uk.ac.manchester.cs.owl.owlapi.Internals Maven / Gradle / Ivy
/* This file is part of the OWL API.
* The contents of this file are subject to the LGPL License, Version 3.0.
* Copyright 2014, The University of Manchester
*
* This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
* This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
* You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.
*
* Alternatively, the contents of this file may be used under the terms of the Apache License, Version 2.0 in which case, the provisions of the Apache License Version 2.0 are applicable instead of those above.
* Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at
* http://www.apache.org/licenses/LICENSE-2.0
* Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. */
package uk.ac.manchester.cs.owl.owlapi;
import static org.semanticweb.owlapi.model.AxiomType.ANNOTATION_ASSERTION;
import static org.semanticweb.owlapi.model.AxiomType.ASYMMETRIC_OBJECT_PROPERTY;
import static org.semanticweb.owlapi.model.AxiomType.AXIOM_TYPES;
import static org.semanticweb.owlapi.model.AxiomType.CLASS_ASSERTION;
import static org.semanticweb.owlapi.model.AxiomType.DATA_PROPERTY_ASSERTION;
import static org.semanticweb.owlapi.model.AxiomType.DATA_PROPERTY_DOMAIN;
import static org.semanticweb.owlapi.model.AxiomType.DATA_PROPERTY_RANGE;
import static org.semanticweb.owlapi.model.AxiomType.DIFFERENT_INDIVIDUALS;
import static org.semanticweb.owlapi.model.AxiomType.DISJOINT_CLASSES;
import static org.semanticweb.owlapi.model.AxiomType.DISJOINT_DATA_PROPERTIES;
import static org.semanticweb.owlapi.model.AxiomType.DISJOINT_OBJECT_PROPERTIES;
import static org.semanticweb.owlapi.model.AxiomType.DISJOINT_UNION;
import static org.semanticweb.owlapi.model.AxiomType.EQUIVALENT_CLASSES;
import static org.semanticweb.owlapi.model.AxiomType.EQUIVALENT_DATA_PROPERTIES;
import static org.semanticweb.owlapi.model.AxiomType.EQUIVALENT_OBJECT_PROPERTIES;
import static org.semanticweb.owlapi.model.AxiomType.FUNCTIONAL_DATA_PROPERTY;
import static org.semanticweb.owlapi.model.AxiomType.FUNCTIONAL_OBJECT_PROPERTY;
import static org.semanticweb.owlapi.model.AxiomType.HAS_KEY;
import static org.semanticweb.owlapi.model.AxiomType.INVERSE_FUNCTIONAL_OBJECT_PROPERTY;
import static org.semanticweb.owlapi.model.AxiomType.INVERSE_OBJECT_PROPERTIES;
import static org.semanticweb.owlapi.model.AxiomType.IRREFLEXIVE_OBJECT_PROPERTY;
import static org.semanticweb.owlapi.model.AxiomType.NEGATIVE_DATA_PROPERTY_ASSERTION;
import static org.semanticweb.owlapi.model.AxiomType.NEGATIVE_OBJECT_PROPERTY_ASSERTION;
import static org.semanticweb.owlapi.model.AxiomType.OBJECT_PROPERTY_ASSERTION;
import static org.semanticweb.owlapi.model.AxiomType.OBJECT_PROPERTY_DOMAIN;
import static org.semanticweb.owlapi.model.AxiomType.OBJECT_PROPERTY_RANGE;
import static org.semanticweb.owlapi.model.AxiomType.REFLEXIVE_OBJECT_PROPERTY;
import static org.semanticweb.owlapi.model.AxiomType.SAME_INDIVIDUAL;
import static org.semanticweb.owlapi.model.AxiomType.SUBCLASS_OF;
import static org.semanticweb.owlapi.model.AxiomType.SUB_DATA_PROPERTY;
import static org.semanticweb.owlapi.model.AxiomType.SUB_OBJECT_PROPERTY;
import static org.semanticweb.owlapi.model.AxiomType.SYMMETRIC_OBJECT_PROPERTY;
import static org.semanticweb.owlapi.model.AxiomType.TRANSITIVE_OBJECT_PROPERTY;
import static org.semanticweb.owlapi.util.CollectionFactory.createLinkedSet;
import static org.semanticweb.owlapi.util.CollectionFactory.createSyncSet;
import static org.semanticweb.owlapi.util.OWLAPIPreconditions.checkNotNull;
import static uk.ac.manchester.cs.owl.owlapi.InitVisitorFactory.ANNOTSUPERNAMED;
import static uk.ac.manchester.cs.owl.owlapi.InitVisitorFactory.CLASSCOLLECTIONS;
import static uk.ac.manchester.cs.owl.owlapi.InitVisitorFactory.CLASSEXPRESSIONS;
import static uk.ac.manchester.cs.owl.owlapi.InitVisitorFactory.CLASSSUBNAMED;
import static uk.ac.manchester.cs.owl.owlapi.InitVisitorFactory.CLASSSUPERNAMED;
import static uk.ac.manchester.cs.owl.owlapi.InitVisitorFactory.DPCOLLECTIONS;
import static uk.ac.manchester.cs.owl.owlapi.InitVisitorFactory.DPSUBNAMED;
import static uk.ac.manchester.cs.owl.owlapi.InitVisitorFactory.DPSUPERNAMED;
import static uk.ac.manchester.cs.owl.owlapi.InitVisitorFactory.ICOLLECTIONS;
import static uk.ac.manchester.cs.owl.owlapi.InitVisitorFactory.INDIVIDUALSUBNAMED;
import static uk.ac.manchester.cs.owl.owlapi.InitVisitorFactory.OPCOLLECTIONS;
import static uk.ac.manchester.cs.owl.owlapi.InitVisitorFactory.OPSUBNAMED;
import static uk.ac.manchester.cs.owl.owlapi.InitVisitorFactory.OPSUPERNAMED;
import java.io.IOException;
import java.io.ObjectInputStream;
import java.io.ObjectOutputStream;
import java.io.Serializable;
import java.util.ArrayList;
import java.util.Collection;
import java.util.List;
import java.util.Optional;
import java.util.Set;
import java.util.TreeSet;
import javax.annotation.Nonnull;
import javax.annotation.Nullable;
import org.semanticweb.owlapi.model.AxiomType;
import org.semanticweb.owlapi.model.EntityType;
import org.semanticweb.owlapi.model.IRI;
import org.semanticweb.owlapi.model.OWLAnnotation;
import org.semanticweb.owlapi.model.OWLAnnotationAssertionAxiom;
import org.semanticweb.owlapi.model.OWLAnnotationProperty;
import org.semanticweb.owlapi.model.OWLAnnotationSubject;
import org.semanticweb.owlapi.model.OWLAnonymousIndividual;
import org.semanticweb.owlapi.model.OWLAsymmetricObjectPropertyAxiom;
import org.semanticweb.owlapi.model.OWLAxiom;
import org.semanticweb.owlapi.model.OWLAxiomVisitorEx;
import org.semanticweb.owlapi.model.OWLClass;
import org.semanticweb.owlapi.model.OWLClassAssertionAxiom;
import org.semanticweb.owlapi.model.OWLClassAxiom;
import org.semanticweb.owlapi.model.OWLClassExpression;
import org.semanticweb.owlapi.model.OWLDataProperty;
import org.semanticweb.owlapi.model.OWLDataPropertyAssertionAxiom;
import org.semanticweb.owlapi.model.OWLDataPropertyDomainAxiom;
import org.semanticweb.owlapi.model.OWLDataPropertyExpression;
import org.semanticweb.owlapi.model.OWLDataPropertyRangeAxiom;
import org.semanticweb.owlapi.model.OWLDatatype;
import org.semanticweb.owlapi.model.OWLDeclarationAxiom;
import org.semanticweb.owlapi.model.OWLDifferentIndividualsAxiom;
import org.semanticweb.owlapi.model.OWLDisjointClassesAxiom;
import org.semanticweb.owlapi.model.OWLDisjointDataPropertiesAxiom;
import org.semanticweb.owlapi.model.OWLDisjointObjectPropertiesAxiom;
import org.semanticweb.owlapi.model.OWLDisjointUnionAxiom;
import org.semanticweb.owlapi.model.OWLEntity;
import org.semanticweb.owlapi.model.OWLEntityVisitorEx;
import org.semanticweb.owlapi.model.OWLEquivalentClassesAxiom;
import org.semanticweb.owlapi.model.OWLEquivalentDataPropertiesAxiom;
import org.semanticweb.owlapi.model.OWLEquivalentObjectPropertiesAxiom;
import org.semanticweb.owlapi.model.OWLFunctionalDataPropertyAxiom;
