com.clarkparsia.pellet.owlapiv3.AxiomConverter Maven / Gradle / Ivy
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// Copyright (c) 2006 - 2008, Clark & Parsia, LLC.
// This source code is available under the terms of the Affero General Public
// License v3.
//
// Please see LICENSE.txt for full license terms, including the availability of
// proprietary exceptions.
// Questions, comments, or requests for clarification: [email protected]
package com.clarkparsia.pellet.owlapiv3;
import java.util.ArrayList;
import java.util.HashSet;
import java.util.List;
import java.util.Set;
import java.util.logging.Logger;
import org.mindswap.pellet.KnowledgeBase;
import org.mindswap.pellet.exceptions.InternalReasonerException;
import org.mindswap.pellet.utils.ATermUtils;
import org.mindswap.pellet.utils.SetUtils;
import org.semanticweb.owlapi.model.IRI;
import org.semanticweb.owlapi.model.OWLAxiom;
import org.semanticweb.owlapi.model.OWLClassExpression;
import org.semanticweb.owlapi.model.OWLDataFactory;
import org.semanticweb.owlapi.model.OWLDataProperty;
import org.semanticweb.owlapi.model.OWLDataPropertyExpression;
import org.semanticweb.owlapi.model.OWLDataRange;
import org.semanticweb.owlapi.model.OWLDatatype;
import org.semanticweb.owlapi.model.OWLIndividual;
import org.semanticweb.owlapi.model.OWLLiteral;
import org.semanticweb.owlapi.model.OWLObject;
import org.semanticweb.owlapi.model.OWLObjectProperty;
import org.semanticweb.owlapi.model.OWLObjectPropertyExpression;
import org.semanticweb.owlapi.model.OWLPropertyRange;
import org.semanticweb.owlapi.model.SWRLAtom;
import org.semanticweb.owlapi.model.SWRLDArgument;
import org.semanticweb.owlapi.model.SWRLIArgument;
import aterm.ATermAppl;
import aterm.ATermList;
/**
*
* Title: AxiomConverter
*
*
* Description: Converts axioms expressed as ATerms to OWL-API structures.
*
*
* Copyright: Copyright (c) 2007
*
*
* Company: Clark & Parsia, LLC.
*
*
* @author Evren Sirin
*/
public class AxiomConverter {
public static Logger log = Logger.getLogger( AxiomConverter.class.getName() );
private ConceptConverter conceptConverter;
private OWLDataFactory factory;
private KnowledgeBase kb;
public AxiomConverter(PelletReasoner reasoner) {
this( reasoner.getKB(), reasoner.getManager().getOWLDataFactory() );
}
public AxiomConverter(KnowledgeBase kb, OWLDataFactory factory) {
if( kb == null ) {
throw new NullPointerException( "KnowledgeBase is null" );
}
if( factory == null ) {
throw new NullPointerException( "OWLDataFactory is null" );
}
this.kb = kb;
this.factory = factory;
conceptConverter = new ConceptConverter( kb, factory );
}
public OWLAxiom convert(ATermAppl term) {
OWLAxiom axiom = null;
if( term.getAFun().equals( ATermUtils.EQCLASSFUN ) ) {
OWLClassExpression c1 = (OWLClassExpression) conceptConverter.convert( (ATermAppl) term
.getArgument( 0 ) );
OWLClassExpression c2 = (OWLClassExpression) conceptConverter.convert( (ATermAppl) term
.getArgument( 1 ) );
Set descriptions = new HashSet();
descriptions.add( c1 );
descriptions.add( c2 );
if( c1 != null && c2 != null ) {
axiom = factory.getOWLEquivalentClassesAxiom( descriptions );
}
}
else if( term.getAFun().equals( ATermUtils.SUBFUN ) ) {
OWLClassExpression c1 = (OWLClassExpression) conceptConverter.convert( (ATermAppl) term
