All Downloads are FREE. Search and download functionalities are using the official Maven repository.

weka.core.xml.XMLSerialization Maven / Gradle / Ivy

Go to download

The Waikato Environment for Knowledge Analysis (WEKA), a machine learning workbench. This version represents the developer version, the "bleeding edge" of development, you could say. New functionality gets added to this version.

There is a newer version: 3.9.6
Show newest version
/*
 *   This program is free software: you can redistribute it and/or modify
 *   it under the terms of the GNU General Public License as published by
 *   the Free Software Foundation, either version 3 of the License, or
 *   (at your option) any later version.
 *
 *   This program is distributed in the hope that it will be useful,
 *   but WITHOUT ANY WARRANTY; without even the implied warranty of
 *   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *   GNU General Public License for more details.
 *
 *   You should have received a copy of the GNU General Public License
 *   along with this program.  If not, see .
 */

/*
 * XMLSerialization.java
 * Copyright (C) 2004-2012 University of Waikato, Hamilton, New Zealand
 *
 */

package weka.core.xml;

import java.beans.BeanInfo;
import java.beans.Introspector;
import java.beans.PropertyDescriptor;
import java.io.BufferedInputStream;
import java.io.BufferedOutputStream;
import java.io.File;
import java.io.FileInputStream;
import java.io.FileOutputStream;
import java.io.InputStream;
import java.io.ObjectInputStream;
import java.io.ObjectOutputStream;
import java.io.OutputStream;
import java.io.Reader;
import java.io.Writer;
import java.lang.reflect.Array;
import java.lang.reflect.Constructor;
import java.lang.reflect.Method;
import java.util.ArrayList;
import java.util.Enumeration;
import java.util.Hashtable;
import java.util.List;
import java.util.Vector;

import org.w3c.dom.Document;
import org.w3c.dom.Element;

import weka.core.RevisionHandler;
import weka.core.RevisionUtils;
import weka.core.Utils;
import weka.core.Version;
import weka.core.WekaPackageClassLoaderManager;

/**
 * With this class objects can be serialized to XML instead into a binary
 * format. It uses introspection (cf. beans) to retrieve the data from the given
 * object, i.e. it can only access beans-conform fields automatically.
 * 

* The generic approach of writing data as XML can be overriden by adding custom * methods for reading/writing in a derived class (cf. m_Properties, m_CustomMethods).
* Custom read and write methods must have the same signature (and also be * public!) as the readFromXML and * writeToXML methods. Methods that apply to the naming rule * read + property name are added automatically to the list of * methods by the method * XMLSerializationMethodHandler.addMethods(...). *

* Other properties that are not conform the bean set/get-methods have to be * processed manually in a derived class (cf. * readPostProcess(Object), writePostProcess(Object)). *

* For a complete XML serialization/deserialization have a look at the * KOML class. *

* If a stored class has a constructor that takes a String to initialize (e.g. * String or Double) then the content of the tag will used for the constructor, * e.g. from * *

 * <object name="name" class="String" primitive="no">Smith</object>
 * 
* * "Smith" will be used to instantiate a String object as constructor argument. *