import org.semanticweb.owlapi.model.OWLFunctionalObjectPropertyAxiom;
import org.semanticweb.owlapi.model.OWLHasKeyAxiom;
import org.semanticweb.owlapi.model.OWLImportsDeclaration;
import org.semanticweb.owlapi.model.OWLIndividual;
import org.semanticweb.owlapi.model.OWLInverseFunctionalObjectPropertyAxiom;
import org.semanticweb.owlapi.model.OWLInverseObjectPropertiesAxiom;
import org.semanticweb.owlapi.model.OWLIrreflexiveObjectPropertyAxiom;
import org.semanticweb.owlapi.model.OWLLogicalAxiom;
import org.semanticweb.owlapi.model.OWLNamedIndividual;
import org.semanticweb.owlapi.model.OWLNegativeDataPropertyAssertionAxiom;
import org.semanticweb.owlapi.model.OWLNegativeObjectPropertyAssertionAxiom;
import org.semanticweb.owlapi.model.OWLObject;
import org.semanticweb.owlapi.model.OWLObjectProperty;
import org.semanticweb.owlapi.model.OWLObjectPropertyAssertionAxiom;
import org.semanticweb.owlapi.model.OWLObjectPropertyDomainAxiom;
import org.semanticweb.owlapi.model.OWLObjectPropertyExpression;
import org.semanticweb.owlapi.model.OWLObjectPropertyRangeAxiom;
import org.semanticweb.owlapi.model.OWLReflexiveObjectPropertyAxiom;
import org.semanticweb.owlapi.model.OWLSameIndividualAxiom;
import org.semanticweb.owlapi.model.OWLSubClassOfAxiom;
import org.semanticweb.owlapi.model.OWLSubDataPropertyOfAxiom;
import org.semanticweb.owlapi.model.OWLSubObjectPropertyOfAxiom;
import org.semanticweb.owlapi.model.OWLSubPropertyChainOfAxiom;
import org.semanticweb.owlapi.model.OWLSymmetricObjectPropertyAxiom;
import org.semanticweb.owlapi.model.OWLTransitiveObjectPropertyAxiom;
import org.semanticweb.owlapi.model.parameters.Navigation;
import org.semanticweb.owlapi.search.Filters;
import org.semanticweb.owlapi.util.OWLAxiomSearchFilter;
import org.semanticweb.owlapi.util.OWLAxiomVisitorAdapter;
import com.google.common.collect.Iterables;
/**
* @author ignazio
*/
public class Internals implements Serializable {
private static final long serialVersionUID = 40000L;
private class ReferenceChecker implements OWLEntityVisitorEx, Serializable {
private static final long serialVersionUID = 40000L;
ReferenceChecker() {}
@Override
public Boolean visit(OWLClass cls) {
return Boolean.valueOf(owlClassReferences.containsKey(cls));
}
@Override
public Boolean visit(OWLObjectProperty property) {
return Boolean.valueOf(owlObjectPropertyReferences.containsKey(property));
}
@Override
public Boolean visit(OWLDataProperty property) {
return Boolean.valueOf(owlDataPropertyReferences.containsKey(property));
}
@Override
public Boolean visit(OWLNamedIndividual individual) {
return Boolean.valueOf(owlIndividualReferences.containsKey(individual));
}
@Override
public Boolean visit(OWLDatatype datatype) {
return Boolean.valueOf(owlDatatypeReferences.containsKey(datatype));
}
@Override
public Boolean visit(OWLAnnotationProperty property) {
return Boolean.valueOf(owlAnnotationPropertyReferences.containsKey(property));
}
}
protected class SetPointer implements Serializable {
private static final long serialVersionUID = 40000L;
@Nonnull
private final Set set = createSyncSet();
public boolean isEmpty() {
return set.isEmpty();
}
@Nonnull
public Set copy() {
return new TreeSet<>(set);
}
@Nonnull
public Collection iterable() {
return set;
}
public boolean add(K k) {
return set.add(k);
}
public boolean contains(K k) {
return set.contains(k);
}
public boolean remove(K k) {
return set.remove(k);
}
}
//@formatter:off
@Nonnull protected transient MapPointer classAssertionAxiomsByClass = buildLazy(CLASS_ASSERTION, CLASSEXPRESSIONS);
@Nonnull protected transient MapPointer annotationAssertionAxiomsBySubject = buildLazy(ANNOTATION_ASSERTION, ANNOTSUPERNAMED);
@Nonnull protected transient MapPointer subClassAxiomsBySubPosition = buildLazy(SUBCLASS_OF, CLASSSUBNAMED);
@Nonnull protected transient MapPointer subClassAxiomsBySuperPosition = buildLazy(SUBCLASS_OF, CLASSSUPERNAMED);
@Nonnull protected transient MapPointer objectSubPropertyAxiomsBySubPosition = buildLazy(SUB_OBJECT_PROPERTY, OPSUBNAMED);
@Nonnull protected transient MapPointer objectSubPropertyAxiomsBySuperPosition = buildLazy(SUB_OBJECT_PROPERTY, OPSUPERNAMED);
@Nonnull protected transient MapPointer dataSubPropertyAxiomsBySubPosition = buildLazy(SUB_DATA_PROPERTY, DPSUBNAMED);
@Nonnull protected transient MapPointer dataSubPropertyAxiomsBySuperPosition = buildLazy(SUB_DATA_PROPERTY, DPSUPERNAMED);
@Nonnull protected transient MapPointer classAxiomsByClass = buildClassAxiomByClass();
@Nonnull protected transient MapPointer equivalentClassesAxiomsByClass = buildLazy(EQUIVALENT_CLASSES, CLASSCOLLECTIONS);
@Nonnull protected transient MapPointer disjointClassesAxiomsByClass = buildLazy(DISJOINT_CLASSES, CLASSCOLLECTIONS);
@Nonnull protected transient MapPointer disjointUnionAxiomsByClass = buildLazy(DISJOINT_UNION, CLASSCOLLECTIONS);
@Nonnull protected transient MapPointer hasKeyAxiomsByClass = buildLazy(HAS_KEY, CLASSSUPERNAMED);
@Nonnull protected transient MapPointer equivalentObjectPropertyAxiomsByProperty = buildLazy(EQUIVALENT_OBJECT_PROPERTIES, OPCOLLECTIONS);
@Nonnull protected transient MapPointer disjointObjectPropertyAxiomsByProperty = buildLazy(DISJOINT_OBJECT_PROPERTIES, OPCOLLECTIONS);
@Nonnull protected transient MapPointer objectPropertyDomainAxiomsByProperty = buildLazy(OBJECT_PROPERTY_DOMAIN, OPSUBNAMED);
@Nonnull protected transient MapPointer objectPropertyRangeAxiomsByProperty = buildLazy(OBJECT_PROPERTY_RANGE, OPSUBNAMED);
@Nonnull protected transient MapPointer functionalObjectPropertyAxiomsByProperty = buildLazy(FUNCTIONAL_OBJECT_PROPERTY, OPSUBNAMED);
@Nonnull protected transient MapPointerinverseFunctionalPropertyAxiomsByProperty = buildLazy(INVERSE_FUNCTIONAL_OBJECT_PROPERTY, OPSUBNAMED);
@Nonnull protected transient MapPointer symmetricPropertyAxiomsByProperty = buildLazy(SYMMETRIC_OBJECT_PROPERTY, OPSUBNAMED);
@Nonnull protected transient MapPointer asymmetricPropertyAxiomsByProperty = buildLazy(ASYMMETRIC_OBJECT_PROPERTY, OPSUBNAMED);
@Nonnull protected transient MapPointer reflexivePropertyAxiomsByProperty = buildLazy(REFLEXIVE_OBJECT_PROPERTY, OPSUBNAMED);
@Nonnull protected transient MapPointer irreflexivePropertyAxiomsByProperty = buildLazy(IRREFLEXIVE_OBJECT_PROPERTY, OPSUBNAMED);
@Nonnull protected transient MapPointer transitivePropertyAxiomsByProperty = buildLazy(TRANSITIVE_OBJECT_PROPERTY, OPSUBNAMED);
@Nonnull protected transient MapPointer inversePropertyAxiomsByProperty = buildLazy(INVERSE_OBJECT_PROPERTIES, OPCOLLECTIONS);
@Nonnull protected transient MapPointer equivalentDataPropertyAxiomsByProperty = buildLazy(EQUIVALENT_DATA_PROPERTIES, DPCOLLECTIONS);
@Nonnull protected transient MapPointer disjointDataPropertyAxiomsByProperty = buildLazy(DISJOINT_DATA_PROPERTIES, DPCOLLECTIONS);
@Nonnull protected transient MapPointer dataPropertyDomainAxiomsByProperty = buildLazy(DATA_PROPERTY_DOMAIN, DPSUBNAMED);