.getArgument( 0 ) );
OWLClassExpression c2 = (OWLClassExpression) conceptConverter.convert( (ATermAppl) term
.getArgument( 1 ) );
if( c1 != null && c2 != null ) {
axiom = factory.getOWLSubClassOfAxiom( c1, c2 );
}
}
else if( term.getAFun().equals( ATermUtils.DISJOINTSFUN ) ) {
Set descriptions = new HashSet();
ATermList concepts = (ATermList) term.getArgument( 0 );
for( ; !concepts.isEmpty(); concepts = concepts.getNext() ) {
ATermAppl concept = (ATermAppl) concepts.getFirst();
OWLClassExpression c = (OWLClassExpression) conceptConverter.convert( concept );
if( c == null ) {
break;
}
descriptions.add( c );
}
// if no error occurred list will be empty
if( concepts.isEmpty() ) {
axiom = factory.getOWLDisjointClassesAxiom( descriptions );
}
}
else if( term.getAFun().equals( ATermUtils.DISJOINTFUN ) ) {
OWLClassExpression c1 = (OWLClassExpression) conceptConverter.convert( (ATermAppl) term
.getArgument( 0 ) );
OWLClassExpression c2 = (OWLClassExpression) conceptConverter.convert( (ATermAppl) term
.getArgument( 1 ) );
Set descriptions = new HashSet();
descriptions.add( c1 );
descriptions.add( c2 );
if( c1 != null && c2 != null ) {
axiom = factory.getOWLDisjointClassesAxiom( descriptions );
}
}
else if( term.getAFun().equals( ATermUtils.DISJOINTPROPSFUN ) ) {
Set objProperties = new HashSet();
Set dataProperties = new HashSet();
ATermList props = (ATermList) term.getArgument( 0 );
for( ; !props.isEmpty(); props = props.getNext() ) {
OWLObject p = conceptConverter.convert( (ATermAppl) term.getArgument( 0 ) );
if( p == null ) {
break;
}
else if( p instanceof OWLObjectProperty ) {
if( !dataProperties.isEmpty() ) {
break;
}
else {
objProperties.add( (OWLObjectProperty) p );
}
}
else {
if( !objProperties.isEmpty() ) {
break;
}
else {
dataProperties.add( (OWLDataProperty) p );
}
}
}
// if no error occurred list will be empty
if( props.isEmpty() ) {
if( !objProperties.isEmpty() ) {
axiom = factory
.getOWLDisjointObjectPropertiesAxiom( objProperties );
}
else {
axiom = factory
.getOWLDisjointDataPropertiesAxiom( dataProperties );
}
}
}
else if( term.getAFun().equals( ATermUtils.DISJOINTPROPFUN ) ) {
OWLObject p1 = conceptConverter.convert( (ATermAppl) term.getArgument( 0 ) );
OWLObject p2 = conceptConverter.convert( (ATermAppl) term.getArgument( 1 ) );
if( p1 != null && p2 != null ) {
if( p1 instanceof OWLObjectProperty && p2 instanceof OWLObjectProperty ) {
axiom = factory.getOWLDisjointObjectPropertiesAxiom( SetUtils.create(
(OWLObjectProperty) p1, (OWLObjectProperty) p2 ) );
}
else if( p1 instanceof OWLDataProperty && p2 instanceof OWLDataProperty ) {
axiom = factory.getOWLDisjointDataPropertiesAxiom( SetUtils.create(
(OWLDataProperty) p1, (OWLDataProperty) p2 ) );
}
}
}
else if( term.getAFun().equals( ATermUtils.SUBPROPFUN ) ) {
if( term.getArgument( 0 ) instanceof ATermList ) {
List subs = new ArrayList();
for( ATermList list = (ATermList) term.getArgument( 0 ); !list.isEmpty(); list = list
.getNext() ) {
OWLObjectPropertyExpression p = (OWLObjectPropertyExpression) conceptConverter
.convert( (ATermAppl) list.getFirst() );
if( p == null ) {
subs = null;
break;
}
subs.add( p );
}
OWLObjectProperty sup = (OWLObjectProperty) conceptConverter
.convert( (ATermAppl) term.getArgument( 1 ) );