* * @see KOML * @see #fromXML(Document) * @see #toXML(Object) * @see #m_Properties * @see #m_CustomMethods * @see #readPostProcess(Object) * @see #writePostProcess(Object) * @see #readFromXML(Element) * @see #writeToXML(Element, Object, String) * * @author FracPete (fracpete at waikato dot ac dot nz) * @version $Revision: 13476 $ */ public class XMLSerialization implements RevisionHandler { /** for debugging purposes only */ protected static boolean DEBUG = false; /** * the node that is currently processed, in case of writing the parent node * (something might go wrong writing the new child) and in case of reading the * actual node that is tried to process */ protected Element m_CurrentNode = null; /** the tag for an object */ public final static String TAG_OBJECT = "object"; /** the version attribute */ public final static String ATT_VERSION = XMLDocument.ATT_VERSION; /** the tag for the name */ public final static String ATT_NAME = XMLDocument.ATT_NAME; /** the tag for the class */ public final static String ATT_CLASS = "class"; /** the tag whether primitive or not (yes/no) */ public final static String ATT_PRIMITIVE = "primitive"; /** the tag whether array or not (yes/no) */ public final static String ATT_ARRAY = "array"; /** the tag whether null or not (yes/no) */ public final static String ATT_NULL = "null"; /** the value "yes" for the primitive and array attribute */ public final static String VAL_YES = XMLDocument.VAL_YES; /** the value "no" for the primitive and array attribute */ public final static String VAL_NO = XMLDocument.VAL_NO; /** the value of the name for the root node */ public final static String VAL_ROOT = "__root__"; /** the root node of the XML document */ public final static String ROOT_NODE = TAG_OBJECT; /** * default value for attribute ATT_PRIMITIVE * * @see #ATT_PRIMITIVE */ public final static String ATT_PRIMITIVE_DEFAULT = VAL_NO; /** * default value for attribute ATT_ARRAY * * @see #ATT_ARRAY */ public final static String ATT_ARRAY_DEFAULT = VAL_NO; /** * default value for attribute ATT_NULL * * @see #ATT_NULL */ public final static String ATT_NULL_DEFAULT = VAL_NO; /** the DOCTYPE for the serialization */ public final static String DOCTYPE = "\n" + " \n" + " \n" + " \n" + " \n" + " \n" + " \n" + "]\n" + ">"; /** * List of fully qualified property names to suppress any warning messages for */ public final static List SUPPRESS_PROPERTY_WARNINGS = new ArrayList(); /** the XMLDocument that performs the transformation to and fro XML */ protected XMLDocument m_Document = null; /** for handling properties (ignored/allowed) */ protected PropertyHandler m_Properties = null; /** for handling custom read/write methods */ protected XMLSerializationMethodHandler m_CustomMethods = null; /** * for overriding class names (Class <-> Classname (String)) * * @see #overrideClassname(Object) */ protected Hashtable, String> m_ClassnameOverride = null; /** true to suppress warnings about loading newer/older versions etc. */ protected boolean m_suppressWarnings; /** * initializes the serialization * * @throws Exception if initialization fails */ public XMLSerialization() throws Exception { super(); clear(); } /** * Set whether to suppress warning messages or not * * @param suppress true to suppress warnings */ public void setSuppressWarnings(boolean suppress) { m_suppressWarnings = suppress; } /** * used for debugging purposes, i.e. only if DEBUG is set to true. needs a * newly generated Throwable instance to get the method/line from * * @param t a throwable instance, generated in the calling method * @param msg a message to pring * @see #DEBUG */ protected void trace(Throwable t, String msg) { if ((DEBUG) && (t.getStackTrace().length > 0)) { System.out.println("trace: " + t.getStackTrace()[0] + ": " + msg); } } /** * generates internally a new XML document and clears also the IgnoreList and * the mappings for the Read/Write-Methods * * @throws Exception if something goes wrong */ public void clear() throws Exception { m_Document = new XMLDocument(); m_Document.setValidating(true); m_Document.newDocument(DOCTYPE, ROOT_NODE); m_Properties = new PropertyHandler(); m_CustomMethods = new XMLSerializationMethodHandler(this); m_ClassnameOverride = new Hashtable, String>(); // java.io.File is sometimes represented as another class: // - Win32: sun.awt.shell.Win32ShellFolder2 // - Linux: sun.awt.shell.DefaultShellFolder // -> we set it to "java.io.File" m_ClassnameOverride.put(java.io.File.class, java.io.File.class.getName()); setVersion(Version.VERSION); m_CurrentNode = null; } /** * sets the given version string in the XML document * * @param version the new version string */ private void setVersion(String version) { Document doc; doc = m_Document.getDocument(); doc.getDocumentElement().setAttribute(ATT_VERSION, version); } /** * returns the WEKA version with which the serialized object was created * * @return the current version * @see Version */ public String getVersion() { Document doc; String result; doc = m_Document.getDocument(); result = doc.getDocumentElement().getAttribute(ATT_VERSION); return result; } /** * Checks the version in the current Document with the one of the current * release. If the version differ, a warning is printed. */ private void checkVersion() { if (m_suppressWarnings) { return; } String versionStr; Version version; version = new Version(); versionStr = getVersion(); if (versionStr.equals("")) { System.out.println("WARNING: has no version!"); } else if (version.isOlder(versionStr)) { System.out.println("WARNING: loading a newer version (" + versionStr + " > " + Version.VERSION + ")!"); } else if (version.isNewer(versionStr)) { System.out.println("NOTE: loading an older version (" + versionStr + " < " + Version.VERSION + ")!"); } } /** * returns a hashtable with PropertyDescriptors that have "get" and "set" * methods indexed by the property name. * * @see java.beans.PropertyDescriptor * @param o the object to retrieve the descriptors from * @return the PropertyDescriptors