weka.core.xml.XMLSerialization Maven / Gradle / Ivy
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/*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see
* The generic approach of writing data as XML can be overriden by adding custom
* methods for reading/writing in a derived class (cf. m_Properties, m_CustomMethods).
* Custom read and write methods must have the same signature (and also be
* public!) as the readFromXML and
* writeToXML methods. Methods that apply to the naming rule
* read + property name are added automatically to the list of
* methods by the method
* XMLSerializationMethodHandler.addMethods(...).
*
* Other properties that are not conform the bean set/get-methods have to be
* processed manually in a derived class (cf.
* readPostProcess(Object), writePostProcess(Object)).
*
* For a complete XML serialization/deserialization have a look at the
* KOML class.
*
* If a stored class has a constructor that takes a String to initialize (e.g.
* String or Double) then the content of the tag will used for the constructor,
* e.g. from
*
*
* <object name="name" class="String" primitive="no">Smith</object>
*
*
* "Smith" will be used to instantiate a String object as constructor argument.
*
*
* @see KOML
* @see #fromXML(Document)
* @see #toXML(Object)
* @see #m_Properties
* @see #m_CustomMethods
* @see #readPostProcess(Object)
* @see #writePostProcess(Object)
* @see #readFromXML(Element)
* @see #writeToXML(Element, Object, String)
*
* @author FracPete (fracpete at waikato dot ac dot nz)
* @version $Revision: 13476 $
*/
public class XMLSerialization implements RevisionHandler {
/** for debugging purposes only */
protected static boolean DEBUG = false;
/**
* the node that is currently processed, in case of writing the parent node
* (something might go wrong writing the new child) and in case of reading the
* actual node that is tried to process
*/
protected Element m_CurrentNode = null;
/** the tag for an object */
public final static String TAG_OBJECT = "object";
/** the version attribute */
public final static String ATT_VERSION = XMLDocument.ATT_VERSION;
/** the tag for the name */
public final static String ATT_NAME = XMLDocument.ATT_NAME;
/** the tag for the class */
public final static String ATT_CLASS = "class";
/** the tag whether primitive or not (yes/no) */
public final static String ATT_PRIMITIVE = "primitive";
/** the tag whether array or not (yes/no) */
public final static String ATT_ARRAY = "array";
/** the tag whether null or not (yes/no) */
public final static String ATT_NULL = "null";
/** the value "yes" for the primitive and array attribute */
public final static String VAL_YES = XMLDocument.VAL_YES;
/** the value "no" for the primitive and array attribute */
public final static String VAL_NO = XMLDocument.VAL_NO;
/** the value of the name for the root node */
public final static String VAL_ROOT = "__root__";
/** the root node of the XML document */
public final static String ROOT_NODE = TAG_OBJECT;
/**
* default value for attribute ATT_PRIMITIVE
*
* @see #ATT_PRIMITIVE
*/
public final static String ATT_PRIMITIVE_DEFAULT = VAL_NO;
/**
* default value for attribute ATT_ARRAY
*
* @see #ATT_ARRAY
*/
public final static String ATT_ARRAY_DEFAULT = VAL_NO;
/**
* default value for attribute ATT_NULL
*
* @see #ATT_NULL
*/
public final static String ATT_NULL_DEFAULT = VAL_NO;
/** the DOCTYPE for the serialization */
public final static String DOCTYPE = "\n" + " \n" + " \n" + " \n" + " \n" + " \n" + " \n" + "]\n" + ">";
/**
* List of fully qualified property names to suppress any warning messages for
*/
public final static List SUPPRESS_PROPERTY_WARNINGS =
new ArrayList();
/** the XMLDocument that performs the transformation to and fro XML */
protected XMLDocument m_Document = null;
/** for handling properties (ignored/allowed) */
protected PropertyHandler m_Properties = null;
/** for handling custom read/write methods */
protected XMLSerializationMethodHandler m_CustomMethods = null;
/**
* for overriding class names (Class <-> Classname (String))
*
* @see #overrideClassname(Object)
*/
protected Hashtable, String> m_ClassnameOverride = null;
/** true to suppress warnings about loading newer/older versions etc. */
protected boolean m_suppressWarnings;
/**
* initializes the serialization
*
* @throws Exception if initialization fails
*/
public XMLSerialization() throws Exception {
super();
clear();
}
/**
* Set whether to suppress warning messages or not
*
* @param suppress true to suppress warnings
*/
public void setSuppressWarnings(boolean suppress) {
m_suppressWarnings = suppress;
}
/**
* used for debugging purposes, i.e. only if DEBUG is set to true. needs a
* newly generated Throwable instance to get the method/line from
*
* @param t a throwable instance, generated in the calling method
* @param msg a message to pring
* @see #DEBUG
*/
protected void trace(Throwable t, String msg) {
if ((DEBUG) && (t.getStackTrace().length > 0)) {
System.out.println("trace: " + t.getStackTrace()[0] + ": " + msg);
}
}
/**
* generates internally a new XML document and clears also the IgnoreList and
* the mappings for the Read/Write-Methods
*
* @throws Exception if something goes wrong
*/
public void clear() throws Exception {
m_Document = new XMLDocument();
m_Document.setValidating(true);
m_Document.newDocument(DOCTYPE, ROOT_NODE);
m_Properties = new PropertyHandler();
m_CustomMethods = new XMLSerializationMethodHandler(this);
m_ClassnameOverride = new Hashtable, String>();
// java.io.File is sometimes represented as another class:
// - Win32: sun.awt.shell.Win32ShellFolder2
// - Linux: sun.awt.shell.DefaultShellFolder
// -> we set it to "java.io.File"
m_ClassnameOverride.put(java.io.File.class, java.io.File.class.getName());
setVersion(Version.VERSION);
m_CurrentNode = null;
}
/**
* sets the given version string in the XML document
*
* @param version the new version string
*/
private void setVersion(String version) {
Document doc;
doc = m_Document.getDocument();
doc.getDocumentElement().setAttribute(ATT_VERSION, version);
}
/**
* returns the WEKA version with which the serialized object was created
*
* @return the current version
* @see Version
*/
public String getVersion() {
Document doc;
String result;
doc = m_Document.getDocument();
result = doc.getDocumentElement().getAttribute(ATT_VERSION);
return result;
}
/**
* Checks the version in the current Document with the one of the current
* release. If the version differ, a warning is printed.
