(refChecker).booleanValue();
}
/**
* @param owlEntity entity to describe
* @return referencing axioms
*/
public Stream getReferencingAxioms(OWLEntity owlEntity) {
return owlEntity.accept(refAxiomsCollector);
}
//@formatter:on
private class ReferenceChecker implements OWLEntityVisitorEx, Serializable {
ReferenceChecker() {}
@Override
public Boolean visit(OWLClass cls) {
return Boolean.valueOf(owlClassReferences.containsKey(cls));
}
@Override
public Boolean visit(OWLObjectProperty property) {
return Boolean.valueOf(owlObjectPropertyReferences.containsKey(property));
}
@Override
public Boolean visit(OWLDataProperty property) {
return Boolean.valueOf(owlDataPropertyReferences.containsKey(property));
}
@Override
public Boolean visit(OWLNamedIndividual individual) {
return Boolean.valueOf(owlIndividualReferences.containsKey(individual));
}
@Override
public Boolean visit(OWLDatatype datatype) {
return Boolean.valueOf(owlDatatypeReferences.containsKey(datatype));
}
@Override
public Boolean visit(OWLAnnotationProperty property) {
return Boolean.valueOf(owlAnnotationPropertyReferences.containsKey(property));
}
}
protected class SetPointer implements Serializable {
private final Set set = createSyncSet();
public boolean isEmpty() {
return set.isEmpty();
}
public boolean add(K k) {
return set.add(k);
}
public boolean remove(K k) {
return set.remove(k);
}
public Stream stream() {
if (set.isEmpty()) {
return Stream.empty();
}
List toReturn = new ArrayList<>(set);
try {
toReturn.sort(null);
} catch (IllegalArgumentException e) {
// print a warning and leave the list unsorted
LOGGER.warn("Misbehaving triple comparator, leaving triples unsorted", e);
}
return toReturn.stream();
}
}
class AddAxiomVisitor implements OWLAxiomVisitor, Serializable {
@Override
public void visit(OWLSubClassOfAxiom axiom) {
if (!axiom.getSubClass().isAnonymous()) {
OWLClass subClass = (OWLClass) axiom.getSubClass();
subClassAxiomsBySubPosition.put(subClass, axiom);
classAxiomsByClass.put(subClass, axiom);
} else {
addGeneralClassAxioms(axiom);
}
if (!axiom.getSuperClass().isAnonymous()) {
subClassAxiomsBySuperPosition.put((OWLClass) axiom.getSuperClass(), axiom);
}
}
@Override
public void visit(OWLNegativeObjectPropertyAssertionAxiom axiom) {
negativeObjectPropertyAssertionAxiomsByIndividual.put(axiom.getSubject(), axiom);
}
@Override
public void visit(OWLAsymmetricObjectPropertyAxiom axiom) {
asymmetricPropertyAxiomsByProperty.put(axiom.getProperty(), axiom);
}
@Override
public void visit(OWLReflexiveObjectPropertyAxiom axiom) {
reflexivePropertyAxiomsByProperty.put(axiom.getProperty(), axiom);
}
@Override
public void visit(OWLDisjointClassesAxiom axiom) {
AtomicBoolean allAnon = new AtomicBoolean(true);
// Index against each named class in the axiom
axiom.classExpressions().filter(d -> !d.isAnonymous()).forEach(desc -> {
OWLClass cls = (OWLClass) desc;
disjointClassesAxiomsByClass.put(cls, axiom);
classAxiomsByClass.put(cls, axiom);
allAnon.set(false);
});
if (allAnon.get()) {
addGeneralClassAxioms(axiom);
}
}
@Override
public void visit(OWLDataPropertyDomainAxiom axiom) {
dataPropertyDomainAxiomsByProperty.put(axiom.getProperty(), axiom);
}
@Override
public void visit(OWLObjectPropertyDomainAxiom axiom) {
if (axiom.getProperty().isOWLObjectProperty()) {
objectPropertyDomainAxiomsByProperty.put(axiom.getProperty(), axiom);
}
}
@Override
public void visit(OWLEquivalentObjectPropertiesAxiom axiom) {
axiom.properties().forEach(p -> equivalentObjectPropertyAxiomsByProperty.put(p, axiom));
}
@Override
public void visit(OWLInverseObjectPropertiesAxiom axiom) {
inversePropertyAxiomsByProperty.put(axiom.getFirstProperty(), axiom);
inversePropertyAxiomsByProperty.put(axiom.getSecondProperty(), axiom);
}
@Override