indexed by name of the property * @throws Exception if the introspection fails */ protected Hashtable getDescriptors(Object o) throws Exception { BeanInfo info; PropertyDescriptor[] desc; int i; Hashtable result; result = new Hashtable(); info = Introspector.getBeanInfo(o.getClass()); desc = info.getPropertyDescriptors(); for (i = 0; i < desc.length; i++) { // get AND set method? if ((desc[i].getReadMethod() != null) && (desc[i].getWriteMethod() != null)) { // in ignore list, i.e. a general ignore without complete path? if (m_Properties.isIgnored(desc[i].getDisplayName())) { continue; } // in ignore list of the class? if (m_Properties.isIgnored(o, desc[i].getDisplayName())) { continue; } // not an allowed property if (!m_Properties.isAllowed(o, desc[i].getDisplayName())) { continue; } result.put(desc[i].getDisplayName(), desc[i]); } } return result; } /** * returns the path of the "name" attribute from the root down to this node * (including it). * * @param node the node to get the path for * @return the complete "name" path of this node */ protected String getPath(Element node) { String result; result = node.getAttribute(ATT_NAME); while (node.getParentNode() != node.getOwnerDocument()) { node = (Element) node.getParentNode(); result = node.getAttribute(ATT_NAME) + "." + result; } return result; } /** * returns either VAL_YES or VAL_NO depending on the * value of b * * @param b the boolean to turn into a string * @return the value in string representation */ protected String booleanToString(boolean b) { if (b) { return VAL_YES; } else { return VAL_NO; } } /** * turns the given string into a boolean, if a positive number is given, then * zero is considered FALSE, every other number TRUE; the empty string is also * considered being FALSE * * @param s the string to turn into a boolean * @return the string as boolean */ protected boolean stringToBoolean(String s) { if (s.equals("")) { return false; } else if (s.equals(VAL_YES)) { return true; } else if (s.equalsIgnoreCase("true")) { return true; } else if (s.replaceAll("[0-9]*", "").equals("")) { return (Integer.parseInt(s) != 0); } else { return false; } } /** * appends a new node to the parent with the given parameters (a non-array) * * @param parent the parent of this node. if it is null the * document root element is used * @param name the name of the node * @param classname the classname for this node * @param primitive whether it is a primitve data type or not (i.e. an object) * @return the generated node */ protected Element addElement(Element parent, String name, String classname, boolean primitive) { return addElement(parent, name, classname, primitive, 0); } /** * appends a new node to the parent with the given parameters * * @param parent the parent of this node. if it is null the * document root element is used * @param name the name of the node * @param classname the classname for this node * @param primitive whether it is a primitve data type or not (i.e. an object) * @param array the dimensions of the array (0 if not an array) * @return the generated node */ protected Element addElement(Element parent, String name, String classname, boolean primitive, int array) { return addElement(parent, name, classname, primitive, array, false); } /** * appends a new node to the parent with the given parameters * * @param parent the parent of this node. if it is null the * document root element is used * @param name the name of the node * @param classname the classname for this node * @param primitive whether it is a primitve data type or not (i.e. an object) * @param array the dimensions of the array (0 if not an array) * @param isnull whether it is null * @return the generated node */ protected Element addElement(Element parent, String name, String classname, boolean primitive, int array, boolean isnull) { Element result; if (parent == null) { result = m_Document.getDocument().getDocumentElement(); } else { result = (Element) parent.appendChild(m_Document.getDocument() .createElement(TAG_OBJECT)); } // attributes // mandatory attributes: result.setAttribute(ATT_NAME, name); result.setAttribute(ATT_CLASS, classname); // add following attributes only if necessary, i.e., different from default: if (!booleanToString(primitive).equals(ATT_PRIMITIVE_DEFAULT)) { result.setAttribute(ATT_PRIMITIVE, booleanToString(primitive)); } // multi-dimensional array? if (array > 1) { result.setAttribute(ATT_ARRAY, Integer.toString(array)); } // backwards compatible: 0 -> no array ("no"), 1 -> 1-dim. array ("yes") else { if (!booleanToString(array == 1).equals(ATT_ARRAY_DEFAULT)) { result.setAttribute(ATT_ARRAY, booleanToString(array == 1)); } } if (!booleanToString(isnull).equals(ATT_NULL_DEFAULT)) { result.setAttribute(ATT_NULL, booleanToString(isnull)); } return result; } /** * if the class of the given object (or one of its ancestors) is stored in the * classname override hashtable, then the override name is returned otherwise * the classname of the given object. * * @param o the object to check for overriding its classname * @return if overridden then the classname stored in the hashtable, otherwise * the classname of the given object * @see #m_ClassnameOverride */ protected String overrideClassname(Object o) { Enumeration> enm; String result; Class currentCls; result = o.getClass().getName(); // check overrides enm = m_ClassnameOverride.keys(); while (enm.hasMoreElements()) { currentCls = enm.nextElement(); if (currentCls.isInstance(o)) { result = m_ClassnameOverride.get(currentCls); break; } } return result; } /** * if the given classname is stored in the classname override hashtable, then * the override name is returned otherwise the given classname. Note: * in contrast to overrideClassname(Object) does this method only * look for exact name matches. The other method checks whether the class of * the given object is a subclass of any of the stored overrides. * * @param classname the classname to check for overriding * @return if overridden then the classname stored