if( subs != null && sup != null ) {
axiom = factory.getOWLSubPropertyChainOfAxiom( subs, sup );
}
}
else {
OWLObject p1 = conceptConverter.convert( (ATermAppl) term.getArgument( 0 ) );
OWLObject p2 = conceptConverter.convert( (ATermAppl) term.getArgument( 1 ) );
if( p1 != null && p2 != null ) {
if( p1 instanceof OWLObjectPropertyExpression && p2 instanceof OWLObjectPropertyExpression ) {
axiom = factory.getOWLSubObjectPropertyOfAxiom( (OWLObjectPropertyExpression) p1,
(OWLObjectPropertyExpression) p2 );
}
else if( p1 instanceof OWLDataProperty && p2 instanceof OWLDataProperty ) {
axiom = factory.getOWLSubDataPropertyOfAxiom( (OWLDataProperty) p1,
(OWLDataProperty) p2 );
}
}
}
}
else if( term.getAFun().equals( ATermUtils.EQPROPFUN ) ) {
OWLObject p1 = conceptConverter.convert( (ATermAppl) term.getArgument( 0 ) );
OWLObject p2 = conceptConverter.convert( (ATermAppl) term.getArgument( 1 ) );
if( p1 != null && p2 != null ) {
if( p1 instanceof OWLObjectProperty && p2 instanceof OWLObjectProperty ) {
axiom = factory.getOWLEquivalentObjectPropertiesAxiom( SetUtils.create(
(OWLObjectProperty) p1, (OWLObjectProperty) p2 ) );
}
else if( p1 instanceof OWLDataProperty && p2 instanceof OWLDataProperty ) {
axiom = factory.getOWLEquivalentDataPropertiesAxiom( SetUtils.create(
(OWLDataProperty) p1, (OWLDataProperty) p2 ) );
}
}
}
else if( term.getAFun().equals( ATermUtils.DOMAINFUN ) ) {
OWLObject p = conceptConverter.convert( (ATermAppl) term.getArgument( 0 ) );
OWLClassExpression c = (OWLClassExpression) conceptConverter.convert( (ATermAppl) term
.getArgument( 1 ) );
if( c != null && p != null ) {
if( p instanceof OWLObjectProperty ) {
axiom = factory.getOWLObjectPropertyDomainAxiom(
(OWLObjectPropertyExpression) p, c );
}
else {
axiom = factory
.getOWLDataPropertyDomainAxiom( (OWLDataPropertyExpression) p, c );
}
}
}
else if( term.getAFun().equals( ATermUtils.RANGEFUN ) ) {
OWLPropertyRange e = (OWLPropertyRange) conceptConverter.convert( (ATermAppl) term
.getArgument( 1 ) );
if( e != null ) {
if( e instanceof OWLClassExpression ) {
OWLObjectProperty p = (OWLObjectProperty) conceptConverter
.convert( (ATermAppl) term.getArgument( 0 ) );
if( p != null ) {
axiom = factory.getOWLObjectPropertyRangeAxiom( p, (OWLClassExpression) e );
}
}
else {
OWLDataProperty p = (OWLDataProperty) conceptConverter
.convert( (ATermAppl) term.getArgument( 0 ) );
if( p != null ) {
axiom = factory.getOWLDataPropertyRangeAxiom( p, (OWLDataRange) e );
}
}
}
}
else if( term.getAFun().equals( ATermUtils.INVPROPFUN ) ) {
OWLObjectProperty p1 = (OWLObjectProperty) conceptConverter.convert( (ATermAppl) term
.getArgument( 0 ) );
OWLObjectProperty p2 = (OWLObjectProperty) conceptConverter.convert( (ATermAppl) term
.getArgument( 1 ) );
if( p1 != null && p2 != null ) {
axiom = factory.getOWLInverseObjectPropertiesAxiom( p1, p2 );
}
}
else if( term.getAFun().equals( ATermUtils.TRANSITIVEFUN ) ) {
OWLObjectProperty p = (OWLObjectProperty) conceptConverter.convert( (ATermAppl) term
.getArgument( 0 ) );
if( p != null ) {
axiom = factory.getOWLTransitiveObjectPropertyAxiom( p );
}
}
else if( term.getAFun().equals( ATermUtils.FUNCTIONALFUN ) ) {
OWLObject p = conceptConverter.convert( (ATermAppl) term.getArgument( 0 ) );
if( p != null ) {
if( p instanceof OWLObjectProperty ) {
