weka.filters.CheckSource Maven / Gradle / Ivy
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/*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program; if not, write to the Free Software
* Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA.
*/
/*
* CheckSource.java
* Copyright (C) 2007 University of Waikato, Hamilton, New Zealand
*/
package weka.filters;
import weka.core.Instance;
import weka.core.Instances;
import weka.core.Option;
import weka.core.OptionHandler;
import weka.core.RevisionHandler;
import weka.core.RevisionUtils;
import weka.core.Utils;
import weka.core.converters.ConverterUtils.DataSource;
import java.io.File;
import java.util.Enumeration;
import java.util.Vector;
/**
* A simple class for checking the source generated from Filters
* implementing the weka.filters.Sourcable interface.
* It takes a filter, the classname of the generated source
* and the dataset the source was generated with as parameters and tests
* the output of the built filter against the output of the generated
* source. Use option '-h' to display all available commandline options.
*
* Valid options are:
*
* -W <classname and options>
* The filter (incl. options) that was used to generate
* the source code.
*
* -S <classname>
* The classname of the generated source code.
*
* -t <file>
* The training set with which the source code was generated.
*
* -c <index>
* The class index of the training set. 'first' and 'last' are
* valid indices.
* (default: none)
*
*
* Options after -- are passed to the designated filter.
*
* @author fracpete (fracpete at waikato dot ac dot nz)
* @version $Revision: 1.3 $
* @see weka.filters.Sourcable
*/
public class CheckSource
implements OptionHandler, RevisionHandler {
/** the classifier used for generating the source code */
protected Filter m_Filter = null;
/** the generated source code */
protected Filter m_SourceCode = null;
/** the dataset to use for testing */
protected File m_Dataset = null;
/** the class index */
protected int m_ClassIndex = -1;
/**
* Returns an enumeration describing the available options.
*
* @return an enumeration of all the available options.
*/
public Enumeration listOptions() {
Vector result = new Vector();
result.addElement(new Option(
"\tThe filter (incl. options) that was used to generate\n"
+ "\tthe source code.",
"W", 1, "-W "));
result.addElement(new Option(
"\tThe classname of the generated source code.",
"S", 1, "-S "));
result.addElement(new Option(
"\tThe training set with which the source code was generated.",
"t", 1, "-t "));
result.addElement(new Option(
"\tThe class index of the training set. 'first' and 'last' are\n"
+ "\tvalid indices.\n"
+ "\t(default: none)",
"c", 1, "-c "));
return result.elements();
}
/**
* Parses a given list of options.
*
* Valid options are:
*
* -W <classname and options>
* The filter (incl. options) that was used to generate
* the source code.
*
* -S <classname>
* The classname of the generated source code.
*
* -t <file>
* The training set with which the source code was generated.
*
* -c <index>
* The class index of the training set. 'first' and 'last' are
* valid indices.
* (default: none)
*
*
* Options after -- are passed to the designated filter.
*
* @param options the list of options as an array of strings
* @throws Exception if an option is not supported
*/
public void setOptions(String[] options) throws Exception {
String tmpStr;
String[] spec;
String classname;
tmpStr = Utils.getOption('W', options);
if (tmpStr.length() > 0) {
spec = Utils.splitOptions(tmpStr);
if (spec.length == 0)
throw new IllegalArgumentException("Invalid filter specification string");
classname = spec[0];
spec[0] = "";
setFilter((Filter) Utils.forName(Filter.class, classname, spec));
}
else {
throw new Exception("No filter (classname + options) provided!");
}
tmpStr = Utils.getOption('S', options);
if (tmpStr.length() > 0) {
spec = Utils.splitOptions(tmpStr);
if (spec.length != 1)
throw new IllegalArgumentException("Invalid source code specification string");
classname = spec[0];
spec[0] = "";
setSourceCode((Filter) Utils.forName(Filter.class, classname, spec));
}
else {
throw new Exception("No source code (classname) provided!");
}
tmpStr = Utils.getOption('t', options);
if (tmpStr.length() != 0)
setDataset(new File(tmpStr));
else
throw new Exception("No dataset provided!");
tmpStr = Utils.getOption('c', options);
if (tmpStr.length() != 0) {
if (tmpStr.equals("first"))
setClassIndex(0);
else if (tmpStr.equals("last"))
setClassIndex(-2);
else
setClassIndex(Integer.parseInt(tmpStr) - 1);
}
else {
setClassIndex(-1);
}
}
/**
* Gets the current settings of the filter.
*
* @return an array of strings suitable for passing to setOptions
*/
public String[] getOptions() {
Vector result;
result = new Vector();
if (getFilter() != null) {
result.add("-W");
result.add(getFilter().getClass().getName() + " "
+ Utils.joinOptions(((OptionHandler) getFilter()).getOptions()));
}
if (getSourceCode() != null) {
result.add("-S");
result.add(getSourceCode().getClass().getName());
}
if (getDataset() != null) {
result.add("-t");
result.add(m_Dataset.getAbsolutePath());
}
if (getClassIndex() != -1) {
result.add("-c");
if (getClassIndex() == -2)
result.add("last");
else if (getClassIndex() == 0)
result.add("first");
else
result.add("" + (getClassIndex() + 1));
}
return result.toArray(new String[result.size()]);
}
/**
* Sets the filter to use for the comparison.
*
* @param value the filter to use
*/
public void setFilter(Filter value) {
m_Filter = value;
}
/**
* Gets the filter being used for the tests, can be null.