@Nonnull protected transient MapPointer dataPropertyRangeAxiomsByProperty = buildLazy(DATA_PROPERTY_RANGE, DPSUBNAMED);
@Nonnull protected transient MapPointer functionalDataPropertyAxiomsByProperty = buildLazy(FUNCTIONAL_DATA_PROPERTY, DPSUBNAMED);
@Nonnull protected transient MapPointer classAssertionAxiomsByIndividual = buildLazy(CLASS_ASSERTION, INDIVIDUALSUBNAMED);
@Nonnull protected transient MapPointer objectPropertyAssertionsByIndividual = buildLazy(OBJECT_PROPERTY_ASSERTION, INDIVIDUALSUBNAMED);
@Nonnull protected transient MapPointer dataPropertyAssertionsByIndividual = buildLazy(DATA_PROPERTY_ASSERTION, INDIVIDUALSUBNAMED);
@Nonnull protected transient MapPointer negativeObjectPropertyAssertionAxiomsByIndividual = buildLazy(NEGATIVE_OBJECT_PROPERTY_ASSERTION, INDIVIDUALSUBNAMED);
@Nonnull protected transient MapPointer negativeDataPropertyAssertionAxiomsByIndividual = buildLazy(NEGATIVE_DATA_PROPERTY_ASSERTION, INDIVIDUALSUBNAMED);
@Nonnull protected transient MapPointer differentIndividualsAxiomsByIndividual = buildLazy(DIFFERENT_INDIVIDUALS, ICOLLECTIONS);
@Nonnull protected transient MapPointer sameIndividualsAxiomsByIndividual = buildLazy(SAME_INDIVIDUAL, ICOLLECTIONS);
@Nonnull protected SetPointer importsDeclarations = new SetPointer<>();
@Nonnull protected SetPointer ontologyAnnotations = new SetPointer<>();
@Nonnull protected SetPointer generalClassAxioms = new SetPointer<>();
@Nonnull protected SetPointer propertyChainSubPropertyAxioms = new SetPointer<>();
@Nonnull protected transient MapPointer, OWLAxiom> axiomsByType = build();
@Nonnull protected transient MapPointer owlClassReferences = build();
@Nonnull protected transient MapPointer owlObjectPropertyReferences = build();
@Nonnull protected transient MapPointer owlDataPropertyReferences = build();
@Nonnull protected transient MapPointer owlIndividualReferences = build();
@Nonnull protected transient MapPointer owlAnonymousIndividualReferences = build();
@Nonnull protected transient MapPointer owlDatatypeReferences = build();
@Nonnull protected transient MapPointer owlAnnotationPropertyReferences = build();
@Nonnull protected transient MapPointer declarationsByEntity = build();
//@formatter:on
@Nullable
private List axiomsForSerialization;
@SuppressWarnings("null")
private void readObject(ObjectInputStream stream) throws IOException, ClassNotFoundException {
stream.defaultReadObject();
axiomsByType = build();
owlClassReferences = build();
owlObjectPropertyReferences = build();
owlDataPropertyReferences = build();
owlIndividualReferences = build();
owlAnonymousIndividualReferences = build();
owlDatatypeReferences = build();
owlAnnotationPropertyReferences = build();
declarationsByEntity = build();
classAssertionAxiomsByClass = buildLazy(CLASS_ASSERTION, CLASSEXPRESSIONS);
annotationAssertionAxiomsBySubject = buildLazy(ANNOTATION_ASSERTION, ANNOTSUPERNAMED);
subClassAxiomsBySubPosition = buildLazy(SUBCLASS_OF, CLASSSUBNAMED);
subClassAxiomsBySuperPosition = buildLazy(SUBCLASS_OF, CLASSSUPERNAMED);
objectSubPropertyAxiomsBySubPosition = buildLazy(SUB_OBJECT_PROPERTY, OPSUBNAMED);
objectSubPropertyAxiomsBySuperPosition = buildLazy(SUB_OBJECT_PROPERTY, OPSUPERNAMED);
dataSubPropertyAxiomsBySubPosition = buildLazy(SUB_DATA_PROPERTY, DPSUBNAMED);
dataSubPropertyAxiomsBySuperPosition = buildLazy(SUB_DATA_PROPERTY, DPSUPERNAMED);
classAxiomsByClass = buildClassAxiomByClass();
equivalentClassesAxiomsByClass = buildLazy(EQUIVALENT_CLASSES, CLASSCOLLECTIONS);
disjointClassesAxiomsByClass = buildLazy(DISJOINT_CLASSES, CLASSCOLLECTIONS);
disjointUnionAxiomsByClass = buildLazy(DISJOINT_UNION, CLASSCOLLECTIONS);
hasKeyAxiomsByClass = buildLazy(HAS_KEY, CLASSSUPERNAMED);
equivalentObjectPropertyAxiomsByProperty =
buildLazy(EQUIVALENT_OBJECT_PROPERTIES, OPCOLLECTIONS);
disjointObjectPropertyAxiomsByProperty =
buildLazy(DISJOINT_OBJECT_PROPERTIES, OPCOLLECTIONS);
objectPropertyDomainAxiomsByProperty = buildLazy(OBJECT_PROPERTY_DOMAIN, OPSUBNAMED);
objectPropertyRangeAxiomsByProperty = buildLazy(OBJECT_PROPERTY_RANGE, OPSUBNAMED);
functionalObjectPropertyAxiomsByProperty =
buildLazy(FUNCTIONAL_OBJECT_PROPERTY, OPSUBNAMED);
inverseFunctionalPropertyAxiomsByProperty =
buildLazy(INVERSE_FUNCTIONAL_OBJECT_PROPERTY, OPSUBNAMED);
symmetricPropertyAxiomsByProperty = buildLazy(SYMMETRIC_OBJECT_PROPERTY, OPSUBNAMED);
asymmetricPropertyAxiomsByProperty = buildLazy(ASYMMETRIC_OBJECT_PROPERTY, OPSUBNAMED);
reflexivePropertyAxiomsByProperty = buildLazy(REFLEXIVE_OBJECT_PROPERTY, OPSUBNAMED);
irreflexivePropertyAxiomsByProperty = buildLazy(IRREFLEXIVE_OBJECT_PROPERTY, OPSUBNAMED);
transitivePropertyAxiomsByProperty = buildLazy(TRANSITIVE_OBJECT_PROPERTY, OPSUBNAMED);
inversePropertyAxiomsByProperty = buildLazy(INVERSE_OBJECT_PROPERTIES, OPCOLLECTIONS);
equivalentDataPropertyAxiomsByProperty =
buildLazy(EQUIVALENT_DATA_PROPERTIES, DPCOLLECTIONS);
disjointDataPropertyAxiomsByProperty = buildLazy(DISJOINT_DATA_PROPERTIES, DPCOLLECTIONS);
dataPropertyDomainAxiomsByProperty = buildLazy(DATA_PROPERTY_DOMAIN, DPSUBNAMED);
dataPropertyRangeAxiomsByProperty = buildLazy(DATA_PROPERTY_RANGE, DPSUBNAMED);
functionalDataPropertyAxiomsByProperty = buildLazy(FUNCTIONAL_DATA_PROPERTY, DPSUBNAMED);
classAssertionAxiomsByIndividual = buildLazy(CLASS_ASSERTION, INDIVIDUALSUBNAMED);
objectPropertyAssertionsByIndividual =
buildLazy(OBJECT_PROPERTY_ASSERTION, INDIVIDUALSUBNAMED);
dataPropertyAssertionsByIndividual = buildLazy(DATA_PROPERTY_ASSERTION, INDIVIDUALSUBNAMED);
negativeObjectPropertyAssertionAxiomsByIndividual =
buildLazy(NEGATIVE_OBJECT_PROPERTY_ASSERTION, INDIVIDUALSUBNAMED);
negativeDataPropertyAssertionAxiomsByIndividual =
buildLazy(NEGATIVE_DATA_PROPERTY_ASSERTION, INDIVIDUALSUBNAMED);
differentIndividualsAxiomsByIndividual = buildLazy(DIFFERENT_INDIVIDUALS, ICOLLECTIONS);
sameIndividualsAxiomsByIndividual = buildLazy(SAME_INDIVIDUAL, ICOLLECTIONS);
for (OWLAxiom ax : axiomsForSerialization) {
addAxiom(ax);
}
axiomsForSerialization = null;
}
/**
* @param type entity type
* @return true if there are entities of the specified type referred
*/
public boolean anyEntities(EntityType type) {
if (EntityType.CLASS.equals(type)) {
return !owlClassReferences.isEmpty();
}
if (EntityType.DATA_PROPERTY.equals(type)) {
return !owlDataPropertyReferences.isEmpty();
}
if (EntityType.OBJECT_PROPERTY.equals(type)) {
return !owlObjectPropertyReferences.isEmpty();
}
if (EntityType.ANNOTATION_PROPERTY.equals(type)) {
return !owlAnnotationPropertyReferences.isEmpty();
}
if (EntityType.DATATYPE.equals(type)) {
return !owlDatatypeReferences.isEmpty();
}
if (EntityType.NAMED_INDIVIDUAL.equals(type)) {
return !owlIndividualReferences.isEmpty();
}
return false;
}
/**
* Trims the capacity of the axiom indexes . An application can use this operation to minimize
* the storage of the internals instance.