*/
private void checkVersion() {
if (m_suppressWarnings) {
return;
}
String versionStr;
Version version;
version = new Version();
versionStr = getVersion();
if (versionStr.equals("")) {
System.out.println("WARNING: has no version!");
} else if (version.isOlder(versionStr)) {
System.out.println("WARNING: loading a newer version (" + versionStr
+ " > " + Version.VERSION + ")!");
} else if (version.isNewer(versionStr)) {
System.out.println("NOTE: loading an older version (" + versionStr
+ " < " + Version.VERSION + ")!");
}
}
/**
* returns a hashtable with PropertyDescriptors that have "get" and "set"
* methods indexed by the property name.
*
* @see java.beans.PropertyDescriptor
* @param o the object to retrieve the descriptors from
* @return the PropertyDescriptors indexed by name of the property
* @throws Exception if the introspection fails
*/
protected Hashtable getDescriptors(Object o)
throws Exception {
BeanInfo info;
PropertyDescriptor[] desc;
int i;
Hashtable result;
result = new Hashtable();
info = Introspector.getBeanInfo(o.getClass());
desc = info.getPropertyDescriptors();
for (i = 0; i < desc.length; i++) {
// get AND set method?
if ((desc[i].getReadMethod() != null)
&& (desc[i].getWriteMethod() != null)) {
// in ignore list, i.e. a general ignore without complete path?
if (m_Properties.isIgnored(desc[i].getDisplayName())) {
continue;
}
// in ignore list of the class?
if (m_Properties.isIgnored(o, desc[i].getDisplayName())) {
continue;
}
// not an allowed property
if (!m_Properties.isAllowed(o, desc[i].getDisplayName())) {
continue;
}
result.put(desc[i].getDisplayName(), desc[i]);
}
}
return result;
}
/**
* returns the path of the "name" attribute from the root down to this node
* (including it).
*
* @param node the node to get the path for
* @return the complete "name" path of this node
*/
protected String getPath(Element node) {
String result;
result = node.getAttribute(ATT_NAME);
while (node.getParentNode() != node.getOwnerDocument()) {
node = (Element) node.getParentNode();
result = node.getAttribute(ATT_NAME) + "." + result;
}
return result;
}
/**
* returns either VAL_YES or VAL_NO depending on the
* value of b
*
* @param b the boolean to turn into a string
* @return the value in string representation
*/
protected String booleanToString(boolean b) {
if (b) {
return VAL_YES;
} else {
return VAL_NO;
}
}
/**
* turns the given string into a boolean, if a positive number is given, then
* zero is considered FALSE, every other number TRUE; the empty string is also
* considered being FALSE
*
* @param s the string to turn into a boolean
* @return the string as boolean
*/
protected boolean stringToBoolean(String s) {
if (s.equals("")) {
return false;
} else if (s.equals(VAL_YES)) {
return true;
} else if (s.equalsIgnoreCase("true")) {
return true;
} else if (s.replaceAll("[0-9]*", "").equals("")) {
return (Integer.parseInt(s) != 0);
} else {
return false;
}
}
/**
* appends a new node to the parent with the given parameters (a non-array)
*
* @param parent the parent of this node. if it is null the
* document root element is used
* @param name the name of the node
* @param classname the classname for this node
* @param primitive whether it is a primitve data type or not (i.e. an object)
* @return the generated node
*/
protected Element addElement(Element parent, String name, String classname,
boolean primitive) {
return addElement(parent, name, classname, primitive, 0);
}
/**
* appends a new node to the parent with the given parameters
*
* @param parent the parent of this node. if it is null the
* document root element is used
* @param name the name of the node
* @param classname the classname for this node
* @param primitive whether it is a primitve data type or not (i.e. an object)
* @param array the dimensions of the array (0 if not an array)
* @return the generated node
*/
protected Element addElement(Element parent, String name, String classname,
boolean primitive, int array) {
return addElement(parent, name, classname, primitive, array, false);
}
/**
* appends a new node to the parent with the given parameters
*
* @param parent the parent of this node. if it is null the
* document root element is used
* @param name the name of the node
* @param classname the classname for this node
* @param primitive whether it is a primitve data type or not (i.e. an object)
* @param array the dimensions of the array (0 if not an array)
* @param isnull whether it is null
* @return the generated node
*/
protected Element addElement(Element parent, String name, String classname,
boolean primitive, int array, boolean isnull) {
Element result;
if (parent == null) {
result = m_Document.getDocument().getDocumentElement();
} else {
result = (Element) parent.appendChild(m_Document.getDocument()
.createElement(TAG_OBJECT));
}
// attributes
// mandatory attributes:
result.setAttribute(ATT_NAME, name);
result.setAttribute(ATT_CLASS, classname);
// add following attributes only if necessary, i.e., different from default:
if (!booleanToString(primitive).equals(ATT_PRIMITIVE_DEFAULT)) {
result.setAttribute(ATT_PRIMITIVE, booleanToString(primitive));
}
// multi-dimensional array?