axiom = factory
.getOWLFunctionalObjectPropertyAxiom( (OWLObjectPropertyExpression) p );
}
else if( p instanceof OWLDataProperty ) {
axiom = factory
.getOWLFunctionalDataPropertyAxiom( (OWLDataPropertyExpression) p );
}
}
}
else if( term.getAFun().equals( ATermUtils.INVFUNCTIONALFUN ) ) {
OWLObjectProperty p = (OWLObjectProperty) conceptConverter.convert( (ATermAppl) term
.getArgument( 0 ) );
if( p != null ) {
axiom = factory.getOWLInverseFunctionalObjectPropertyAxiom( p );
}
}
else if( term.getAFun().equals( ATermUtils.SYMMETRICFUN ) ) {
OWLObject p = conceptConverter.convert( (ATermAppl) term.getArgument( 0 ) );
if( p != null && p instanceof OWLObjectPropertyExpression ) {
axiom = factory
.getOWLSymmetricObjectPropertyAxiom( (OWLObjectPropertyExpression) p );
}
}
else if( term.getAFun().equals( ATermUtils.ASYMMETRICFUN ) ) {
OWLObject p = conceptConverter.convert( (ATermAppl) term.getArgument( 0 ) );
if( p != null && p instanceof OWLObjectPropertyExpression ) {
axiom = factory
.getOWLAsymmetricObjectPropertyAxiom( (OWLObjectPropertyExpression) p );
}
}
else if( term.getAFun().equals( ATermUtils.REFLEXIVEFUN ) ) {
OWLObject p = conceptConverter.convert( (ATermAppl) term.getArgument( 0 ) );
if( p != null && p instanceof OWLObjectPropertyExpression ) {
axiom = factory
.getOWLReflexiveObjectPropertyAxiom( (OWLObjectPropertyExpression) p );
}
}
else if( term.getAFun().equals( ATermUtils.IRREFLEXIVEFUN ) ) {
OWLObject p = conceptConverter.convert( (ATermAppl) term.getArgument( 0 ) );
if( p != null && p instanceof OWLObjectPropertyExpression ) {
axiom = factory
.getOWLIrreflexiveObjectPropertyAxiom( (OWLObjectPropertyExpression) p );
}
}
else if( term.getAFun().equals( ATermUtils.TYPEFUN ) ) {
OWLIndividual i = conceptConverter.convertIndividual((ATermAppl) term
.getArgument( 0 ) );
OWLClassExpression c = (OWLClassExpression) conceptConverter.convert( (ATermAppl) term
.getArgument( 1 ) );
if( i != null && c != null ) {
axiom = factory.getOWLClassAssertionAxiom( c, i );
}
}
else if( term.getAFun().equals( ATermUtils.PROPFUN ) ) {
OWLIndividual subj = conceptConverter.convertIndividual((ATermAppl) term
.getArgument( 1 ) );
if( subj == null ) {
axiom = null;
}
else if( ATermUtils.isLiteral( (ATermAppl) term.getArgument( 2 ) ) ) {
OWLDataProperty pred = (OWLDataProperty) conceptConverter.convert( (ATermAppl) term
.getArgument( 0 ) );
OWLLiteral obj = (OWLLiteral) conceptConverter.convert( (ATermAppl) term
.getArgument( 2 ) );
if( pred != null && obj != null ) {
axiom = factory.getOWLDataPropertyAssertionAxiom( pred, subj, obj );
}
}
else {
OWLObjectProperty pred = (OWLObjectProperty) conceptConverter
.convert( (ATermAppl) term.getArgument( 0 ) );
OWLIndividual obj = conceptConverter.convertIndividual((ATermAppl) term
.getArgument( 2 ) );
if( pred != null && obj != null ) {
axiom = factory.getOWLObjectPropertyAssertionAxiom( pred, subj, obj );
}
}
}
else if( term.getAFun().equals( ATermUtils.NOTFUN )
&& ((ATermAppl) term.getArgument( 0 )).getAFun().equals( ATermUtils.PROPFUN ) ) {
term = (ATermAppl) term.getArgument( 0 );
OWLIndividual subj = conceptConverter.convertIndividual((ATermAppl) term
.getArgument( 1 ) );
if( subj == null ) {
axiom = null;
}
else if( ATermUtils.isLiteral( (ATermAppl) term.getArgument( 2 ) ) ) {