*
* @return the currently set filter
*/
public Filter getFilter() {
return m_Filter;
}
/**
* Sets the class to test.
*
* @param value the class to test
*/
public void setSourceCode(Filter value) {
m_SourceCode = value;
}
/**
* Gets the class to test.
*
* @return the currently set class, can be null.
*/
public Filter getSourceCode() {
return m_SourceCode;
}
/**
* Sets the dataset to use for testing.
*
* @param value the dataset to use.
*/
public void setDataset(File value) {
if (!value.exists())
throw new IllegalArgumentException(
"Dataset '" + value.getAbsolutePath() + "' does not exist!");
else
m_Dataset = value;
}
/**
* Gets the dataset to use for testing, can be null.
*
* @return the dataset to use.
*/
public File getDataset() {
return m_Dataset;
}
/**
* Sets the class index of the dataset.
*
* @param value the class index of the dataset.
*/
public void setClassIndex(int value) {
m_ClassIndex = value;
}
/**
* Gets the class index of the dataset.
*
* @return the current class index.
*/
public int getClassIndex() {
return m_ClassIndex;
}
/**
* compares two Instance
*
* @param inst1 the first Instance object to compare
* @param inst2 the second Instance object to compare
* @return true if both are the same
*/
protected boolean compare(Instance inst1, Instance inst2) {
boolean result;
int i;
// check dimension
result = (inst1.numAttributes() == inst2.numAttributes());
// check content
if (result) {
for (i = 0; i < inst1.numAttributes(); i++) {
if (Double.isNaN(inst1.value(i)) && (Double.isNaN(inst2.value(i))))
continue;
if (inst1.value(i) != inst2.value(i)) {
result = false;
System.out.println(
"Values at position " + (i+1) + " differ (Filter/Source code): "
+ inst1.value(i) + " != " + inst2.value(i));
break;
}
}
}
return result;
}
/**
* compares the two Instances objects
*
* @param inst1 the first Instances object to compare
* @param inst2 the second Instances object to compare
* @return true if both are the same
*/
protected boolean compare(Instances inst1, Instances inst2) {
boolean result;
int i;
// check dimensions
result = (inst1.numInstances() == inst2.numInstances());
// check content
if (result) {
for (i = 0; i < inst1.numInstances(); i++) {
result = compare(inst1.instance(i), inst2.instance(i));
if (!result) {
System.out.println(
"Values in line " + (i+1) + " differ!");
break;
}
}
}
return result;
}
/**
* performs the comparison test
*
* @return true if tests were successful
* @throws Exception if tests fail
*/
public boolean execute() throws Exception {
boolean result;
Instances data;
Instance filteredInstance;
Instances filteredInstances;
Instance filteredInstanceSource;
Instances filteredInstancesSource;
DataSource source;
Filter filter;
Filter filterSource;
int i;
result = true;
// a few checks
if (getFilter() == null)
throw new Exception("No filter set!");
if (getSourceCode() == null)
throw new Exception("No source code set!");
if (getDataset() == null)
throw new Exception("No dataset set!");
if (!getDataset().exists())
throw new Exception(
"Dataset '" + getDataset().getAbsolutePath() + "' does not exist!");
// load data
source = new DataSource(getDataset().getAbsolutePath());
data = source.getDataSet();
if (getClassIndex() == -2)
data.setClassIndex(data.numAttributes() - 1);
else
data.setClassIndex(getClassIndex());
// compare output
// 1. batch filtering
filter = Filter.makeCopy(getFilter());
filter.setInputFormat(data);
filteredInstances = Filter.useFilter(data, filter);
filterSource = Filter.makeCopy(getSourceCode());
filterSource.setInputFormat(data);
filteredInstancesSource = Filter.useFilter(data, filterSource);
result = compare(filteredInstances, filteredInstancesSource);
// 2. instance by instance
if (result) {
filter = Filter.makeCopy(getFilter());
filter.setInputFormat(data);
Filter.useFilter(data, filter);
filterSource = Filter.makeCopy(getSourceCode());
filterSource.setInputFormat(data);
for (i = 0; i < data.numInstances(); i++) {
filter.input(data.instance(i));
filter.batchFinished();
filteredInstance = filter.output();
filterSource.input(data.instance(i));
filterSource.batchFinished();
filteredInstanceSource = filterSource.output();
if (!compare(filteredInstance, filteredInstanceSource))
System.out.println(
(i+1) + ". instance (Filter/Source code): "
+ filteredInstance + " != " + filteredInstanceSource);
}
}
return result;
}
/**
* Returns the revision string.
*
* @return the revision
*/
public String getRevision() {
return RevisionUtils.extract("$Revision: 1.3 $");
}
/**
* Executes the tests, use "-h" to list the commandline options.
*
* @param args the commandline parameters
* @throws Exception if something goes wrong
*/
public static void main(String[] args) throws Exception{
CheckSource check;
StringBuffer text;
Enumeration enm;
check = new CheckSource();
if (Utils.getFlag('h', args)) {
text = new StringBuffer();
text.append("\nHelp requested:\n\n");
enm = check.listOptions();
while (enm.hasMoreElements()) {
Option option = (Option) enm.nextElement();
text.append(option.synopsis() + "\n");
text.append(option.description() + "\n");
}
System.out.println("\n" + text + "\n");
}
else {
check.setOptions(args);
if (check.execute())
System.out.println("Tests OK!");
else
System.out.println("Tests failed!");
}
}
}