if (array > 1) {
result.setAttribute(ATT_ARRAY, Integer.toString(array));
}
// backwards compatible: 0 -> no array ("no"), 1 -> 1-dim. array ("yes")
else {
if (!booleanToString(array == 1).equals(ATT_ARRAY_DEFAULT)) {
result.setAttribute(ATT_ARRAY, booleanToString(array == 1));
}
}
if (!booleanToString(isnull).equals(ATT_NULL_DEFAULT)) {
result.setAttribute(ATT_NULL, booleanToString(isnull));
}
return result;
}
/**
* if the class of the given object (or one of its ancestors) is stored in the
* classname override hashtable, then the override name is returned otherwise
* the classname of the given object.
*
* @param o the object to check for overriding its classname
* @return if overridden then the classname stored in the hashtable, otherwise
* the classname of the given object
* @see #m_ClassnameOverride
*/
protected String overrideClassname(Object o) {
Enumeration> enm;
String result;
Class currentCls;
result = o.getClass().getName();
// check overrides
enm = m_ClassnameOverride.keys();
while (enm.hasMoreElements()) {
currentCls = enm.nextElement();
if (currentCls.isInstance(o)) {
result = m_ClassnameOverride.get(currentCls);
break;
}
}
return result;
}
/**
* if the given classname is stored in the classname override hashtable, then
* the override name is returned otherwise the given classname. Note:
* in contrast to overrideClassname(Object) does this method only
* look for exact name matches. The other method checks whether the class of
* the given object is a subclass of any of the stored overrides.
*
* @param classname the classname to check for overriding
* @return if overridden then the classname stored in the hashtable, otherwise
* the given classname
* @see #m_ClassnameOverride
* @see #overrideClassname(Object)
*/
protected String overrideClassname(String classname) {
Enumeration> enm;
String result;
Class currentCls;
result = classname;
// check overrides
enm = m_ClassnameOverride.keys();
while (enm.hasMoreElements()) {
currentCls = enm.nextElement();
if (currentCls.getName().equals(classname)) {
result = m_ClassnameOverride.get(currentCls);
break;
}
}
return result;
}
/**
* returns a property descriptor if possible, otherwise null
*
* @param className the name of the class to get the descriptor for
* @param displayName the name of the property
* @return the descriptor if available, otherwise null
*/
protected PropertyDescriptor determineDescriptor(String className,
String displayName) {
PropertyDescriptor result;
result = null;
try {
// result = new PropertyDescriptor(displayName, Class.forName(className));
result = new PropertyDescriptor(displayName,
WekaPackageClassLoaderManager.forName(className));
} catch (Exception e) {
result = null;
}
return result;
}
/**
* adds the given primitive to the DOM structure.
*
* @param parent the parent of this object, e.g. the class this object is a
* member of
* @param o the primitive to describe in XML
* @param name the name of the primitive
* @return the node that was created
* @throws Exception if the DOM creation fails
*/
protected Element writeBooleanToXML(Element parent, boolean o, String name)
throws Exception {
Element node;
// for debugging only
if (DEBUG) {
trace(new Throwable(), name);
}
m_CurrentNode = parent;
node = addElement(parent, name, Boolean.TYPE.getName(), true);
node.appendChild(node.getOwnerDocument().createTextNode(
new Boolean(o).toString()));
return node;
}
/**
* adds the given primitive to the DOM structure.
*
* @param parent the parent of this object, e.g. the class this object is a
* member of
* @param o the primitive to describe in XML
* @param name the name of the primitive
* @return the node that was created
* @throws Exception if the DOM creation fails
*/
protected Element writeByteToXML(Element parent, byte o, String name)
throws Exception {
Element node;
// for debugging only
if (DEBUG) {
trace(new Throwable(), name);
}
m_CurrentNode = parent;
node = addElement(parent, name, Byte.TYPE.getName(), true);
node.appendChild(node.getOwnerDocument().createTextNode(
new Byte(o).toString()));
return node;
}
/**
* adds the given primitive to the DOM structure.
*
* @param parent the parent of this object, e.g. the class this object is a
* member of
* @param o the primitive to describe in XML
* @param name the name of the primitive
* @return the node that was created
* @throws Exception if the DOM creation fails
*/
protected Element writeCharToXML(Element parent, char o, String name)
throws Exception {
Element node;
// for debugging only
if (DEBUG) {
trace(new Throwable(), name);
}
m_CurrentNode = parent;
node = addElement(parent, name, Character.TYPE.getName(), true);
node.appendChild(node.getOwnerDocument().createTextNode(
new Character(o).toString()));
return node;
}
/**
* adds the given primitive to the DOM structure.