*/
public void trimToSize() {
axiomsByType.trimToSize();
owlClassReferences.trimToSize();
owlObjectPropertyReferences.trimToSize();
owlDataPropertyReferences.trimToSize();
owlIndividualReferences.trimToSize();
owlAnonymousIndividualReferences.trimToSize();
owlDatatypeReferences.trimToSize();
owlAnnotationPropertyReferences.trimToSize();
declarationsByEntity.trimToSize();
classAssertionAxiomsByClass.trimToSize();
annotationAssertionAxiomsBySubject.trimToSize();
subClassAxiomsBySubPosition.trimToSize();
subClassAxiomsBySuperPosition.trimToSize();
objectSubPropertyAxiomsBySubPosition.trimToSize();
objectSubPropertyAxiomsBySuperPosition.trimToSize();
dataSubPropertyAxiomsBySubPosition.trimToSize();
dataSubPropertyAxiomsBySuperPosition.trimToSize();
classAxiomsByClass.trimToSize();
equivalentClassesAxiomsByClass.trimToSize();
disjointClassesAxiomsByClass.trimToSize();
disjointUnionAxiomsByClass.trimToSize();
hasKeyAxiomsByClass.trimToSize();
equivalentObjectPropertyAxiomsByProperty.trimToSize();
disjointObjectPropertyAxiomsByProperty.trimToSize();
objectPropertyDomainAxiomsByProperty.trimToSize();
objectPropertyRangeAxiomsByProperty.trimToSize();
functionalObjectPropertyAxiomsByProperty.trimToSize();
inverseFunctionalPropertyAxiomsByProperty.trimToSize();
symmetricPropertyAxiomsByProperty.trimToSize();
asymmetricPropertyAxiomsByProperty.trimToSize();
reflexivePropertyAxiomsByProperty.trimToSize();
irreflexivePropertyAxiomsByProperty.trimToSize();
transitivePropertyAxiomsByProperty.trimToSize();
inversePropertyAxiomsByProperty.trimToSize();
equivalentDataPropertyAxiomsByProperty.trimToSize();
disjointDataPropertyAxiomsByProperty.trimToSize();
dataPropertyDomainAxiomsByProperty.trimToSize();
dataPropertyRangeAxiomsByProperty.trimToSize();
functionalDataPropertyAxiomsByProperty.trimToSize();
classAssertionAxiomsByIndividual.trimToSize();
objectPropertyAssertionsByIndividual.trimToSize();
dataPropertyAssertionsByIndividual.trimToSize();
negativeObjectPropertyAssertionAxiomsByIndividual.trimToSize();
negativeDataPropertyAssertionAxiomsByIndividual.trimToSize();
differentIndividualsAxiomsByIndividual.trimToSize();
sameIndividualsAxiomsByIndividual.trimToSize();
}
private void writeObject(ObjectOutputStream stream) throws IOException {
axiomsForSerialization = new ArrayList<>();
axiomsByType.getAllValues().forEach(axiomsForSerialization::add);
stream.defaultWriteObject();
}
@Nonnull
private final AddAxiomVisitor addChangeVisitor = new AddAxiomVisitor();
@Nonnull
private final RemoveAxiomVisitor removeChangeVisitor = new RemoveAxiomVisitor();
@Nonnull
private final ReferenceChecker refChecker = new ReferenceChecker();
@Nonnull
private final ReferencedAxiomsCollector refAxiomsCollector = new ReferencedAxiomsCollector();
/**
* @param i iri
* @return true if a class with this iri exists
*/
public boolean containsClassInSignature(IRI i) {
return owlClassReferences.containsReference(i);
}
/**
* @param i iri
* @return true if an object property with this iri exists
*/
public boolean containsObjectPropertyInSignature(IRI i) {
return owlObjectPropertyReferences.containsReference(i);
}
/**
* @param i iri
* @return true if a data property with this iri exists
*/
public boolean containsDataPropertyInSignature(IRI i) {
return owlDataPropertyReferences.containsReference(i);
}
/**
* @param i iri
* @return true if an annotation property with this iri exists
*/
public boolean containsAnnotationPropertyInSignature(IRI i) {
return owlAnnotationPropertyReferences.containsReference(i);
}
/**
* @param i iri
* @return true if a individual with this iri exists
*/
public boolean containsIndividualInSignature(IRI i) {
return owlIndividualReferences.containsReference(i);
}
/**
* @param i iri
* @return true if a datatype with this iri exists
*/
public boolean containsDatatypeInSignature(IRI i) {
return owlDatatypeReferences.containsReference(i);
}
/**
* @param i iri
* @return true if a class with this iri exists
*/
public boolean containsClassInSignature(OWLClass i) {
return owlClassReferences.containsReference(i);
}
/**
* @param i iri
* @return true if an object property with this iri exists
*/
public boolean containsObjectPropertyInSignature(OWLObjectProperty i) {
return owlObjectPropertyReferences.containsReference(i);
}
/**
* @param i iri
* @return true if a data property with this iri exists
*/
public boolean containsDataPropertyInSignature(OWLDataProperty i) {
return owlDataPropertyReferences.containsReference(i);
}
/**
* @param i iri
* @return true if an annotation property with this iri exists
*/
public boolean containsAnnotationPropertyInSignature(OWLAnnotationProperty i) {
return owlAnnotationPropertyReferences.containsReference(i);
}
/**
* @param i iri
* @return true if a individual with this iri exists
*/
public boolean containsIndividualInSignature(OWLNamedIndividual i) {
return owlIndividualReferences.containsReference(i);
}
/**
* @param i iri
* @return true if a datatype with this iri exists
*/
public boolean containsDatatypeInSignature(OWLDatatype i) {
return owlDatatypeReferences.containsReference(i);
}
/**
* @param type type of map key
* @param axiom class of axiom indexed
* @param key type
* @param value type
* @return map pointer matching the search, or null if there is not one
*/
// not always not null, but supposed to
@Nonnull
Optional> get(@Nonnull Class type,
@Nonnull Class axiom) {
return get(type, axiom, Navigation.IN_SUB_POSITION);
}
/**
* @param type type of map key
* @param axiom class of axiom indexed
* @param position for axioms with a left/right distinction, IN_SUPER_POSITION means right index
* @param key type
* @param value type
* @return map pointer matching the search, or null if there is not one
*/
// not always not null, but supposed to be
@Nonnull
@SuppressWarnings({"unchecked",})
Optional> get(@Nonnull Class type,
@Nonnull Class axiom, Navigation position) {
if (OWLEntity.class.isAssignableFrom(type) && axiom.equals(OWLDeclarationAxiom.class)) {
return Optional.of((MapPointer) declarationsByEntity);
}
if (type.equals(OWLClass.class) && axiom.equals(OWLAxiom.class)) {
return Optional.of((MapPointer) owlClassReferences);
}
if (type.equals(OWLObjectProperty.class) && axiom.equals(OWLAxiom.class)) {
return Optional.of((MapPointer) owlObjectPropertyReferences);
}
if (type.equals(OWLDataProperty.class) && axiom.equals(OWLAxiom.class)) {
return Optional.of((MapPointer) owlDataPropertyReferences);
}
if (type.equals(OWLNamedIndividual.class) && axiom.equals(OWLAxiom.class)) {
return Optional.of((MapPointer) owlIndividualReferences);
}
if (type.equals(OWLAnonymousIndividual.class) && axiom.equals(OWLAxiom.class)) {
return Optional.of((MapPointer) owlAnonymousIndividualReferences);
}
if (type.equals(OWLDatatype.class) && axiom.equals(OWLAxiom.class)) {
return Optional.of((MapPointer) owlDatatypeReferences);
}
if (type.equals(OWLAnnotationProperty.class) && axiom.equals(OWLAxiom.class)) {