in the hashtable, otherwise * the given classname * @see #m_ClassnameOverride * @see #overrideClassname(Object) */ protected String overrideClassname(String classname) { Enumeration> enm; String result; Class currentCls; result = classname; // check overrides enm = m_ClassnameOverride.keys(); while (enm.hasMoreElements()) { currentCls = enm.nextElement(); if (currentCls.getName().equals(classname)) { result = m_ClassnameOverride.get(currentCls); break; } } return result; } /** * returns a property descriptor if possible, otherwise null * * @param className the name of the class to get the descriptor for * @param displayName the name of the property * @return the descriptor if available, otherwise null */ protected PropertyDescriptor determineDescriptor(String className, String displayName) { PropertyDescriptor result; result = null; try { // result = new PropertyDescriptor(displayName, Class.forName(className)); result = new PropertyDescriptor(displayName, WekaPackageClassLoaderManager.forName(className)); } catch (Exception e) { result = null; } return result; } /** * adds the given primitive to the DOM structure. * * @param parent the parent of this object, e.g. the class this object is a * member of * @param o the primitive to describe in XML * @param name the name of the primitive * @return the node that was created * @throws Exception if the DOM creation fails */ protected Element writeBooleanToXML(Element parent, boolean o, String name) throws Exception { Element node; // for debugging only if (DEBUG) { trace(new Throwable(), name); } m_CurrentNode = parent; node = addElement(parent, name, Boolean.TYPE.getName(), true); node.appendChild(node.getOwnerDocument().createTextNode( new Boolean(o).toString())); return node; } /** * adds the given primitive to the DOM structure. * * @param parent the parent of this object, e.g. the class this object is a * member of * @param o the primitive to describe in XML * @param name the name of the primitive * @return the node that was created * @throws Exception if the DOM creation fails */ protected Element writeByteToXML(Element parent, byte o, String name) throws Exception { Element node; // for debugging only if (DEBUG) { trace(new Throwable(), name); } m_CurrentNode = parent; node = addElement(parent, name, Byte.TYPE.getName(), true); node.appendChild(node.getOwnerDocument().createTextNode( new Byte(o).toString())); return node; } /** * adds the given primitive to the DOM structure. * * @param parent the parent of this object, e.g. the class this object is a * member of * @param o the primitive to describe in XML * @param name the name of the primitive * @return the node that was created * @throws Exception if the DOM creation fails */ protected Element writeCharToXML(Element parent, char o, String name) throws Exception { Element node; // for debugging only if (DEBUG) { trace(new Throwable(), name); } m_CurrentNode = parent; node = addElement(parent, name, Character.TYPE.getName(), true); node.appendChild(node.getOwnerDocument().createTextNode( new Character(o).toString())); return node; } /** * adds the given primitive to the DOM structure. * * @param parent the parent of this object, e.g. the class this object is a * member of * @param o the primitive to describe in XML * @param name the name of the primitive * @return the node that was created * @throws Exception if the DOM creation fails */ protected Element writeDoubleToXML(Element parent, double o, String name) throws Exception { Element node; // for debugging only if (DEBUG) { trace(new Throwable(), name); } m_CurrentNode = parent; node = addElement(parent, name, Double.TYPE.getName(), true); node.appendChild(node.getOwnerDocument().createTextNode( new Double(o).toString())); return node; } /** * adds the given primitive to the DOM structure. * * @param parent the parent of this object, e.g. the class this object is a * member of * @param o the primitive to describe in XML * @param name the name of the primitive * @return the node that was created * @throws Exception if the DOM creation fails */ protected Element writeFloatToXML(Element parent, float o, String name) throws Exception { Element node; // for debugging only if (DEBUG) { trace(new Throwable(), name); } m_CurrentNode = parent; node = addElement(parent, name, Float.TYPE.getName(), true); node.appendChild(node.getOwnerDocument().createTextNode( new Float(o).toString())); return node; } /** * adds the given primitive to the DOM structure. * * @param parent the parent of this object, e.g. the class this object is a * member of * @param o the primitive to describe in XML * @param name the name of the primitive * @return the node that was created * @throws Exception if the DOM creation fails */ protected Element writeIntToXML(Element parent, int o, String name) throws Exception { Element node; // for debugging only if (DEBUG) { trace(new Throwable(), name); } m_CurrentNode = parent; node = addElement(parent, name, Integer.TYPE.getName(), true); node.appendChild(node.getOwnerDocument().createTextNode( new Integer(o).toString())); return node; } /** * adds the given primitive to the DOM structure. * * @param parent the parent of this object, e.g. the class this object is a * member of * @param o the primitive to describe in XML * @param name the name of the primitive * @return the node that was created * @throws Exception if the DOM creation fails */ protected Element writeLongToXML(Element parent, long o, String name) throws Exception { Element node; // for debugging only if (DEBUG) { trace(new Throwable(), name); } m_CurrentNode = parent; node = addElement(parent, name, Long.TYPE.getName(), true); node.appendChild(node.getOwnerDocument().createTextNode( new Long(o).toString())); return node; } /** * adds the given primitive to the DOM structure. * * @param parent the parent of this object, e.g. the class this object is a * member of * @param o the primitive to describe in XML * @param name the name of the primitive * @return the node that was created * @throws Exception if the DOM creation fails */ protected Element writeShortToXML(Element parent, short o, String name) throws Exception { Element node; // for debugging only if (DEBUG) { trace(new Throwable(), name); } m_CurrentNode = parent; node = addElement(parent, name, Short.TYPE.getName(), true); node.appendChild(node.getOwnerDocument().createTextNode( new Short(o).toString())); return node; } /** * checks whether the innermost class is a primitive class (handles * multi-dimensional arrays) * * @param c the array class to inspect * @return whether the array consists of primitive elements */ protected boolean isPrimitiveArray(Class c) { if (c.getComponentType().isArray()) { return isPrimitiveArray(c.getComponentType()); } else { return c.getComponentType().isPrimitive(); } } /** * adds the given Object to a DOM structure. (only public due to reflection).