*
* @param parent the parent of this object, e.g. the class this object is a
* member of
* @param o the primitive to describe in XML
* @param name the name of the primitive
* @return the node that was created
* @throws Exception if the DOM creation fails
*/
protected Element writeDoubleToXML(Element parent, double o, String name)
throws Exception {
Element node;
// for debugging only
if (DEBUG) {
trace(new Throwable(), name);
}
m_CurrentNode = parent;
node = addElement(parent, name, Double.TYPE.getName(), true);
node.appendChild(node.getOwnerDocument().createTextNode(
new Double(o).toString()));
return node;
}
/**
* adds the given primitive to the DOM structure.
*
* @param parent the parent of this object, e.g. the class this object is a
* member of
* @param o the primitive to describe in XML
* @param name the name of the primitive
* @return the node that was created
* @throws Exception if the DOM creation fails
*/
protected Element writeFloatToXML(Element parent, float o, String name)
throws Exception {
Element node;
// for debugging only
if (DEBUG) {
trace(new Throwable(), name);
}
m_CurrentNode = parent;
node = addElement(parent, name, Float.TYPE.getName(), true);
node.appendChild(node.getOwnerDocument().createTextNode(
new Float(o).toString()));
return node;
}
/**
* adds the given primitive to the DOM structure.
*
* @param parent the parent of this object, e.g. the class this object is a
* member of
* @param o the primitive to describe in XML
* @param name the name of the primitive
* @return the node that was created
* @throws Exception if the DOM creation fails
*/
protected Element writeIntToXML(Element parent, int o, String name)
throws Exception {
Element node;
// for debugging only
if (DEBUG) {
trace(new Throwable(), name);
}
m_CurrentNode = parent;
node = addElement(parent, name, Integer.TYPE.getName(), true);
node.appendChild(node.getOwnerDocument().createTextNode(
new Integer(o).toString()));
return node;
}
/**
* adds the given primitive to the DOM structure.
*
* @param parent the parent of this object, e.g. the class this object is a
* member of
* @param o the primitive to describe in XML
* @param name the name of the primitive
* @return the node that was created
* @throws Exception if the DOM creation fails
*/
protected Element writeLongToXML(Element parent, long o, String name)
throws Exception {
Element node;
// for debugging only
if (DEBUG) {
trace(new Throwable(), name);
}
m_CurrentNode = parent;
node = addElement(parent, name, Long.TYPE.getName(), true);
node.appendChild(node.getOwnerDocument().createTextNode(
new Long(o).toString()));
return node;
}
/**
* adds the given primitive to the DOM structure.
*
* @param parent the parent of this object, e.g. the class this object is a
* member of
* @param o the primitive to describe in XML
* @param name the name of the primitive
* @return the node that was created
* @throws Exception if the DOM creation fails
*/
protected Element writeShortToXML(Element parent, short o, String name)
throws Exception {
Element node;
// for debugging only
if (DEBUG) {
trace(new Throwable(), name);
}
m_CurrentNode = parent;
node = addElement(parent, name, Short.TYPE.getName(), true);
node.appendChild(node.getOwnerDocument().createTextNode(
new Short(o).toString()));
return node;
}
/**
* checks whether the innermost class is a primitive class (handles
* multi-dimensional arrays)
*
* @param c the array class to inspect
* @return whether the array consists of primitive elements
*/
protected boolean isPrimitiveArray(Class c) {
if (c.getComponentType().isArray()) {
return isPrimitiveArray(c.getComponentType());
} else {
return c.getComponentType().isPrimitive();
}
}
/**
* adds the given Object to a DOM structure. (only public due to reflection).
* Note: overrideClassname(Object) is not invoked in case
* of arrays, since the array class could be a superclass, whereas the
* elements of the array can be specialized subclasses. In case of an array
* the method overrideClassname(String) is invoked, which
* searches for an exact match of the classname in the override hashtable.
*
* @param parent the parent of this object, e.g. the class this object is a
* member of
* @param o the Object to describe in XML
* @param name the name of the object
* @return the node that was created
* @throws Exception if the DOM creation fails
* @see #overrideClassname(Object)
* @see #overrideClassname(String)
* @see #m_ClassnameOverride
*/
public Element writeToXML(Element parent, Object o, String name)
throws Exception {
String classname;
Element node;
Hashtable memberlist;
Enumeration enm;
Object member;
String memberName;
Method method;
PropertyDescriptor desc;
boolean primitive;
int array;
int i;
Object obj;
String tmpStr;
node = null;
// for debugging only
if (DEBUG) {
trace(new Throwable(), name);
}
// special handling of null-objects
if (o == null) {
node = addElement(parent, name, "" + null, false, 0, true);
return node;
}
// used for overriding the classname
obj = null;
// get information about object
array = 0;
if (o.getClass().isArray()) {
array = Utils.getArrayDimensions(o);
}
if (array > 0) {
classname = Utils.getArrayClass(o.getClass()).getName();
primitive = isPrimitiveArray(o.getClass());
} else {
// try to get property descriptor to determine real class
// (for primitives the getClass() method returns the corresponding
// Object-Class!)
desc = null;
if (parent != null) {
desc = determineDescriptor(parent.getAttribute(ATT_CLASS), name);
}
if (desc != null) {
primitive = desc.getPropertyType().isPrimitive();
} else {
primitive = o.getClass().isPrimitive();
}
// for primitives: retrieve primitive type, otherwise the object's real
// class. For non-primitives we can't use the descriptor, since that
// might only return an interface as class!
if (primitive) {
classname = desc.getPropertyType().getName();
} else {
obj = o;
classname = o.getClass().getName();
}
}
// fix class/primitive if parent is array of primitives, thanks to
// reflection the elements of the array are objects and not primitives!