return Optional.of((MapPointer) owlAnnotationPropertyReferences);
}
if (type.equals(OWLClassExpression.class)) {
return Optional.of((MapPointer) classAssertionAxiomsByClass);
}
if (type.equals(OWLObjectPropertyExpression.class)) {
if (axiom.equals(OWLSubObjectPropertyOfAxiom.class)) {
if (position == Navigation.IN_SUPER_POSITION) {
return Optional.of((MapPointer) objectSubPropertyAxiomsBySuperPosition);
} else {
return Optional.of((MapPointer) objectSubPropertyAxiomsBySubPosition);
}
}
if (axiom.equals(OWLEquivalentObjectPropertiesAxiom.class)) {
return Optional.of((MapPointer) equivalentObjectPropertyAxiomsByProperty);
}
if (axiom.equals(OWLDisjointObjectPropertiesAxiom.class)) {
return Optional.of((MapPointer) disjointObjectPropertyAxiomsByProperty);
}
if (axiom.equals(OWLObjectPropertyDomainAxiom.class)) {
return Optional.of((MapPointer) objectPropertyDomainAxiomsByProperty);
}
if (axiom.equals(OWLObjectPropertyRangeAxiom.class)) {
return Optional.of((MapPointer) objectPropertyRangeAxiomsByProperty);
}
if (axiom.equals(OWLFunctionalObjectPropertyAxiom.class)) {
return Optional.of((MapPointer) functionalObjectPropertyAxiomsByProperty);
}
if (axiom.equals(OWLInverseFunctionalObjectPropertyAxiom.class)) {
return Optional.of((MapPointer) inverseFunctionalPropertyAxiomsByProperty);
}
if (axiom.equals(OWLSymmetricObjectPropertyAxiom.class)) {
return Optional.of((MapPointer) symmetricPropertyAxiomsByProperty);
}
if (axiom.equals(OWLAsymmetricObjectPropertyAxiom.class)) {
return Optional.of((MapPointer) asymmetricPropertyAxiomsByProperty);
}
if (axiom.equals(OWLReflexiveObjectPropertyAxiom.class)) {
return Optional.of((MapPointer) reflexivePropertyAxiomsByProperty);
}
if (axiom.equals(OWLIrreflexiveObjectPropertyAxiom.class)) {
return Optional.of((MapPointer) irreflexivePropertyAxiomsByProperty);
}
if (axiom.equals(OWLTransitiveObjectPropertyAxiom.class)) {
return Optional.of((MapPointer) transitivePropertyAxiomsByProperty);
}
if (axiom.equals(OWLInverseObjectPropertiesAxiom.class)) {
return Optional.of((MapPointer) inversePropertyAxiomsByProperty);
}
}
if (type.equals(OWLDataPropertyExpression.class)) {
if (axiom.equals(OWLSubDataPropertyOfAxiom.class)) {
if (position == Navigation.IN_SUPER_POSITION) {
return Optional.of((MapPointer) dataSubPropertyAxiomsBySuperPosition);
} else {
return Optional.of((MapPointer) dataSubPropertyAxiomsBySubPosition);
}
}
if (axiom.equals(OWLEquivalentDataPropertiesAxiom.class)) {
return Optional.of((MapPointer) equivalentDataPropertyAxiomsByProperty);
}
if (axiom.equals(OWLDisjointDataPropertiesAxiom.class)) {
return Optional.of((MapPointer) disjointDataPropertyAxiomsByProperty);
}
if (axiom.equals(OWLDataPropertyDomainAxiom.class)) {
return Optional.of((MapPointer) dataPropertyDomainAxiomsByProperty);
}
if (axiom.equals(OWLDataPropertyRangeAxiom.class)) {
return Optional.of((MapPointer) dataPropertyRangeAxiomsByProperty);
}
if (axiom.equals(OWLFunctionalDataPropertyAxiom.class)) {
return Optional.of((MapPointer) functionalDataPropertyAxiomsByProperty);
}
}
if (type.equals(OWLAnnotationSubject.class) || type.equals(IRI.class)) {
return Optional.of((MapPointer) annotationAssertionAxiomsBySubject);
}
if (type.equals(OWLIndividual.class)) {
if (axiom.equals(OWLClassAssertionAxiom.class)) {
return Optional.of((MapPointer) classAssertionAxiomsByIndividual);
}
if (axiom.equals(OWLObjectPropertyAssertionAxiom.class)) {
return Optional.of((MapPointer) objectPropertyAssertionsByIndividual);
}
if (axiom.equals(OWLDataPropertyAssertionAxiom.class)) {
return Optional.of((MapPointer) dataPropertyAssertionsByIndividual);
}
if (axiom.equals(OWLNegativeObjectPropertyAssertionAxiom.class)) {
return Optional
.of((MapPointer) negativeObjectPropertyAssertionAxiomsByIndividual);
}
if (axiom.equals(OWLNegativeDataPropertyAssertionAxiom.class)) {
return Optional
.of((MapPointer) negativeDataPropertyAssertionAxiomsByIndividual);
}
if (axiom.equals(OWLDifferentIndividualsAxiom.class)) {
return Optional.of((MapPointer) differentIndividualsAxiomsByIndividual);
}
if (axiom.equals(OWLSameIndividualAxiom.class)) {
return Optional.of((MapPointer) sameIndividualsAxiomsByIndividual);
}
}
if (type.equals(OWLClass.class)) {
if (axiom.equals(OWLSubClassOfAxiom.class)) {
if (position == Navigation.IN_SUPER_POSITION) {
return Optional.of((MapPointer) subClassAxiomsBySuperPosition);
} else {
return Optional.of((MapPointer) subClassAxiomsBySubPosition);
}
}
if (axiom.equals(OWLClassAxiom.class)) {
return Optional.of((MapPointer) classAxiomsByClass);
}
if (axiom.equals(OWLEquivalentClassesAxiom.class)) {
return Optional.of((MapPointer) equivalentClassesAxiomsByClass);
}
if (axiom.equals(OWLDisjointClassesAxiom.class)) {
return Optional.of((MapPointer) disjointClassesAxiomsByClass);
}
if (axiom.equals(OWLDisjointUnionAxiom.class)) {
return Optional.of((MapPointer) disjointUnionAxiomsByClass);
}
if (axiom.equals(OWLHasKeyAxiom.class)) {
return Optional.of((MapPointer) hasKeyAxiomsByClass);
}
}
return Optional.empty();
}
@Nonnull
protected MapPointer build() {
return build(null, null);
}
@Nonnull
protected MapPointer buildLazy(AxiomType t,
OWLAxiomVisitorEx v) {
return new MapPointer<>(t, v, false, this);
}
@Nonnull
protected ClassAxiomByClassPointer buildClassAxiomByClass() {
return new ClassAxiomByClassPointer(null, null, false, this);
}
@Nonnull
protected MapPointer build(AxiomType t,
OWLAxiomVisitorEx v) {
return new MapPointer<>(t, v, true, this);
}
/**
* @param axiom axiom to add
* @return true if the axiom was not already included
*/
public boolean addAxiom(@Nonnull final OWLAxiom axiom) {
checkNotNull(axiom, "axiom cannot be null");
if (getAxiomsByType().put(axiom.getAxiomType(), axiom)) {
axiom.accept(addChangeVisitor);
axiom.accept(new AbstractEntityRegistrationManager() {
@Override
public void visit(OWLClass ce) {
owlClassReferences.put(ce, axiom);
}
@Override
public void visit(OWLObjectProperty property) {
owlObjectPropertyReferences.put(property, axiom);
}
@Override
public void visit(OWLDataProperty property) {
owlDataPropertyReferences.put(property, axiom);
}
@Override
public void visit(OWLNamedIndividual individual) {
owlIndividualReferences.put(individual, axiom);
}
@Override
public void visit(OWLAnnotationProperty property) {
owlAnnotationPropertyReferences.put(property, axiom);
}
@Override
public void visit(OWLDatatype node) {
owlDatatypeReferences.put(node, axiom);
}
@Override
public void visit(OWLAnonymousIndividual individual) {
owlAnonymousIndividualReferences.put(individual, axiom);
}
});
return true;
}
return false;
}
/**
* @param axiom axiom to remove
* @return true if removed
*/
public boolean removeAxiom(@Nonnull final OWLAxiom axiom) {
checkNotNull(axiom, "axiom cannot be null");
if (getAxiomsByType().remove(axiom.getAxiomType(), axiom)) {
axiom.accept(removeChangeVisitor);
AbstractEntityRegistrationManager referenceRemover =