* Note: overrideClassname(Object) is not invoked in case * of arrays, since the array class could be a superclass, whereas the * elements of the array can be specialized subclasses. In case of an array * the method overrideClassname(String) is invoked, which * searches for an exact match of the classname in the override hashtable. * * @param parent the parent of this object, e.g. the class this object is a * member of * @param o the Object to describe in XML * @param name the name of the object * @return the node that was created * @throws Exception if the DOM creation fails * @see #overrideClassname(Object) * @see #overrideClassname(String) * @see #m_ClassnameOverride */ public Element writeToXML(Element parent, Object o, String name) throws Exception { String classname; Element node; Hashtable memberlist; Enumeration enm; Object member; String memberName; Method method; PropertyDescriptor desc; boolean primitive; int array; int i; Object obj; String tmpStr; node = null; // for debugging only if (DEBUG) { trace(new Throwable(), name); } // special handling of null-objects if (o == null) { node = addElement(parent, name, "" + null, false, 0, true); return node; } // used for overriding the classname obj = null; // get information about object array = 0; if (o.getClass().isArray()) { array = Utils.getArrayDimensions(o); } if (array > 0) { classname = Utils.getArrayClass(o.getClass()).getName(); primitive = isPrimitiveArray(o.getClass()); } else { // try to get property descriptor to determine real class // (for primitives the getClass() method returns the corresponding // Object-Class!) desc = null; if (parent != null) { desc = determineDescriptor(parent.getAttribute(ATT_CLASS), name); } if (desc != null) { primitive = desc.getPropertyType().isPrimitive(); } else { primitive = o.getClass().isPrimitive(); } // for primitives: retrieve primitive type, otherwise the object's real // class. For non-primitives we can't use the descriptor, since that // might only return an interface as class! if (primitive) { classname = desc.getPropertyType().getName(); } else { obj = o; classname = o.getClass().getName(); } } // fix class/primitive if parent is array of primitives, thanks to // reflection the elements of the array are objects and not primitives! if ((parent != null) && (!parent.getAttribute(ATT_ARRAY).equals("")) && (!parent.getAttribute(ATT_ARRAY).equals(VAL_NO)) && (stringToBoolean(parent.getAttribute(ATT_PRIMITIVE)))) { primitive = true; classname = parent.getAttribute(ATT_CLASS); obj = null; } // perhaps we need to override the classname if (obj != null) { classname = overrideClassname(obj); // for non-arrays } else { classname = overrideClassname(classname); // for arrays } // create node for current object node = addElement(parent, name, classname, primitive, array); // array? -> save as child with 'name=""' if (array > 0) { for (i = 0; i < Array.getLength(o); i++) { invokeWriteToXML(node, Array.get(o, i), Integer.toString(i)); } } // non-array else { // primitive? -> only toString() if (primitive) { node.appendChild(node.getOwnerDocument().createTextNode(o.toString())); } // object else { // process recursively members of this object memberlist = getDescriptors(o); // if no get/set methods -> we assume it has String-Constructor if (memberlist.size() == 0) { if (!o.toString().equals("")) { tmpStr = o.toString(); // these five entities are recognized by every XML processor // see http://www.xml.com/pub/a/2001/03/14/trxml10.html tmpStr = tmpStr.replaceAll("&", "&").replaceAll("\"", """) .replaceAll("'", "'").replaceAll("<", "<") .replaceAll(">", ">"); // in addition, replace some other entities as well tmpStr = tmpStr.replaceAll("\n", " ").replaceAll("\r", " ") .replaceAll("\t", " "); if (o instanceof java.io.File) { // hack to force separators to be always saved as / tmpStr = tmpStr.replace('\\', '/'); } node.appendChild(node.getOwnerDocument().createTextNode(tmpStr)); } } else { enm = memberlist.keys(); while (enm.hasMoreElements()) { memberName = enm.nextElement().toString(); // in ignore list? if ((m_Properties.isIgnored(memberName)) || (m_Properties.isIgnored(getPath(node) + "." + memberName)) || (m_Properties.isIgnored(o, getPath(node) + "." + memberName))) { continue; } // is it allowed? if (!m_Properties.isAllowed(o, memberName)) { continue; } desc = memberlist.get(memberName); method = desc.getReadMethod(); member = method.invoke(o, (Object[]) null); invokeWriteToXML(node, member, memberName); } } } } return node; } /** * either invokes a custom method to write a specific property/class or the * standard method writeToXML(Element,Object,String) * * @param parent the parent XML node * @param o the object's content will be added as children to the given parent * node * @param name the name of the object * @return the node that was created * @throws Exception if invocation or turning into XML fails */ protected Element invokeWriteToXML(Element parent, Object o, String name) throws Exception { Method method; Class[] methodClasses; Object[] methodArgs; boolean array; Element node; boolean useDefault; node = null; method = null; useDefault = false; m_CurrentNode = parent; // default, if null if (o == null) { useDefault = true; } try { if (!useDefault) { array = o.getClass().isArray(); // display name? if (m_CustomMethods.write().contains(name)) { method = m_CustomMethods.write().get(o.getClass()); } else // class? if ((!array) && (m_CustomMethods.write().contains(o.getClass()))) { method = m_CustomMethods.write().get(o.getClass()); } else { method = null; } useDefault = (method == null); } // custom if (!useDefault) { methodClasses = new Class[3]; methodClasses[0] = Element.class; methodClasses[1] = Object.class; methodClasses[2] = String.class; methodArgs = new Object[3]; methodArgs[0] = parent; methodArgs[1] = o; methodArgs[2] = name; node = (Element) method.invoke(this, methodArgs); } // standard else { node = writeToXML(parent, o, name); } } catch (Exception e) { if (DEBUG) { e.printStackTrace(); } if (m_CurrentNode != null) { System.out.println("Happened near: " + getPath(m_CurrentNode)); // print it only once! m_CurrentNode = null; } System.out.println("PROBLEM (write): " + name); throw (Exception) e.fillInStackTrace(); } return node; } /** * enables derived classes to due some pre-processing on the objects, that's * about to be serialized. Right now it only returns the object. * * @param o the object that is serialized into XML * @return the possibly altered object * @throws Exception if post-processing fails */ protected Object writePreProcess(Object o) throws Exception { return o; } /** * enables derived classes to add other properties to the DOM tree, e.g. ones * that do not apply to the get/set convention of beans. only implemented with * empty method body. * * @param o the object that is serialized into XML * @throws Exception if post-processing fails */ protected void writePostProcess(Object o) throws Exception { } /** * extracts all accesible properties from the given object * * @param o the object to turn into an XML representation * @return the generated DOM document * @throws Exception if XML generation fails */ public XMLDocument toXML(Object o) throws Exception { clear(); invokeWriteToXML(null, writePreProcess(o), VAL_ROOT); writePostProcess(o); return m_Document; } /** * returns a descriptor for a given objet by providing the name * * @param o the object the get the descriptor for * @param name the display name of the descriptor * @return the Descriptor, if found, otherwise null * @throws Exception if introsepction fails */ protected PropertyDescriptor getDescriptorByName(Object o, String name) throws Exception { PropertyDescriptor result; PropertyDescriptor[] desc; int i; result = null; desc = Introspector.getBeanInfo(o.getClass()).getPropertyDescriptors(); for (i = 0; i < desc.length; i++) { if (desc[i].getDisplayName().equals(name)) { result = desc[i]; break; } } return result; } /** * returns the associated class for the given name * * @param name the name of the class to return a Class object for * @return the class if it could be retrieved * @throws Exception if it class retrieval fails */ protected Class determineClass(String name) throws Exception { Class result; if (name.equals(Boolean.TYPE.getName())) { result = Boolean.TYPE; } else if (name.equals(Byte.TYPE.getName())) { result = Byte.TYPE; } else if (name.equals(Character.TYPE.getName())) { result = Character.TYPE; } else if (name.equals(Double.TYPE.getName())) { result = Double.TYPE; } else if (name.equals(Float.TYPE.getName())) { result = Float.TYPE; } else if (name.equals(Integer.TYPE.getName())) { result = Integer.TYPE; } else if (name.equals(Long.TYPE.getName())) { result = Long.TYPE; } else if (name.equals(Short.TYPE.getName())) { result = Short.TYPE; } else { // result = Class.forName(name); result = WekaPackageClassLoaderManager.forName(name); } return result; } /** * returns an Object representing the primitive described by the given node. * Here we use a trick to return an object even though its a primitive: by * creating a primitive array with reflection of length 1, setting the * primtive value as real object and then returning the "object" at position 1 * of the array. * * @param node the node to return the value as "primitive" object * @return the primitive as "pseudo" object * @throws Exception if the instantiation of the array fails or any of the * String conversions fails */ protected Object getPrimitive(Element node) throws Exception { Object result; Object tmpResult; Class cls; cls = determineClass(node.getAttribute(ATT_CLASS)); tmpResult = Array.newInstance(cls, 1); if (cls == Boolean.TYPE) { Array.set(tmpResult, 0, new Boolean(XMLDocument.getContent(node))); } else if (cls == Byte.TYPE) { Array.set(tmpResult, 0, new Byte(XMLDocument.getContent(node))); } else if (cls == Character.TYPE) { Array.set(tmpResult, 0, new Character(XMLDocument.getContent(node) .charAt(0))); } else if (cls == Double.TYPE) { Array.set(tmpResult, 0, new Double(XMLDocument.getContent(node))); } else if (cls == Float.TYPE) { Array.set(tmpResult, 0, new Float(XMLDocument.getContent(node))); } else if (cls == Integer.TYPE) { Array.set(tmpResult, 0, new Integer(XMLDocument.getContent(node))); } else if (cls == Long.TYPE) { Array.set(tmpResult, 0, new Long(XMLDocument.getContent(node))); } else if (cls == Short.TYPE) { Array.set(tmpResult, 0, new Short(XMLDocument.getContent(node))); } else { throw new Exception("Cannot get primitive for class '" + cls.getName() + "'!"); } result = Array.get(tmpResult, 0); return result; } /** * builds the primitive from the given DOM node. * * @param node the associated XML node * @return the primitive created from the XML description * @throws Exception if instantiation fails */ public boolean readBooleanFromXML(Element node) throws Exception { // for debugging only if (DEBUG) { trace(new Throwable(), node.getAttribute(ATT_NAME)); } m_CurrentNode = node; return ((Boolean) getPrimitive(node)).booleanValue(); } /** * builds the primitive from the given DOM node. * * @param node the associated XML node * @return the primitive created from