if ((parent != null) && (!parent.getAttribute(ATT_ARRAY).equals(""))
&& (!parent.getAttribute(ATT_ARRAY).equals(VAL_NO))
&& (stringToBoolean(parent.getAttribute(ATT_PRIMITIVE)))) {
primitive = true;
classname = parent.getAttribute(ATT_CLASS);
obj = null;
}
// perhaps we need to override the classname
if (obj != null) {
classname = overrideClassname(obj); // for non-arrays
} else {
classname = overrideClassname(classname); // for arrays
}
// create node for current object
node = addElement(parent, name, classname, primitive, array);
// array? -> save as child with 'name=""'
if (array > 0) {
for (i = 0; i < Array.getLength(o); i++) {
invokeWriteToXML(node, Array.get(o, i), Integer.toString(i));
}
}
// non-array
else {
// primitive? -> only toString()
if (primitive) {
node.appendChild(node.getOwnerDocument().createTextNode(o.toString()));
}
// object
else {
// process recursively members of this object
memberlist = getDescriptors(o);
// if no get/set methods -> we assume it has String-Constructor
if (memberlist.size() == 0) {
if (!o.toString().equals("")) {
tmpStr = o.toString();
// these five entities are recognized by every XML processor
// see http://www.xml.com/pub/a/2001/03/14/trxml10.html
tmpStr = tmpStr.replaceAll("&", "&").replaceAll("\"", """)
.replaceAll("'", "'").replaceAll("<", "<")
.replaceAll(">", ">");
// in addition, replace some other entities as well
tmpStr = tmpStr.replaceAll("\n", "
").replaceAll("\r", "
")
.replaceAll("\t", " ");
if (o instanceof java.io.File) {
// hack to force separators to be always saved as /
tmpStr = tmpStr.replace('\\', '/');
}
node.appendChild(node.getOwnerDocument().createTextNode(tmpStr));
}
} else {
enm = memberlist.keys();
while (enm.hasMoreElements()) {
memberName = enm.nextElement().toString();
// in ignore list?
if ((m_Properties.isIgnored(memberName))
|| (m_Properties.isIgnored(getPath(node) + "." + memberName))
|| (m_Properties.isIgnored(o, getPath(node) + "." + memberName))) {
continue;
}
// is it allowed?
if (!m_Properties.isAllowed(o, memberName)) {
continue;
}
desc = memberlist.get(memberName);
method = desc.getReadMethod();
member = method.invoke(o, (Object[]) null);
invokeWriteToXML(node, member, memberName);
}
}
}
}
return node;
}
/**
* either invokes a custom method to write a specific property/class or the
* standard method writeToXML(Element,Object,String)
*
* @param parent the parent XML node
* @param o the object's content will be added as children to the given parent
* node
* @param name the name of the object
* @return the node that was created
* @throws Exception if invocation or turning into XML fails
*/
protected Element invokeWriteToXML(Element parent, Object o, String name)
throws Exception {
Method method;
Class[] methodClasses;
Object[] methodArgs;
boolean array;
Element node;
boolean useDefault;
node = null;
method = null;
useDefault = false;
m_CurrentNode = parent;
// default, if null
if (o == null) {
useDefault = true;
}
try {
if (!useDefault) {
array = o.getClass().isArray();
// display name?
if (m_CustomMethods.write().contains(name)) {
method = m_CustomMethods.write().get(o.getClass());
} else
// class?
if ((!array) && (m_CustomMethods.write().contains(o.getClass()))) {
method = m_CustomMethods.write().get(o.getClass());
} else {
method = null;
}
useDefault = (method == null);
}
// custom
if (!useDefault) {
methodClasses = new Class[3];
methodClasses[0] = Element.class;
methodClasses[1] = Object.class;
methodClasses[2] = String.class;
methodArgs = new Object[3];
methodArgs[0] = parent;
methodArgs[1] = o;
methodArgs[2] = name;
node = (Element) method.invoke(this, methodArgs);
}
// standard
else {
node = writeToXML(parent, o, name);
}
} catch (Exception e) {
if (DEBUG) {
e.printStackTrace();
}
if (m_CurrentNode != null) {
System.out.println("Happened near: " + getPath(m_CurrentNode));
// print it only once!
m_CurrentNode = null;
}
System.out.println("PROBLEM (write): " + name);
throw (Exception) e.fillInStackTrace();
}
return node;
}
/**
* enables derived classes to due some pre-processing on the objects, that's
* about to be serialized. Right now it only returns the object.
*
* @param o the object that is serialized into XML
* @return the possibly altered object
* @throws Exception if post-processing fails
*/
protected Object writePreProcess(Object o) throws Exception {
return o;
}
/**
* enables derived classes to add other properties to the DOM tree, e.g. ones
* that do not apply to the get/set convention of beans. only implemented with
* empty method body.