public void visit(OWLNegativeDataPropertyAssertionAxiom axiom) {
negativeDataPropertyAssertionAxiomsByIndividual.put(axiom.getSubject(), axiom);
}
@Override
public void visit(OWLDifferentIndividualsAxiom axiom) {
axiom.individuals()
.forEach(ind -> differentIndividualsAxiomsByIndividual.put(ind, axiom));
}
@Override
public void visit(OWLDisjointDataPropertiesAxiom axiom) {
axiom.properties().forEach(p -> disjointDataPropertyAxiomsByProperty.put(p, axiom));
}
@Override
public void visit(OWLDisjointObjectPropertiesAxiom axiom) {
axiom.properties().forEach(p -> disjointObjectPropertyAxiomsByProperty.put(p, axiom));
}
@Override
public void visit(OWLObjectPropertyRangeAxiom axiom) {
objectPropertyRangeAxiomsByProperty.put(axiom.getProperty(), axiom);
}
@Override
public void visit(OWLObjectPropertyAssertionAxiom axiom) {
objectPropertyAssertionsByIndividual.put(axiom.getSubject(), axiom);
}
@Override
public void visit(OWLFunctionalObjectPropertyAxiom axiom) {
functionalObjectPropertyAxiomsByProperty.put(axiom.getProperty(), axiom);
}
@Override
public void visit(OWLSubObjectPropertyOfAxiom axiom) {
objectSubPropertyAxiomsBySubPosition.put(axiom.getSubProperty(), axiom);
objectSubPropertyAxiomsBySuperPosition.put(axiom.getSuperProperty(), axiom);
}
@Override
public void visit(OWLDisjointUnionAxiom axiom) {
disjointUnionAxiomsByClass.put(axiom.getOWLClass(), axiom);
classAxiomsByClass.put(axiom.getOWLClass(), axiom);
}
@Override
public void visit(OWLDeclarationAxiom axiom) {
declarationsByEntity.put(axiom.getEntity(), axiom);
}
@Override
public void visit(OWLAnnotationAssertionAxiom axiom) {
annotationAssertionAxiomsBySubject.put(axiom.getSubject(), axiom);
}
@Override
public void visit(OWLHasKeyAxiom axiom) {
if (!axiom.getClassExpression().isAnonymous()) {
hasKeyAxiomsByClass.put(axiom.getClassExpression().asOWLClass(), axiom);
}
}
@Override
public void visit(OWLSymmetricObjectPropertyAxiom axiom) {
symmetricPropertyAxiomsByProperty.put(axiom.getProperty(), axiom);
}
@Override
public void visit(OWLDataPropertyRangeAxiom axiom) {
dataPropertyRangeAxiomsByProperty.put(axiom.getProperty(), axiom);
}
@Override
public void visit(OWLFunctionalDataPropertyAxiom axiom) {
functionalDataPropertyAxiomsByProperty.put(axiom.getProperty(), axiom);
}
@Override
public void visit(OWLEquivalentDataPropertiesAxiom axiom) {
axiom.properties().forEach(p -> equivalentDataPropertyAxiomsByProperty.put(p, axiom));
}
@Override
public void visit(OWLClassAssertionAxiom axiom) {
classAssertionAxiomsByIndividual.put(axiom.getIndividual(), axiom);
if (!axiom.getClassExpression().isAnonymous()) {
classAssertionAxiomsByClass.put(axiom.getClassExpression(), axiom);
}
}
@Override
public void visit(OWLEquivalentClassesAxiom axiom) {
AtomicBoolean allAnon = new AtomicBoolean(true);
axiom.classExpressions().filter(d -> !d.isAnonymous()).forEach(desc -> {
equivalentClassesAxiomsByClass.put((OWLClass) desc, axiom);
classAxiomsByClass.put((OWLClass) desc, axiom);
allAnon.set(false);
});
if (allAnon.get()) {
addGeneralClassAxioms(axiom);
}
}
@Override
public void visit(OWLDataPropertyAssertionAxiom axiom) {
dataPropertyAssertionsByIndividual.put(axiom.getSubject(), axiom);
}
@Override
public void visit(OWLTransitiveObjectPropertyAxiom axiom) {
transitivePropertyAxiomsByProperty.put(axiom.getProperty(), axiom);
}
@Override
public void visit(OWLIrreflexiveObjectPropertyAxiom axiom) {
irreflexivePropertyAxiomsByProperty.put(axiom.getProperty(), axiom);
}
@Override
public void visit(OWLSubDataPropertyOfAxiom axiom) {
dataSubPropertyAxiomsBySubPosition.put(axiom.getSubProperty(), axiom);
dataSubPropertyAxiomsBySuperPosition.put(axiom.getSuperProperty(), axiom);
}
@Override
public void visit(OWLInverseFunctionalObjectPropertyAxiom axiom) {