the XML description * @throws Exception if instantiation fails */ public byte readByteFromXML(Element node) throws Exception { // for debugging only if (DEBUG) { trace(new Throwable(), node.getAttribute(ATT_NAME)); } m_CurrentNode = node; return ((Byte) getPrimitive(node)).byteValue(); } /** * builds the primitive from the given DOM node. * * @param node the associated XML node * @return the primitive created from the XML description * @throws Exception if instantiation fails */ public char readCharFromXML(Element node) throws Exception { // for debugging only if (DEBUG) { trace(new Throwable(), node.getAttribute(ATT_NAME)); } m_CurrentNode = node; return ((Character) getPrimitive(node)).charValue(); } /** * builds the primitive from the given DOM node. * * @param node the associated XML node * @return the primitive created from the XML description * @throws Exception if instantiation fails */ public double readDoubleFromXML(Element node) throws Exception { // for debugging only if (DEBUG) { trace(new Throwable(), node.getAttribute(ATT_NAME)); } m_CurrentNode = node; return ((Double) getPrimitive(node)).doubleValue(); } /** * builds the primitive from the given DOM node. * * @param node the associated XML node * @return the primitive created from the XML description * @throws Exception if instantiation fails */ public float readFloatFromXML(Element node) throws Exception { // for debugging only if (DEBUG) { trace(new Throwable(), node.getAttribute(ATT_NAME)); } m_CurrentNode = node; return ((Float) getPrimitive(node)).floatValue(); } /** * builds the primitive from the given DOM node. * * @param node the associated XML node * @return the primitive created from the XML description * @throws Exception if instantiation fails */ public int readIntFromXML(Element node) throws Exception { // for debugging only if (DEBUG) { trace(new Throwable(), node.getAttribute(ATT_NAME)); } m_CurrentNode = node; return ((Integer) getPrimitive(node)).intValue(); } /** * builds the primitive from the given DOM node. * * @param node the associated XML node * @return the primitive created from the XML description * @throws Exception if instantiation fails */ public long readLongFromXML(Element node) throws Exception { // for debugging only if (DEBUG) { trace(new Throwable(), node.getAttribute(ATT_NAME)); } m_CurrentNode = node; return ((Long) getPrimitive(node)).longValue(); } /** * builds the primitive from the given DOM node. * * @param node the associated XML node * @return the primitive created from the XML description * @throws Exception if instantiation fails */ public short readShortFromXML(Element node) throws Exception { // for debugging only if (DEBUG) { trace(new Throwable(), node.getAttribute(ATT_NAME)); } m_CurrentNode = node; return ((Short) getPrimitive(node)).shortValue(); } /** * adds the specific node to the object via a set method * * @param o the object to set a property * @param name the name of the object for which to set a property (only for * information reasons) * @param child the value of the property to add * @return the provided object, but augmented by the child * @throws Exception if something goes wrong */ public Object readFromXML(Object o, String name, Element child) throws Exception { Object result; Hashtable descriptors; PropertyDescriptor descriptor; String methodName; Method method; Object[] methodArgs; Object tmpResult; Class paramClass; result = o; descriptors = getDescriptors(result); methodName = child.getAttribute(ATT_NAME); // in ignore list? if (m_Properties.isIgnored(getPath(child))) { return result; } // in ignore list of class? if (m_Properties.isIgnored(result, getPath(child))) { return result; } // is it allowed? if (!m_Properties.isAllowed(result, methodName)) { return result; } descriptor = descriptors.get(methodName); // unknown property? if (descriptor == null) { if (!m_CustomMethods.read().contains(methodName) && !SUPPRESS_PROPERTY_WARNINGS.contains(name + "." + methodName)) { System.out.println("WARNING: unknown property '" + name + "." + methodName + "'!"); } return result; } method = descriptor.getWriteMethod(); methodArgs = new Object[1]; tmpResult = invokeReadFromXML(child); paramClass = method.getParameterTypes()[0]; // array? if (paramClass.isArray()) { // no data? if (Array.getLength(tmpResult) == 0) { return result; } methodArgs[0] = tmpResult; } // non-array else { methodArgs[0] = tmpResult; } try { method.invoke(result, methodArgs); } catch (Exception ex) { System.err.println("Warning: error invoking method: " + methodName + " (" + ex.getCause().getMessage() + ")"); } return result; } /** * returns an array with the dimensions of the array stored in XML * * @param node the node to determine the dimensions for * @return the dimensions of the array */ protected int[] getArrayDimensions(Element node) { Vector children; Vector tmpVector; int[] tmp; int[] result; int i; // have we reached the innermost dimension? if (stringToBoolean(node.getAttribute(ATT_ARRAY))) { children = XMLDocument.getChildTags(node); } else { children = null; } if (children != null) { tmpVector = new Vector(); if (children.size() > 0) { // are children also arrays? tmp = getArrayDimensions(children.get(0)); // further dimensions if (tmp != null) { for (i = tmp.length - 1; i >= 0; i--) { tmpVector.add(new Integer(tmp[i])); } } // add current dimension tmpVector.add(0, new Integer(children.size())); } else { tmpVector.add(new Integer(0)); } // generate result result = new int[tmpVector.size()]; for (i = 0; i < result.length; i++) { result[i] = tmpVector.get(tmpVector.size() - i - 1).intValue(); } } else { result = null; } return result; } /** * builds the object from the given DOM node. (only public due to reflection) * * @param node the associated XML node * @return the instance created from the XML description * @throws Exception if instantiation fails */ public Object readFromXML(Element node) throws Exception { String classname; String name; boolean primitive; boolean array; boolean isnull; Class