new AbstractEntityRegistrationManager() {
@Override
public void visit(OWLClass ce) {
owlClassReferences.remove(ce, axiom);
}
@Override
public void visit(OWLObjectProperty property) {
owlObjectPropertyReferences.remove(property, axiom);
}
@Override
public void visit(OWLDataProperty property) {
owlDataPropertyReferences.remove(property, axiom);
}
@Override
public void visit(OWLNamedIndividual individual) {
owlIndividualReferences.remove(individual, axiom);
}
@Override
public void visit(OWLAnnotationProperty property) {
owlAnnotationPropertyReferences.remove(property, axiom);
}
@Override
public void visit(OWLDatatype node) {
owlDatatypeReferences.remove(node, axiom);
}
@Override
public void visit(OWLAnonymousIndividual individual) {
owlAnonymousIndividualReferences.remove(individual, axiom);
}
};
axiom.accept(referenceRemover);
return true;
}
return false;
}
/**
* @param e entity to check
* @return true if the entity is declared in the ontology
*/
public boolean isDeclared(OWLEntity e) {
return declarationsByEntity.containsKey(e);
}
/**
* @return true if empty
*/
public boolean isEmpty() {
return axiomsByType.isEmpty() && ontologyAnnotations.isEmpty();
}
/**
* @param filter filter to satisfy
* @param key type
* @param key key
* @return set of values
*/
@Nonnull
public Collection filterAxioms(@Nonnull OWLAxiomSearchFilter filter,
@Nonnull K key) {
if (filter == Filters.annotations) {
Optional> mapPointerOptional =
get(OWLAnnotationSubject.class, OWLAnnotationAssertionAxiom.class);
if (mapPointerOptional.isPresent()) {
MapPointer mapPointer =
mapPointerOptional.get();
return mapPointer.getValues((OWLAnnotationSubject) key);
}
}
return getAxiomsByType().filterAxioms(filter, key);
}
/**
* @param key type
* @param filter filter to satisfy
* @param key key to match
* @return true if the filter is matched at least once
*/
public boolean contains(@Nonnull OWLAxiomSearchFilter filter, @Nonnull K key) {
for (AxiomType at : filter.getAxiomTypes()) {
for (OWLAxiom t : getAxiomsByType().getValues(at)) {
assert t != null;
if (filter.pass(t, key)) {
return true;
}
}
}
return false;
}
/**
* @param copy true if a copy of the set should be returned, false for a non defensive copy (to
* be used only by OWLImmutableOntologyImpl for iteration)
* @return iterable of imports declaration
*/
@Nonnull
public Iterable getImportsDeclarations(boolean copy) {
if (!copy) {
return importsDeclarations.iterable();
}
return importsDeclarations.copy();
}
/**
* @param importDeclaration import declaration to remove
* @return true if added
*/
public boolean addImportsDeclaration(OWLImportsDeclaration importDeclaration) {
return importsDeclarations.add(importDeclaration);
}
/**
* @param importDeclaration import declaration to remove
* @return true if removed
*/
public boolean removeImportsDeclaration(OWLImportsDeclaration importDeclaration) {
return importsDeclarations.remove(importDeclaration);
}
/**
* @param copy true if a copy of the set should be returned, false for a non defensive copy (to
* be used only by OWLImmutableOntologyImpl for iteration)
* @return iterable of annotations
*/
@Nonnull
Collection getOntologyAnnotations(boolean copy) {
if (!copy) {
return ontologyAnnotations.iterable();
}
return ontologyAnnotations.copy();
}
/**
* @param ann annotation to add
* @return true if annotation added
*/
public boolean addOntologyAnnotation(OWLAnnotation ann) {
return ontologyAnnotations.add(ann);
}
/**
* @param ann annotation to remove
* @return true if annotation removed
*/
public boolean removeOntologyAnnotation(OWLAnnotation ann) {
return ontologyAnnotations.remove(ann);
}
/**
* @param p pointer
* @param key type
* @param value type
* @param k key
* @param v value
* @return true if the pair (key, value) is contained
*/
public static boolean contains(@Nonnull MapPointer p, K k, V v) {
return p.contains(k, v);
}
/**
* @return count of all axioms
*/
public int getAxiomCount() {
return axiomsByType.size();
}
/**
* Gets the axioms by type.
*
* @return the axioms by type
*/
@Nonnull
public List getAxioms() {
return axiomsByType.getAllValues();
}
/**
* @param axiom type
* @param axiomType axiom type to count
* @return axiom count
*/
public int getAxiomCount(AxiomType axiomType) {
if (!axiomsByType.isInitialized()) {
return 0;
}
return axiomsByType.getValues(axiomType).size();
}
/**
* @return logical axioms
*/
@Nonnull
public Set getLogicalAxioms() {
Set axioms = createLinkedSet();
for (AxiomType type : AXIOM_TYPES) {
if (type.isLogical()) {
for (OWLAxiom ax : (Collection) axiomsByType.getValues(type)) {
axioms.add((OWLLogicalAxiom) ax);
}
}
}
return axioms;
}
/**
* @return logical axioms count
*/
public int getLogicalAxiomCount() {
int count = 0;
for (AxiomType type : AXIOM_TYPES) {
if (type.isLogical()) {
count += axiomsByType.getValues(type).size();
}
}
return count;
}
/**
* @return copy of GCI axioms
*/
@Nonnull
public Set getGeneralClassAxioms() {
return generalClassAxioms.copy();
}
/**
* @param ax GCI axiom to add
* @return true if axiom added
*/
public boolean addGeneralClassAxioms(OWLClassAxiom ax) {
return generalClassAxioms.add(ax);
}
/**
* @param ax axiom to remove
* @return true if removed
*/
public boolean removeGeneralClassAxioms(OWLClassAxiom ax) {
return generalClassAxioms.remove(ax);
}
/**
* @param ax axiom to add
* @return true if added
*/
public boolean addPropertyChainSubPropertyAxioms(OWLSubPropertyChainOfAxiom ax) {
return propertyChainSubPropertyAxioms.add(ax);
}
/**
* @param ax axiom to remove
* @return true if removed
*/
public boolean removePropertyChainSubPropertyAxioms(OWLSubPropertyChainOfAxiom ax) {
return propertyChainSubPropertyAxioms.remove(ax);
}
/**
* @return map of axioms by type
*/
@Nonnull
public MapPointer, OWLAxiom> getAxiomsByType() {
return axiomsByType;
}
class AddAxiomVisitor extends OWLAxiomVisitorAdapter implements Serializable {
private static final long serialVersionUID = 40000L;
@Override
public void visit(@Nonnull OWLSubClassOfAxiom axiom) {
if (!axiom.getSubClass().isAnonymous()) {
OWLClass subClass = (OWLClass) axiom.getSubClass();
subClassAxiomsBySubPosition.put(subClass, axiom);
classAxiomsByClass.put(subClass, axiom);
} else {
addGeneralClassAxioms(axiom);
}
if (!axiom.getSuperClass().isAnonymous()) {
subClassAxiomsBySuperPosition.put((OWLClass) axiom.getSuperClass(), axiom);
}
}
@Override
public void visit(@Nonnull OWLNegativeObjectPropertyAssertionAxiom axiom) {
negativeObjectPropertyAssertionAxiomsByIndividual.put(axiom.getSubject(), axiom);
}
@Override
public void visit(@Nonnull OWLAsymmetricObjectPropertyAxiom axiom) {
asymmetricPropertyAxiomsByProperty.put(axiom.getProperty(), axiom);
}
@Override
public void visit(@Nonnull OWLReflexiveObjectPropertyAxiom axiom) {
reflexivePropertyAxiomsByProperty.put(axiom.getProperty(), axiom);
}
@Override
public void visit(@Nonnull OWLDisjointClassesAxiom axiom) {
boolean allAnon = true;