inverseFunctionalPropertyAxiomsByProperty.put(axiom.getProperty(), axiom);
}
@Override
public void visit(OWLSameIndividualAxiom axiom) {
axiom.individuals().forEach(i -> sameIndividualsAxiomsByIndividual.put(i, axiom));
}
@Override
public void visit(OWLSubPropertyChainOfAxiom axiom) {
addPropertyChainSubPropertyAxioms(axiom);
}
}
class RemoveAxiomVisitor implements OWLAxiomVisitor, Serializable {
@Override
public void visit(OWLSubClassOfAxiom axiom) {
if (!axiom.getSubClass().isAnonymous()) {
OWLClass subClass = (OWLClass) axiom.getSubClass();
subClassAxiomsBySubPosition.remove(subClass, axiom);
classAxiomsByClass.remove(subClass, axiom);
} else {
removeGeneralClassAxioms(axiom);
}
if (!axiom.getSuperClass().isAnonymous()) {
subClassAxiomsBySuperPosition.remove(axiom.getSuperClass().asOWLClass(), axiom);
}
}
@Override
public void visit(OWLNegativeObjectPropertyAssertionAxiom axiom) {
negativeObjectPropertyAssertionAxiomsByIndividual.remove(axiom.getSubject(), axiom);
}
@Override
public void visit(OWLAsymmetricObjectPropertyAxiom axiom) {
asymmetricPropertyAxiomsByProperty.remove(axiom.getProperty(), axiom);
}
@Override
public void visit(OWLReflexiveObjectPropertyAxiom axiom) {
reflexivePropertyAxiomsByProperty.remove(axiom.getProperty(), axiom);
}
@Override
public void visit(OWLDisjointClassesAxiom axiom) {
AtomicBoolean allAnon = new AtomicBoolean(true);
axiom.classExpressions().filter(c -> !c.isAnonymous())
.map(OWLClassExpression::asOWLClass).forEach(c -> {
disjointClassesAxiomsByClass.remove(c, axiom);
classAxiomsByClass.remove(c, axiom);
allAnon.set(false);
});
if (allAnon.get()) {
removeGeneralClassAxioms(axiom);
}
}
@Override
public void visit(OWLDataPropertyDomainAxiom axiom) {
dataPropertyDomainAxiomsByProperty.remove(axiom.getProperty(), axiom);
}
@Override
public void visit(OWLObjectPropertyDomainAxiom axiom) {
if (axiom.getProperty().isOWLObjectProperty()) {
objectPropertyDomainAxiomsByProperty.remove(axiom.getProperty(), axiom);
}
}
@Override
public void visit(OWLEquivalentObjectPropertiesAxiom axiom) {
axiom.properties()
.forEach(p -> equivalentObjectPropertyAxiomsByProperty.remove(p, axiom));
}
@Override
public void visit(OWLInverseObjectPropertiesAxiom axiom) {
inversePropertyAxiomsByProperty.remove(axiom.getFirstProperty(), axiom);
inversePropertyAxiomsByProperty.remove(axiom.getSecondProperty(), axiom);
}
@Override
public void visit(OWLNegativeDataPropertyAssertionAxiom axiom) {
negativeDataPropertyAssertionAxiomsByIndividual.remove(axiom.getSubject(), axiom);
}
@Override
public void visit(OWLDifferentIndividualsAxiom axiom) {
axiom.individuals()
.forEach(i -> differentIndividualsAxiomsByIndividual.remove(i, axiom));
}
@Override
public void visit(OWLDisjointDataPropertiesAxiom axiom) {
axiom.properties().forEach(p -> disjointDataPropertyAxiomsByProperty.remove(p, axiom));
}
@Override
public void visit(OWLDisjointObjectPropertiesAxiom axiom) {
axiom.properties()
.forEach(p -> disjointObjectPropertyAxiomsByProperty.remove(p, axiom));
}
@Override
public void visit(OWLObjectPropertyRangeAxiom axiom) {
objectPropertyRangeAxiomsByProperty.remove(axiom.getProperty(), axiom);
}
@Override
public void visit(OWLObjectPropertyAssertionAxiom axiom) {
objectPropertyAssertionsByIndividual.remove(axiom.getSubject(), axiom);
}
@Override
public void visit(OWLFunctionalObjectPropertyAxiom axiom) {
functionalObjectPropertyAxiomsByProperty.remove(axiom.getProperty(), axiom);
}
@Override
public void visit(OWLSubObjectPropertyOfAxiom axiom) {
objectSubPropertyAxiomsBySubPosition.remove(axiom.getSubProperty(), axiom);
objectSubPropertyAxiomsBySuperPosition.remove(axiom.getSuperProperty(), axiom);
}
@Override
public void visit(OWLDisjointUnionAxiom axiom) {
