org.obolibrary.oboformat.diff.Diff Maven / Gradle / Ivy

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A java library for converting obo format documents to OWL, and for converting (a subset of) OWL to obo format. This version has been slightly modified to be included directly in the OWL API. The upstream code for this module and its authors can be found at https://code.google.com/p/oboformat/.

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package org.obolibrary.oboformat.diff;

import javax.annotation.Nonnull;

import org.obolibrary.oboformat.model.Clause;
import org.obolibrary.oboformat.model.Frame;

/** Diff */
public class Diff {

    String type;
    final String frameType;
    Frame frame1;
    Frame frame2;
    Clause clause1;
    Clause clause2;
    final int frameNum;

    /**
     * @param ftype
     *        ftype
     * @param type
     *        type
     * @param f1
     *        f1
     * @param n
     *        n
     */
    public Diff(String ftype, String type, Frame f1, int n) {
        this(ftype, type, f1, null, null, n);
    }

    /**
     * @param ftype
     *        ftype
     * @param type
     *        type
     * @param f1
     *        f1
     * @param f2
     *        f2
     * @param c
     *        c
     * @param n
     *        n
     */
    public Diff(String ftype, String type, Frame f1, Frame f2, Clause c, int n) {
        this.type = type;
        frame1 = f1;
        frame2 = f2;
        clause1 = c;
        frameNum = n;
        frameType = ftype;
    }

    /**
     * @return type
     */
    public String getType() {
        return type;
    }

    /**
     * @param type
     *        type
     */
    public void setType(String type) {
        this.type = type;
    }

    /**
     * @return frame1
     */
    public Frame getFrame1() {
        return frame1;
    }

    /**
     * @param frame1
     *        frame1
     */
    public void setFrame1(Frame frame1) {
        this.frame1 = frame1;
    }

    /**
     * @return frame2
     */
    public Frame getFrame2() {
        return frame2;
    }

    /**
     * @param frame2
     *        frame2
     */
    public void setFrame2(Frame frame2) {
        this.frame2 = frame2;
    }

    /**
     * @return clause1
     */
    public Clause getClause1() {
        return clause1;
    }

    /**
     * @param clause1
     *        clause1
     */
    public void setClause1(Clause clause1) {
        this.clause1 = clause1;
    }

    /**
     * @return clause2
     */
    public Clause getClause2() {
        return clause2;
    }

    /**
     * @param clause2
     *        clause2
     */
    public void setClause2(Clause clause2) {
        this.clause2 = clause2;
    }

    @Nonnull
    @Override
    public String toString() {
        return type + ' ' + frameType + " Frame1=" + (frame1 == null ? "-" : frame1.getId()) + " Frame2="
            + (frame2 == null ? "-" : frame2.getId()) + " Clause1=" + (clause1 == null ? "-" : clause1) + " Clause2="
            + (clause2 == null ? "-" : clause2) + " In=Frame" + frameNum;
    }
    /*
     * public String toOboDelta() throws IOException { Vector lines =
     * new Vector(); String line1 = null; if(frame1.getType() !=
     * frame2.getType()) { throw new
     * IOException("Frames must be of same type: "+frame1+" -vs- "+frame2); }
     * if(frame1.getType() == FrameType.TERM) line1 = "[Term]"; else
     * if(frame1.getType() == FrameType.TYPEDEF) line1 = "[Typedef]"; else
     * if(frame1.getType() == FrameType.INSTANCE) line1 = "[Instance]";
     * lines.add(line1); lines.add("id: "+frame1.getId()); if (clause1 == null)
     * { } else { lines.add("-"); } return line1 + "\n" + line2 + "\n"; }
     */
}