*
* @param o the object that is serialized into XML
* @throws Exception if post-processing fails
*/
protected void writePostProcess(Object o) throws Exception {
}
/**
* extracts all accesible properties from the given object
*
* @param o the object to turn into an XML representation
* @return the generated DOM document
* @throws Exception if XML generation fails
*/
public XMLDocument toXML(Object o) throws Exception {
clear();
invokeWriteToXML(null, writePreProcess(o), VAL_ROOT);
writePostProcess(o);
return m_Document;
}
/**
* returns a descriptor for a given objet by providing the name
*
* @param o the object the get the descriptor for
* @param name the display name of the descriptor
* @return the Descriptor, if found, otherwise null
* @throws Exception if introsepction fails
*/
protected PropertyDescriptor getDescriptorByName(Object o, String name)
throws Exception {
PropertyDescriptor result;
PropertyDescriptor[] desc;
int i;
result = null;
desc = Introspector.getBeanInfo(o.getClass()).getPropertyDescriptors();
for (i = 0; i < desc.length; i++) {
if (desc[i].getDisplayName().equals(name)) {
result = desc[i];
break;
}
}
return result;
}
/**
* returns the associated class for the given name
*
* @param name the name of the class to return a Class object for
* @return the class if it could be retrieved
* @throws Exception if it class retrieval fails
*/
protected Class determineClass(String name) throws Exception {
Class result;
if (name.equals(Boolean.TYPE.getName())) {
result = Boolean.TYPE;
} else if (name.equals(Byte.TYPE.getName())) {
result = Byte.TYPE;
} else if (name.equals(Character.TYPE.getName())) {
result = Character.TYPE;
} else if (name.equals(Double.TYPE.getName())) {
result = Double.TYPE;
} else if (name.equals(Float.TYPE.getName())) {
result = Float.TYPE;
} else if (name.equals(Integer.TYPE.getName())) {
result = Integer.TYPE;
} else if (name.equals(Long.TYPE.getName())) {
result = Long.TYPE;
} else if (name.equals(Short.TYPE.getName())) {
result = Short.TYPE;
} else {
// result = Class.forName(name);
result = WekaPackageClassLoaderManager.forName(name);
}
return result;
}
/**
* returns an Object representing the primitive described by the given node.
* Here we use a trick to return an object even though its a primitive: by
* creating a primitive array with reflection of length 1, setting the
* primtive value as real object and then returning the "object" at position 1
* of the array.
*
* @param node the node to return the value as "primitive" object
* @return the primitive as "pseudo" object
* @throws Exception if the instantiation of the array fails or any of the
* String conversions fails
*/
protected Object getPrimitive(Element node) throws Exception {
Object result;
Object tmpResult;
Class cls;
cls = determineClass(node.getAttribute(ATT_CLASS));
tmpResult = Array.newInstance(cls, 1);
if (cls == Boolean.TYPE) {
Array.set(tmpResult, 0, new Boolean(XMLDocument.getContent(node)));
} else if (cls == Byte.TYPE) {
Array.set(tmpResult, 0, new Byte(XMLDocument.getContent(node)));
} else if (cls == Character.TYPE) {
Array.set(tmpResult, 0, new Character(XMLDocument.getContent(node)
.charAt(0)));
} else if (cls == Double.TYPE) {
Array.set(tmpResult, 0, new Double(XMLDocument.getContent(node)));
} else if (cls == Float.TYPE) {
Array.set(tmpResult, 0, new Float(XMLDocument.getContent(node)));
} else if (cls == Integer.TYPE) {
Array.set(tmpResult, 0, new Integer(XMLDocument.getContent(node)));
} else if (cls == Long.TYPE) {
Array.set(tmpResult, 0, new Long(XMLDocument.getContent(node)));
} else if (cls == Short.TYPE) {
Array.set(tmpResult, 0, new Short(XMLDocument.getContent(node)));
} else {
throw new Exception("Cannot get primitive for class '" + cls.getName()
+ "'!");
}
result = Array.get(tmpResult, 0);
return result;
}
/**
* builds the primitive from the given DOM node.
*
* @param node the associated XML node
* @return the primitive created from the XML description
* @throws Exception if instantiation fails
*/
public boolean readBooleanFromXML(Element node) throws Exception {
// for debugging only
if (DEBUG) {
trace(new Throwable(), node.getAttribute(ATT_NAME));
}
m_CurrentNode = node;
return ((Boolean) getPrimitive(node)).booleanValue();
}
/**
* builds the primitive from the given DOM node.
*
* @param node the associated XML node
* @return the primitive created from the XML description
* @throws Exception if instantiation fails
*/
public byte readByteFromXML(Element node) throws Exception {
// for debugging only
if (DEBUG) {
trace(new Throwable(), node.getAttribute(ATT_NAME));
}
m_CurrentNode = node;
return ((Byte) getPrimitive(node)).byteValue();
}
/**
* builds the primitive from the given DOM node.
*
* @param node the associated XML node
* @return the primitive created from the XML description
* @throws Exception if instantiation fails
*/
public char readCharFromXML(Element node) throws Exception {
// for debugging only
if (DEBUG) {
trace(new Throwable(), node.getAttribute(ATT_NAME));
}
m_CurrentNode = node;
return ((Character) getPrimitive(node)).charValue();
}
/**
* builds the primitive from the given DOM node.
*
* @param node the associated XML node
* @return the primitive created from the XML description
* @throws Exception if instantiation fails
*/
public double readDoubleFromXML(Element node) throws Exception {
// for debugging only
if (DEBUG) {
trace(new Throwable(), node.getAttribute(ATT_NAME));
}
m_CurrentNode = node;
return ((Double) getPrimitive(node)).doubleValue();
}
/**
* builds the primitive from the given DOM node.
*
* @param node the associated XML node
* @return the primitive created from the XML description
* @throws Exception if instantiation fails
*/
public float readFloatFromXML(Element node) throws Exception {
// for debugging only
if (DEBUG) {
trace(new Throwable(), node.getAttribute(ATT_NAME));
}
m_CurrentNode = node;
return ((Float) getPrimitive(node)).floatValue();
}
/**
* builds the primitive from the given DOM node.