// Index against each named class in the axiom
for (OWLClassExpression desc : axiom.getClassExpressions()) {
if (!desc.isAnonymous()) {
OWLClass cls = (OWLClass) desc;
disjointClassesAxiomsByClass.put(cls, axiom);
classAxiomsByClass.put(cls, axiom);
allAnon = false;
}
}
if (allAnon) {
addGeneralClassAxioms(axiom);
}
}
@Override
public void visit(@Nonnull OWLDataPropertyDomainAxiom axiom) {
dataPropertyDomainAxiomsByProperty.put(axiom.getProperty(), axiom);
}
@Override
public void visit(@Nonnull OWLObjectPropertyDomainAxiom axiom) {
if (axiom.getProperty() instanceof OWLObjectProperty) {
objectPropertyDomainAxiomsByProperty.put(axiom.getProperty(), axiom);
}
}
@Override
public void visit(@Nonnull OWLEquivalentObjectPropertiesAxiom axiom) {
for (OWLObjectPropertyExpression prop : axiom.getProperties()) {
equivalentObjectPropertyAxiomsByProperty.put(prop, axiom);
}
}
@Override
public void visit(@Nonnull OWLInverseObjectPropertiesAxiom axiom) {
inversePropertyAxiomsByProperty.put(axiom.getFirstProperty(), axiom);
inversePropertyAxiomsByProperty.put(axiom.getSecondProperty(), axiom);
}
@Override
public void visit(@Nonnull OWLNegativeDataPropertyAssertionAxiom axiom) {
negativeDataPropertyAssertionAxiomsByIndividual.put(axiom.getSubject(), axiom);
}
@Override
public void visit(@Nonnull OWLDifferentIndividualsAxiom axiom) {
for (OWLIndividual ind : axiom.getIndividuals()) {
differentIndividualsAxiomsByIndividual.put(ind, axiom);
}
}
@Override
public void visit(@Nonnull OWLDisjointDataPropertiesAxiom axiom) {
for (OWLDataPropertyExpression prop : axiom.getProperties()) {
disjointDataPropertyAxiomsByProperty.put(prop, axiom);
}
}
@Override
public void visit(@Nonnull OWLDisjointObjectPropertiesAxiom axiom) {
for (OWLObjectPropertyExpression prop : axiom.getProperties()) {
disjointObjectPropertyAxiomsByProperty.put(prop, axiom);
}
}
@Override
public void visit(@Nonnull OWLObjectPropertyRangeAxiom axiom) {
objectPropertyRangeAxiomsByProperty.put(axiom.getProperty(), axiom);
}
@Override
public void visit(@Nonnull OWLObjectPropertyAssertionAxiom axiom) {
objectPropertyAssertionsByIndividual.put(axiom.getSubject(), axiom);
}
@Override
public void visit(@Nonnull OWLFunctionalObjectPropertyAxiom axiom) {
functionalObjectPropertyAxiomsByProperty.put(axiom.getProperty(), axiom);
}
@Override
public void visit(@Nonnull OWLSubObjectPropertyOfAxiom axiom) {
objectSubPropertyAxiomsBySubPosition.put(axiom.getSubProperty(), axiom);
objectSubPropertyAxiomsBySuperPosition.put(axiom.getSuperProperty(), axiom);
}
@Override
public void visit(@Nonnull OWLDisjointUnionAxiom axiom) {
disjointUnionAxiomsByClass.put(axiom.getOWLClass(), axiom);
classAxiomsByClass.put(axiom.getOWLClass(), axiom);
}
@Override
public void visit(@Nonnull OWLDeclarationAxiom axiom) {
declarationsByEntity.put(axiom.getEntity(), axiom);
}
@Override
public void visit(@Nonnull OWLAnnotationAssertionAxiom axiom) {
annotationAssertionAxiomsBySubject.put(axiom.getSubject(), axiom);
}
@Override
public void visit(@Nonnull OWLHasKeyAxiom axiom) {
if (!axiom.getClassExpression().isAnonymous()) {
hasKeyAxiomsByClass.put(axiom.getClassExpression().asOWLClass(), axiom);
}
}
@Override
public void visit(@Nonnull OWLSymmetricObjectPropertyAxiom axiom) {
symmetricPropertyAxiomsByProperty.put(axiom.getProperty(), axiom);
}
@Override
public void visit(@Nonnull OWLDataPropertyRangeAxiom axiom) {
dataPropertyRangeAxiomsByProperty.put(axiom.getProperty(), axiom);
}
@Override
public void visit(@Nonnull OWLFunctionalDataPropertyAxiom axiom) {
functionalDataPropertyAxiomsByProperty.put(axiom.getProperty(), axiom);
}
@Override
public void visit(@Nonnull OWLEquivalentDataPropertiesAxiom axiom) {
for (OWLDataPropertyExpression prop : axiom.getProperties()) {
equivalentDataPropertyAxiomsByProperty.put(prop, axiom);
}
}
@Override
public void visit(@Nonnull OWLClassAssertionAxiom axiom) {
classAssertionAxiomsByIndividual.put(axiom.getIndividual(), axiom);
if (!axiom.getClassExpression().isAnonymous()) {
classAssertionAxiomsByClass.put(axiom.getClassExpression(), axiom);
}
}
@Override
public void visit(@Nonnull OWLEquivalentClassesAxiom axiom) {
boolean allAnon = true;
for (OWLClassExpression desc : axiom.getClassExpressions()) {
if (!desc.isAnonymous()) {
equivalentClassesAxiomsByClass.put((OWLClass) desc, axiom);
classAxiomsByClass.put((OWLClass) desc, axiom);
allAnon = false;
}
}
if (allAnon) {
addGeneralClassAxioms(axiom);
}
}
@Override
public void visit(@Nonnull OWLDataPropertyAssertionAxiom axiom) {
dataPropertyAssertionsByIndividual.put(axiom.getSubject(), axiom);
}
@Override
public void visit(@Nonnull OWLTransitiveObjectPropertyAxiom axiom) {
transitivePropertyAxiomsByProperty.put(axiom.getProperty(), axiom);
}
@Override
public void visit(@Nonnull OWLIrreflexiveObjectPropertyAxiom axiom) {
irreflexivePropertyAxiomsByProperty.put(axiom.getProperty(), axiom);
}
@Override
public void visit(@Nonnull OWLSubDataPropertyOfAxiom axiom) {
dataSubPropertyAxiomsBySubPosition.put(axiom.getSubProperty(), axiom);
dataSubPropertyAxiomsBySuperPosition.put(axiom.getSuperProperty(), axiom);
}
@Override
public void visit(@Nonnull OWLInverseFunctionalObjectPropertyAxiom axiom) {
inverseFunctionalPropertyAxiomsByProperty.put(axiom.getProperty(), axiom);
}
@Override
public void visit(@Nonnull OWLSameIndividualAxiom axiom) {
for (OWLIndividual ind : axiom.getIndividuals()) {
sameIndividualsAxiomsByIndividual.put(ind, axiom);
}
}
@Override
public void visit(OWLSubPropertyChainOfAxiom axiom) {
addPropertyChainSubPropertyAxioms(axiom);
}
}
class RemoveAxiomVisitor extends OWLAxiomVisitorAdapter implements Serializable {
private static final long serialVersionUID = 40000L;
@Override
public void visit(@Nonnull OWLSubClassOfAxiom axiom) {
if (!axiom.getSubClass().isAnonymous()) {
OWLClass subClass = (OWLClass) axiom.getSubClass();
subClassAxiomsBySubPosition.remove(subClass, axiom);
classAxiomsByClass.remove(subClass, axiom);
} else {
removeGeneralClassAxioms(axiom);
}
if (!axiom.getSuperClass().isAnonymous()) {
subClassAxiomsBySuperPosition.remove(axiom.getSuperClass().asOWLClass(), axiom);
}
}
@Override
public void visit(@Nonnull OWLNegativeObjectPropertyAssertionAxiom axiom) {
negativeObjectPropertyAssertionAxiomsByIndividual.remove(axiom.getSubject(), axiom);
}
@Override
public void visit(@Nonnull OWLAsymmetricObjectPropertyAxiom axiom) {
asymmetricPropertyAxiomsByProperty.remove(axiom.getProperty(), axiom);
}
@Override
public void visit(@Nonnull OWLReflexiveObjectPropertyAxiom axiom) {
reflexivePropertyAxiomsByProperty.remove(axiom.getProperty(), axiom);
}
@Override
public void visit(@Nonnull OWLDisjointClassesAxiom axiom) {
boolean allAnon = true;
for (OWLClassExpression desc : axiom.getClassExpressions()) {
if (!desc.isAnonymous()) {
OWLClass cls = (OWLClass) desc;
disjointClassesAxiomsByClass.remove(cls, axiom);
classAxiomsByClass.remove(cls, axiom);
allAnon = false;