OWLDataProperty pred = (OWLDataProperty) conceptConverter.convert( (ATermAppl) term
.getArgument( 0 ) );
OWLLiteral obj = (OWLLiteral) conceptConverter.convert( (ATermAppl) term
.getArgument( 2 ) );
if( pred != null && obj != null ) {
axiom = factory.getOWLNegativeDataPropertyAssertionAxiom( pred, subj, obj );
}
}
else {
OWLObjectProperty pred = (OWLObjectProperty) conceptConverter
.convert( (ATermAppl) term.getArgument( 0 ) );
OWLIndividual obj = conceptConverter.convertIndividual((ATermAppl) term
.getArgument( 2 ) );
if( pred != null && obj != null ) {
axiom = factory.getOWLNegativeObjectPropertyAssertionAxiom( pred, subj, obj );
}
}
}
else if( term.getAFun().equals( ATermUtils.SAMEASFUN ) ) {
OWLIndividual ind1 = conceptConverter.convertIndividual((ATermAppl) term
.getArgument( 0 ) );
OWLIndividual ind2 = conceptConverter.convertIndividual((ATermAppl) term
.getArgument( 1 ) );
Set inds = new HashSet();
inds.add( ind1 );
inds.add( ind2 );
if( ind1 != null && ind2 != null ) {
axiom = factory.getOWLSameIndividualAxiom( inds );
}
}
else if( term.getAFun().equals( ATermUtils.DIFFERENTFUN ) ) {
OWLIndividual ind1 = conceptConverter.convertIndividual((ATermAppl) term
.getArgument( 0 ) );
OWLIndividual ind2 = conceptConverter.convertIndividual((ATermAppl) term
.getArgument( 1 ) );
Set inds = new HashSet();
inds.add( ind1 );
inds.add( ind2 );
if( ind1 != null && ind2 != null ) {
axiom = factory.getOWLDifferentIndividualsAxiom( inds );
}
}
else if( term.getAFun().equals( ATermUtils.ALLDIFFERENTFUN ) ) {
Set individuals = new HashSet();
ATermList list = (ATermList) term.getArgument( 0 );
for( ; !list.isEmpty(); list = list.getNext() ) {
ATermAppl ind = (ATermAppl) list.getFirst();
OWLIndividual i = conceptConverter.convertIndividual(ind);
if( i == null ) {
break;
}
individuals.add( i );
}
// if no error occurred list will be empty
if( list.isEmpty() ) {
axiom = factory.getOWLDifferentIndividualsAxiom( individuals );
}
}
else if( term.getAFun().equals( ATermUtils.RULEFUN ) ) {
Set antecedent = new HashSet(); // Body
Set consequent = new HashSet(); // Head
ATermList head = (ATermList) term.getArgument( 1 );
ATermList body = (ATermList) term.getArgument( 2 );
for( ; !body.isEmpty(); body = body.getNext() ) {
antecedent.add( parseToSWRLAtom( (ATermAppl) body.getFirst() ) );
}
for( ; !head.isEmpty(); head = head.getNext() ) {
consequent.add( parseToSWRLAtom( (ATermAppl) head.getFirst() ) );
}
if( !antecedent.contains( null ) && !consequent.contains( null ) ) {
ATermAppl name = (ATermAppl) term.getArgument( 0 );
if( name == ATermUtils.EMPTY ) {
axiom = factory.getSWRLRule( antecedent, consequent );
}
else if( ATermUtils.isBnode( name ) ) {
axiom = factory.getSWRLRule(antecedent, consequent);
}
else {
axiom = factory.getSWRLRule(antecedent,
consequent );
}
}
}
else if( term.getAFun().equals( ATermUtils.DATATYPEDEFFUN ) ) {
OWLDatatype d1 = (OWLDatatype) conceptConverter.convert( (ATermAppl) term
.getArgument( 0 ) );
OWLDataRange d2 = (OWLDataRange) conceptConverter.convert( (ATermAppl) term
.getArgument( 1 ) );
if( d1 != null && d2 != null ) {
axiom = factory.getOWLDatatypeDefinitionAxiom( d1, d2 );
}
}
if( axiom == null ) {
log.warning( "Cannot convert to OWLAPI: " + term );
}