*
* @param node the associated XML node
* @return the primitive created from the XML description
* @throws Exception if instantiation fails
*/
public int readIntFromXML(Element node) throws Exception {
// for debugging only
if (DEBUG) {
trace(new Throwable(), node.getAttribute(ATT_NAME));
}
m_CurrentNode = node;
return ((Integer) getPrimitive(node)).intValue();
}
/**
* builds the primitive from the given DOM node.
*
* @param node the associated XML node
* @return the primitive created from the XML description
* @throws Exception if instantiation fails
*/
public long readLongFromXML(Element node) throws Exception {
// for debugging only
if (DEBUG) {
trace(new Throwable(), node.getAttribute(ATT_NAME));
}
m_CurrentNode = node;
return ((Long) getPrimitive(node)).longValue();
}
/**
* builds the primitive from the given DOM node.
*
* @param node the associated XML node
* @return the primitive created from the XML description
* @throws Exception if instantiation fails
*/
public short readShortFromXML(Element node) throws Exception {
// for debugging only
if (DEBUG) {
trace(new Throwable(), node.getAttribute(ATT_NAME));
}
m_CurrentNode = node;
return ((Short) getPrimitive(node)).shortValue();
}
/**
* adds the specific node to the object via a set method
*
* @param o the object to set a property
* @param name the name of the object for which to set a property (only for
* information reasons)
* @param child the value of the property to add
* @return the provided object, but augmented by the child
* @throws Exception if something goes wrong
*/
public Object readFromXML(Object o, String name, Element child)
throws Exception {
Object result;
Hashtable descriptors;
PropertyDescriptor descriptor;
String methodName;
Method method;
Object[] methodArgs;
Object tmpResult;
Class paramClass;
result = o;
descriptors = getDescriptors(result);
methodName = child.getAttribute(ATT_NAME);
// in ignore list?
if (m_Properties.isIgnored(getPath(child))) {
return result;
}
// in ignore list of class?
if (m_Properties.isIgnored(result, getPath(child))) {
return result;
}
// is it allowed?
if (!m_Properties.isAllowed(result, methodName)) {
return result;
}
descriptor = descriptors.get(methodName);
// unknown property?
if (descriptor == null) {
if (!m_CustomMethods.read().contains(methodName)
&& !SUPPRESS_PROPERTY_WARNINGS.contains(name + "." + methodName)) {
System.out.println("WARNING: unknown property '" + name + "."
+ methodName + "'!");
}
return result;
}
method = descriptor.getWriteMethod();
methodArgs = new Object[1];
tmpResult = invokeReadFromXML(child);
paramClass = method.getParameterTypes()[0];
// array?
if (paramClass.isArray()) {
// no data?
if (Array.getLength(tmpResult) == 0) {
return result;
}
methodArgs[0] = tmpResult;
}
// non-array
else {
methodArgs[0] = tmpResult;
}
try {
method.invoke(result, methodArgs);
} catch (Exception ex) {
System.err.println("Warning: error invoking method: " + methodName + " ("
+ ex.getCause().getMessage() + ")");
}
return result;
}
/**
* returns an array with the dimensions of the array stored in XML
*
* @param node the node to determine the dimensions for
* @return the dimensions of the array
*/
protected int[] getArrayDimensions(Element node) {
Vector children;
Vector tmpVector;
int[] tmp;
int[] result;
int i;
// have we reached the innermost dimension?
if (stringToBoolean(node.getAttribute(ATT_ARRAY))) {
children = XMLDocument.getChildTags(node);
} else {
children = null;
}
if (children != null) {
tmpVector = new Vector();
if (children.size() > 0) {
// are children also arrays?
tmp = getArrayDimensions(children.get(0));
// further dimensions
if (tmp != null) {
for (i = tmp.length - 1; i >= 0; i--) {
tmpVector.add(new Integer(tmp[i]));
}
}
// add current dimension
tmpVector.add(0, new Integer(children.size()));
} else {
tmpVector.add(new Integer(0));
}
// generate result
result = new int[tmpVector.size()];
for (i = 0; i < result.length; i++) {
result[i] = tmpVector.get(tmpVector.size() - i - 1).intValue();
}
} else {
result = null;
}
return result;
}
/**
* builds the object from the given DOM node. (only public due to reflection)
*
* @param node the associated XML node
* @return the instance created from the XML description
* @throws Exception if instantiation fails
*/
public Object readFromXML(Element node) throws Exception {
String classname;
String name;
boolean primitive;
boolean array;
boolean isnull;
Class cls;
Vector children;
Object result;
int i;
Constructor constructor;
Class[] methodClasses;
Object[] methodArgs;
Element child;
// for debugging only
if (DEBUG) {
trace(new Throwable(), node.getAttribute(ATT_NAME));
}
m_CurrentNode = node;
result = null;
name = node.getAttribute(ATT_NAME);
classname = node.getAttribute(ATT_CLASS);
primitive = stringToBoolean(node.getAttribute(ATT_PRIMITIVE));
array = stringToBoolean(node.getAttribute(ATT_ARRAY));
isnull = stringToBoolean(node.getAttribute(ATT_NULL));
// special handling of null
if (isnull) {
return result;
}
children = XMLDocument.getChildTags(node);
cls = determineClass(classname);
// array
if (array) {
result = Array.newInstance(cls, getArrayDimensions(node));
for (i = 0; i < children.size(); i++) {
child = children.get(i);
Array.set(result, Integer.parseInt(child.getAttribute(ATT_NAME)),
invokeReadFromXML(child));
}
}
// non-array
else {
// primitive/String-constructor
if (children.size() == 0) {
// primitive
if (primitive) {
result = getPrimitive(node);
}
// assumed String-constructor
else {
methodClasses = new Class[1];
methodClasses[0] = String.class;
methodArgs = new Object[1];
methodArgs[0] = XMLDocument.getContent(node);
try {
constructor = cls.getConstructor(methodClasses);
result = constructor.newInstance(methodArgs);
} catch (Exception e) {
// if it's not a class with String constructor, let's try standard
// constructor
try {
result = cls.newInstance();
} catch (Exception e2) {
// sorry, can't instantiate!