}
}
if (allAnon) {
removeGeneralClassAxioms(axiom);
}
}
@Override
public void visit(@Nonnull OWLDataPropertyDomainAxiom axiom) {
dataPropertyDomainAxiomsByProperty.remove(axiom.getProperty(), axiom);
}
@Override
public void visit(@Nonnull OWLObjectPropertyDomainAxiom axiom) {
if (axiom.getProperty() instanceof OWLObjectProperty) {
objectPropertyDomainAxiomsByProperty.remove(axiom.getProperty(), axiom);
}
}
@Override
public void visit(@Nonnull OWLEquivalentObjectPropertiesAxiom axiom) {
for (OWLObjectPropertyExpression prop : axiom.getProperties()) {
equivalentObjectPropertyAxiomsByProperty.remove(prop, axiom);
}
}
@Override
public void visit(@Nonnull OWLInverseObjectPropertiesAxiom axiom) {
inversePropertyAxiomsByProperty.remove(axiom.getFirstProperty(), axiom);
inversePropertyAxiomsByProperty.remove(axiom.getSecondProperty(), axiom);
}
@Override
public void visit(@Nonnull OWLNegativeDataPropertyAssertionAxiom axiom) {
negativeDataPropertyAssertionAxiomsByIndividual.remove(axiom.getSubject(), axiom);
}
@Override
public void visit(@Nonnull OWLDifferentIndividualsAxiom axiom) {
for (OWLIndividual ind : axiom.getIndividuals()) {
differentIndividualsAxiomsByIndividual.remove(ind, axiom);
}
}
@Override
public void visit(@Nonnull OWLDisjointDataPropertiesAxiom axiom) {
for (OWLDataPropertyExpression prop : axiom.getProperties()) {
disjointDataPropertyAxiomsByProperty.remove(prop, axiom);
}
}
@Override
public void visit(@Nonnull OWLDisjointObjectPropertiesAxiom axiom) {
for (OWLObjectPropertyExpression prop : axiom.getProperties()) {
disjointObjectPropertyAxiomsByProperty.remove(prop, axiom);
}
}
@Override
public void visit(@Nonnull OWLObjectPropertyRangeAxiom axiom) {
objectPropertyRangeAxiomsByProperty.remove(axiom.getProperty(), axiom);
}
@Override
public void visit(@Nonnull OWLObjectPropertyAssertionAxiom axiom) {
objectPropertyAssertionsByIndividual.remove(axiom.getSubject(), axiom);
}
@Override
public void visit(@Nonnull OWLFunctionalObjectPropertyAxiom axiom) {
functionalObjectPropertyAxiomsByProperty.remove(axiom.getProperty(), axiom);
}
@Override
public void visit(@Nonnull OWLSubObjectPropertyOfAxiom axiom) {
objectSubPropertyAxiomsBySubPosition.remove(axiom.getSubProperty(), axiom);
objectSubPropertyAxiomsBySuperPosition.remove(axiom.getSuperProperty(), axiom);
}
@Override
public void visit(@Nonnull OWLDisjointUnionAxiom axiom) {
disjointUnionAxiomsByClass.remove(axiom.getOWLClass(), axiom);
classAxiomsByClass.remove(axiom.getOWLClass(), axiom);
}
@Override
public void visit(@Nonnull OWLDeclarationAxiom axiom) {
declarationsByEntity.remove(axiom.getEntity(), axiom);
}
@Override
public void visit(@Nonnull OWLAnnotationAssertionAxiom axiom) {
annotationAssertionAxiomsBySubject.remove(axiom.getSubject(), axiom);
}
@Override
public void visit(@Nonnull OWLHasKeyAxiom axiom) {
if (!axiom.getClassExpression().isAnonymous()) {
hasKeyAxiomsByClass.remove(axiom.getClassExpression().asOWLClass(), axiom);
}
}
@Override
public void visit(@Nonnull OWLSymmetricObjectPropertyAxiom axiom) {
symmetricPropertyAxiomsByProperty.remove(axiom.getProperty(), axiom);
}
@Override
public void visit(@Nonnull OWLDataPropertyRangeAxiom axiom) {
dataPropertyRangeAxiomsByProperty.remove(axiom.getProperty(), axiom);
}
@Override
public void visit(@Nonnull OWLFunctionalDataPropertyAxiom axiom) {
functionalDataPropertyAxiomsByProperty.remove(axiom.getProperty(), axiom);
}
@Override
public void visit(@Nonnull OWLEquivalentDataPropertiesAxiom axiom) {
for (OWLDataPropertyExpression prop : axiom.getProperties()) {
equivalentDataPropertyAxiomsByProperty.remove(prop, axiom);
}
}
@Override
public void visit(@Nonnull OWLClassAssertionAxiom axiom) {
classAssertionAxiomsByIndividual.remove(axiom.getIndividual(), axiom);
if (!axiom.getClassExpression().isAnonymous()) {
classAssertionAxiomsByClass.remove(axiom.getClassExpression(), axiom);
}
}
@Override
public void visit(@Nonnull OWLEquivalentClassesAxiom axiom) {
boolean allAnon = true;
for (OWLClassExpression desc : axiom.getClassExpressions()) {
if (!desc.isAnonymous()) {
equivalentClassesAxiomsByClass.remove((OWLClass) desc, axiom);
classAxiomsByClass.remove((OWLClass) desc, axiom);
allAnon = false;
}
}
if (allAnon) {
removeGeneralClassAxioms(axiom);
}
}
@Override
public void visit(@Nonnull OWLDataPropertyAssertionAxiom axiom) {
dataPropertyAssertionsByIndividual.remove(axiom.getSubject(), axiom);
}
@Override
public void visit(@Nonnull OWLTransitiveObjectPropertyAxiom axiom) {
transitivePropertyAxiomsByProperty.remove(axiom.getProperty(), axiom);
}
@Override
public void visit(@Nonnull OWLIrreflexiveObjectPropertyAxiom axiom) {
irreflexivePropertyAxiomsByProperty.remove(axiom.getProperty(), axiom);
}
@Override
public void visit(@Nonnull OWLSubDataPropertyOfAxiom axiom) {
dataSubPropertyAxiomsBySubPosition.remove(axiom.getSubProperty(), axiom);
dataSubPropertyAxiomsBySuperPosition.remove(axiom.getSuperProperty(), axiom);
}
@Override
public void visit(@Nonnull OWLInverseFunctionalObjectPropertyAxiom axiom) {
inverseFunctionalPropertyAxiomsByProperty.remove(axiom.getProperty(), axiom);
}
@Override
public void visit(@Nonnull OWLSameIndividualAxiom axiom) {
for (OWLIndividual ind : axiom.getIndividuals()) {
sameIndividualsAxiomsByIndividual.remove(ind, axiom);
}
}
@Override
public void visit(OWLSubPropertyChainOfAxiom axiom) {
removePropertyChainSubPropertyAxioms(axiom);
}
}
@Nonnull
@Override
public String toString() {
StringBuilder b = new StringBuilder("Internals{(first 20 axioms) ");
for (OWLAxiom ax : Iterables.limit(axiomsByType.getAllValues(), 20)) {
b.append(ax).append('\n');
}
b.append('}');
return b.toString();
}
/**
* @param entity entity to check
* @return true if reference is contained
*/
public boolean containsReference(@Nonnull OWLEntity entity) {
return entity.accept(refChecker).booleanValue();
}
/**
* @param owlEntity entity to describe
* @return referencing axioms
*/
@Nonnull
public Iterable getReferencingAxioms(@Nonnull OWLEntity owlEntity) {
return owlEntity.accept(refAxiomsCollector);
}
private class ReferencedAxiomsCollector
implements OWLEntityVisitorEx>, Serializable {
private static final long serialVersionUID = 40000L;
ReferencedAxiomsCollector() {}
@Override
public Iterable visit(OWLClass cls) {
return owlClassReferences.getValues(cls);
}
@Override
public Iterable visit(OWLObjectProperty property) {
return owlObjectPropertyReferences.getValues(property);
}
@Override
public Iterable visit(OWLDataProperty property) {
return owlDataPropertyReferences.getValues(property);
}
@Override
public Iterable visit(OWLNamedIndividual individual) {
return owlIndividualReferences.getValues(individual);
}
@Override
public Iterable visit(OWLDatatype datatype) {
return owlDatatypeReferences.getValues(datatype);
}
@Override
public Iterable visit(OWLAnnotationProperty property) {
return owlAnnotationPropertyReferences.getValues(property);
}
}
}