return axiom;
}
private SWRLAtom parseToSWRLAtom(ATermAppl term) {
SWRLAtom atom = null;
if( term.getAFun().equals( ATermUtils.TYPEFUN ) ) {
ATermAppl i = (ATermAppl) term.getArgument( 0 );
OWLObject type = conceptConverter.convert( (ATermAppl) term
.getArgument( 1 ) );
if( type instanceof OWLClassExpression ) {
SWRLIArgument io = parseToAtomIObject( i );
atom = factory.getSWRLClassAtom( (OWLClassExpression) type, io );
}
else if( type instanceof OWLDataRange ) {
SWRLDArgument io = parseToAtomDObject( i );
atom = factory.getSWRLDataRangeAtom( (OWLDataRange) type, io );
}
else {
throw new InternalReasonerException( "Cannot convert to SWRL atom: "
+ ATermUtils.toString( term ) );
}
}
else if( term.getAFun().equals( ATermUtils.PROPFUN ) ) {
ATermAppl p = (ATermAppl) term.getArgument( 0 );
ATermAppl i1 = (ATermAppl) term.getArgument( 1 );
ATermAppl i2 = (ATermAppl) term.getArgument( 2 );
SWRLIArgument io1 = parseToAtomIObject( i1 );
if( kb.isObjectProperty( p ) ) {
SWRLIArgument io2 = parseToAtomIObject( i2 );
OWLObjectProperty op = factory.getOWLObjectProperty( IRI.create( p.getName() ) );
atom = factory.getSWRLObjectPropertyAtom( op, io1, io2 );
}
else if( kb.isDatatypeProperty( p ) ) {
SWRLDArgument do2 = parseToAtomDObject( i2 );
OWLDataProperty dp = factory.getOWLDataProperty( IRI.create( p.getName() ) );
atom = factory.getSWRLDataPropertyAtom( dp, io1, do2 );
}
}
else if( term.getAFun().equals( ATermUtils.SAMEASFUN ) ) {
ATermAppl i1 = (ATermAppl) term.getArgument( 0 );
ATermAppl i2 = (ATermAppl) term.getArgument( 1 );
SWRLIArgument io1 = parseToAtomIObject( i1 );
SWRLIArgument io2 = parseToAtomIObject( i2 );
atom = factory.getSWRLSameIndividualAtom( io1, io2 );
}
else if( term.getAFun().equals( ATermUtils.DIFFERENTFUN ) ) {
ATermAppl i1 = (ATermAppl) term.getArgument( 0 );
ATermAppl i2 = (ATermAppl) term.getArgument( 1 );
SWRLIArgument io1 = parseToAtomIObject( i1 );
SWRLIArgument io2 = parseToAtomIObject( i2 );
atom = factory.getSWRLDifferentIndividualsAtom( io1, io2 );
}
else if( term.getAFun().equals( ATermUtils.BUILTINFUN ) ) {
ATermList args = (ATermList) term.getArgument( 0 );
ATermAppl builtin = (ATermAppl) args.getFirst();
List list = new ArrayList();
for( args = args.getNext(); !args.isEmpty(); args = args.getNext() ) {
ATermAppl arg = (ATermAppl) args.getFirst();
list.add( parseToAtomDObject( arg ) );
}
atom = factory.getSWRLBuiltInAtom( IRI.create( builtin.getName() ), list );
}
if( atom == null ) {
log.warning( "Cannot convert to SWRLAtom: " + term );
}
return atom;
}
private SWRLIArgument parseToAtomIObject(ATermAppl t) {
if( ATermUtils.isVar( t ) ) {
return factory.getSWRLVariable( IRI.create( ((ATermAppl) t.getArgument( 0 )).getName() ) );
}
if( kb.isIndividual( t ) ) {
return factory.getSWRLIndividualArgument(conceptConverter.convertIndividual(t));
}
throw new InternalReasonerException( "Unrecognized term: " + t );
}
private SWRLDArgument parseToAtomDObject(ATermAppl t) {
if( ATermUtils.isVar( t ) ) {
return factory.getSWRLVariable( IRI.create( ((ATermAppl) t.getArgument( 0 )).getName() ) );
}
else if( ATermUtils.isLiteral( t ) ) {
return factory.getSWRLLiteralArgument( (OWLLiteral) conceptConverter.convert( t ) );
}
throw new InternalReasonerException( "Unrecognized term: " + t );
}
}