cls; Vector children; Object result; int i; Constructor constructor; Class[] methodClasses; Object[] methodArgs; Element child; // for debugging only if (DEBUG) { trace(new Throwable(), node.getAttribute(ATT_NAME)); } m_CurrentNode = node; result = null; name = node.getAttribute(ATT_NAME); classname = node.getAttribute(ATT_CLASS); primitive = stringToBoolean(node.getAttribute(ATT_PRIMITIVE)); array = stringToBoolean(node.getAttribute(ATT_ARRAY)); isnull = stringToBoolean(node.getAttribute(ATT_NULL)); // special handling of null if (isnull) { return result; } children = XMLDocument.getChildTags(node); cls = determineClass(classname); // array if (array) { result = Array.newInstance(cls, getArrayDimensions(node)); for (i = 0; i < children.size(); i++) { child = children.get(i); Array.set(result, Integer.parseInt(child.getAttribute(ATT_NAME)), invokeReadFromXML(child)); } } // non-array else { // primitive/String-constructor if (children.size() == 0) { // primitive if (primitive) { result = getPrimitive(node); } // assumed String-constructor else { methodClasses = new Class[1]; methodClasses[0] = String.class; methodArgs = new Object[1]; methodArgs[0] = XMLDocument.getContent(node); try { constructor = cls.getConstructor(methodClasses); result = constructor.newInstance(methodArgs); } catch (Exception e) { // if it's not a class with String constructor, let's try standard // constructor try { result = cls.newInstance(); } catch (Exception e2) { // sorry, can't instantiate! result = null; System.out.println("ERROR: Can't instantiate '" + classname + "'!"); } } } } // normal get/set methods else { result = cls.newInstance(); for (i = 0; i < children.size(); i++) { result = readFromXML(result, name, children.get(i)); } } } return result; } /** * either invokes a custom method to read a specific property/class or the * standard method readFromXML(Element) * * @param node the associated XML node * @return the instance created from the XML description * @throws Exception if instantiation fails */ protected Object invokeReadFromXML(Element node) throws Exception { Method method; Class[] methodClasses; Object[] methodArgs; boolean array; boolean useDefault; useDefault = false; method = null; m_CurrentNode = node; try { // special handling of null values if (stringToBoolean(node.getAttribute(ATT_NULL))) { useDefault = true; } if (!useDefault) { array = stringToBoolean(node.getAttribute(ATT_ARRAY)); // display name? if (m_CustomMethods.read().contains(node.getAttribute(ATT_NAME))) { method = m_CustomMethods.read().get(node.getAttribute(ATT_NAME)); } else // class name? if ((!array) && (m_CustomMethods.read().contains(determineClass(node .getAttribute(ATT_CLASS))))) { method = m_CustomMethods.read().get( determineClass(node.getAttribute(ATT_CLASS))); } else { method = null; } useDefault = (method == null); } // custom method if (!useDefault) { methodClasses = new Class[1]; methodClasses[0] = Element.class; methodArgs = new Object[1]; methodArgs[0] = node; return method.invoke(this, methodArgs); } // standard else { return readFromXML(node); } } catch (Exception e) { if (DEBUG) { e.printStackTrace(); } if (m_CurrentNode != null) { System.out.println("Happened near: " + getPath(m_CurrentNode)); // print it only once! m_CurrentNode = null; } System.out.println("PROBLEM (read): " + node.getAttribute("name")); throw (Exception) e.fillInStackTrace(); } } /** * additional pre-processing can happen in derived classes before the actual * reading from XML (working on the raw XML). right now it does nothing with * the document. * * @param document the document to pre-process * @return the processed object * @throws Exception if post-processing fails */ protected Document readPreProcess(Document document) throws Exception { return document; } /** * additional post-processing can happen in derived classes after reading from * XML. right now it only returns the object as it is. * * @param o the object to perform some additional processing on * @return the processed object * @throws Exception if post-processing fails */ protected Object readPostProcess(Object o) throws Exception { return o; } /** * returns the given DOM document as an instance of the specified class * * @param document the parsed DOM document representing the object * @return the XML as object * @throws Exception if object instantiation fails */ public Object fromXML(Document document) throws Exception { if (!document.getDocumentElement().getNodeName().equals(ROOT_NODE)) { throw new Exception("Expected '" + ROOT_NODE + "' as root element, but found '" + document.getDocumentElement().getNodeName() + "'!"); } m_Document.setDocument(readPreProcess(document)); checkVersion(); return readPostProcess(invokeReadFromXML(m_Document.getDocument() .getDocumentElement())); } /** * parses the given XML string (can be XML or a filename) and returns an * Object generated from the representation * * @param xml the xml to parse (if "toString()
of the generated object. */ public static void main(String[] args) throws Exception { if (args.length > 0) { // read xml and print if (args[0].toLowerCase().endsWith(".xml")) { System.out.println(new XMLSerialization().read(args[0]).toString()); } // read binary and print generated XML else { // read FileInputStream fi = new FileInputStream(args[0]); ObjectInputStream oi = new ObjectInputStream( new BufferedInputStream(fi)); Object o = oi.readObject(); oi.close(); // print to stdout // new XMLSerialization().write(System.out, o); new XMLSerialization().write(new BufferedOutputStream( new FileOutputStream(args[0] + ".xml")), o); // print to binary file FileOutputStream fo = new FileOutputStream(args[0] + ".exp"); ObjectOutputStream oo = new ObjectOutputStream( new BufferedOutputStream(fo)); oo.writeObject(o); oo.close(); } } } /** * Returns the revision string. * * @return the revision */ @Override public String getRevision() { return RevisionUtils.extract("$Revision: 13476 $"); } }





© 2015 - 2024 Weber Informatics LLC | Privacy Policy