disjointUnionAxiomsByClass.remove(axiom.getOWLClass(), axiom);
classAxiomsByClass.remove(axiom.getOWLClass(), axiom);
}
@Override
public void visit(OWLDeclarationAxiom axiom) {
declarationsByEntity.remove(axiom.getEntity(), axiom);
}
@Override
public void visit(OWLAnnotationAssertionAxiom axiom) {
annotationAssertionAxiomsBySubject.remove(axiom.getSubject(), axiom);
}
@Override
public void visit(OWLHasKeyAxiom axiom) {
if (!axiom.getClassExpression().isAnonymous()) {
hasKeyAxiomsByClass.remove(axiom.getClassExpression().asOWLClass(), axiom);
}
}
@Override
public void visit(OWLSymmetricObjectPropertyAxiom axiom) {
symmetricPropertyAxiomsByProperty.remove(axiom.getProperty(), axiom);
}
@Override
public void visit(OWLDataPropertyRangeAxiom axiom) {
dataPropertyRangeAxiomsByProperty.remove(axiom.getProperty(), axiom);
}
@Override
public void visit(OWLFunctionalDataPropertyAxiom axiom) {
functionalDataPropertyAxiomsByProperty.remove(axiom.getProperty(), axiom);
}
@Override
public void visit(OWLEquivalentDataPropertiesAxiom axiom) {
axiom.properties()
.forEach(p -> equivalentDataPropertyAxiomsByProperty.remove(p, axiom));
}
@Override
public void visit(OWLClassAssertionAxiom axiom) {
classAssertionAxiomsByIndividual.remove(axiom.getIndividual(), axiom);
if (!axiom.getClassExpression().isAnonymous()) {
classAssertionAxiomsByClass.remove(axiom.getClassExpression(), axiom);
}
}
@Override
public void visit(OWLEquivalentClassesAxiom axiom) {
AtomicBoolean allAnon = new AtomicBoolean(true);
axiom.classExpressions().filter(c -> !c.isAnonymous())
.map(OWLClassExpression::asOWLClass).forEach(c -> {
equivalentClassesAxiomsByClass.remove(c, axiom);
classAxiomsByClass.remove(c, axiom);
allAnon.set(false);
});
if (allAnon.get()) {
removeGeneralClassAxioms(axiom);
}
}
@Override
public void visit(OWLDataPropertyAssertionAxiom axiom) {
dataPropertyAssertionsByIndividual.remove(axiom.getSubject(), axiom);
}
@Override
public void visit(OWLTransitiveObjectPropertyAxiom axiom) {
transitivePropertyAxiomsByProperty.remove(axiom.getProperty(), axiom);
}
@Override
public void visit(OWLIrreflexiveObjectPropertyAxiom axiom) {
irreflexivePropertyAxiomsByProperty.remove(axiom.getProperty(), axiom);
}
@Override
public void visit(OWLSubDataPropertyOfAxiom axiom) {
dataSubPropertyAxiomsBySubPosition.remove(axiom.getSubProperty(), axiom);
dataSubPropertyAxiomsBySuperPosition.remove(axiom.getSuperProperty(), axiom);
}
@Override
public void visit(OWLInverseFunctionalObjectPropertyAxiom axiom) {
inverseFunctionalPropertyAxiomsByProperty.remove(axiom.getProperty(), axiom);
}
@Override
public void visit(OWLSameIndividualAxiom axiom) {
axiom.individuals().forEach(i -> sameIndividualsAxiomsByIndividual.remove(i, axiom));
}
@Override
public void visit(OWLSubPropertyChainOfAxiom axiom) {
removePropertyChainSubPropertyAxioms(axiom);
}
}
private class ReferencedAxiomsCollector
implements OWLEntityVisitorEx>, Serializable {
ReferencedAxiomsCollector() {}
@Override
public Stream visit(OWLClass cls) {
return owlClassReferences.values(cls, OWLAxiom.class);
}
@Override
public Stream visit(OWLObjectProperty property) {
return owlObjectPropertyReferences.values(property, OWLAxiom.class);
}
@Override
public Stream visit(OWLDataProperty property) {
return owlDataPropertyReferences.values(property, OWLAxiom.class);
}
@Override
public Stream visit(OWLNamedIndividual individual) {
return owlIndividualReferences.values(individual, OWLAxiom.class);
}
@Override
public Stream visit(OWLDatatype datatype) {
return owlDatatypeReferences.values(datatype, OWLAxiom.class);
}
@Override
public Stream visit(OWLAnnotationProperty property) {
return owlAnnotationPropertyReferences.values(property, OWLAxiom.class);
}
}
}
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