result = null;
System.out.println("ERROR: Can't instantiate '" + classname
+ "'!");
}
}
}
}
// normal get/set methods
else {
result = cls.newInstance();
for (i = 0; i < children.size(); i++) {
result = readFromXML(result, name, children.get(i));
}
}
}
return result;
}
/**
* either invokes a custom method to read a specific property/class or the
* standard method readFromXML(Element)
*
* @param node the associated XML node
* @return the instance created from the XML description
* @throws Exception if instantiation fails
*/
protected Object invokeReadFromXML(Element node) throws Exception {
Method method;
Class[] methodClasses;
Object[] methodArgs;
boolean array;
boolean useDefault;
useDefault = false;
method = null;
m_CurrentNode = node;
try {
// special handling of null values
if (stringToBoolean(node.getAttribute(ATT_NULL))) {
useDefault = true;
}
if (!useDefault) {
array = stringToBoolean(node.getAttribute(ATT_ARRAY));
// display name?
if (m_CustomMethods.read().contains(node.getAttribute(ATT_NAME))) {
method = m_CustomMethods.read().get(node.getAttribute(ATT_NAME));
} else
// class name?
if ((!array)
&& (m_CustomMethods.read().contains(determineClass(node
.getAttribute(ATT_CLASS))))) {
method = m_CustomMethods.read().get(
determineClass(node.getAttribute(ATT_CLASS)));
} else {
method = null;
}
useDefault = (method == null);
}
// custom method
if (!useDefault) {
methodClasses = new Class[1];
methodClasses[0] = Element.class;
methodArgs = new Object[1];
methodArgs[0] = node;
return method.invoke(this, methodArgs);
}
// standard
else {
return readFromXML(node);
}
} catch (Exception e) {
if (DEBUG) {
e.printStackTrace();
}
if (m_CurrentNode != null) {
System.out.println("Happened near: " + getPath(m_CurrentNode));
// print it only once!
m_CurrentNode = null;
}
System.out.println("PROBLEM (read): " + node.getAttribute("name"));
throw (Exception) e.fillInStackTrace();
}
}
/**
* additional pre-processing can happen in derived classes before the actual
* reading from XML (working on the raw XML). right now it does nothing with
* the document.
*
* @param document the document to pre-process
* @return the processed object
* @throws Exception if post-processing fails
*/
protected Document readPreProcess(Document document) throws Exception {
return document;
}
/**
* additional post-processing can happen in derived classes after reading from
* XML. right now it only returns the object as it is.
*
* @param o the object to perform some additional processing on
* @return the processed object
* @throws Exception if post-processing fails
*/
protected Object readPostProcess(Object o) throws Exception {
return o;
}
/**
* returns the given DOM document as an instance of the specified class
*
* @param document the parsed DOM document representing the object
* @return the XML as object
* @throws Exception if object instantiation fails
*/
public Object fromXML(Document document) throws Exception {
if (!document.getDocumentElement().getNodeName().equals(ROOT_NODE)) {
throw new Exception("Expected '" + ROOT_NODE
+ "' as root element, but found '"
+ document.getDocumentElement().getNodeName() + "'!");
}
m_Document.setDocument(readPreProcess(document));
checkVersion();
return readPostProcess(invokeReadFromXML(m_Document.getDocument()
.getDocumentElement()));
}
/**
* parses the given XML string (can be XML or a filename) and returns an
* Object generated from the representation
*
* @param xml the xml to parse (if "toString()
of the generated object.
*/
public static void main(String[] args) throws Exception {
if (args.length > 0) {
// read xml and print
if (args[0].toLowerCase().endsWith(".xml")) {
System.out.println(new XMLSerialization().read(args[0]).toString());
}
// read binary and print generated XML
else {
// read
FileInputStream fi = new FileInputStream(args[0]);
ObjectInputStream oi = new ObjectInputStream(
new BufferedInputStream(fi));
Object o = oi.readObject();
oi.close();
// print to stdout
// new XMLSerialization().write(System.out, o);
new XMLSerialization().write(new BufferedOutputStream(
new FileOutputStream(args[0] + ".xml")), o);
// print to binary file
FileOutputStream fo = new FileOutputStream(args[0] + ".exp");
ObjectOutputStream oo = new ObjectOutputStream(
new BufferedOutputStream(fo));
oo.writeObject(o);
oo.close();
}
}
}
/**
* Returns the revision string.
*
* @return the revision
*/
@Override
public String getRevision() {
return RevisionUtils.extract("$Revision: 13476 $");
}
}