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/*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see .
*/
/*
* CrossValidationFoldMaker.java
* Copyright (C) 2002-2012 University of Waikato, Hamilton, New Zealand
*
*/
package weka.gui.beans;
import java.io.Serializable;
import java.util.Enumeration;
import java.util.Random;
import java.util.Vector;
import weka.core.Instances;
/**
* Bean for splitting instances into training ant test sets according to a cross
* validation
*
* @author Mark Hall
* @version $Revision: 10220 $
*/
public class CrossValidationFoldMaker extends AbstractTrainAndTestSetProducer
implements DataSourceListener, TrainingSetListener, TestSetListener,
UserRequestAcceptor, EventConstraints, Serializable, StructureProducer {
/** for serialization */
private static final long serialVersionUID = -6350179298851891512L;
private int m_numFolds = 10;
private int m_randomSeed = 1;
private boolean m_preserveOrder = false;
private transient Thread m_foldThread = null;
private boolean m_dataProvider = false;
private boolean m_trainingProvider = false;
private boolean m_testProvider = false;
public CrossValidationFoldMaker() {
m_visual.loadIcons(BeanVisual.ICON_PATH + "CrossValidationFoldMaker.gif",
BeanVisual.ICON_PATH + "CrossValidationFoldMaker_animated.gif");
m_visual.setText("CrossValidationFoldMaker");
}
private Instances getUpstreamStructure() {
if (m_listenee != null && m_listenee instanceof StructureProducer) {
if (m_dataProvider) {
return ((StructureProducer) m_listenee).getStructure("dataSet");
}
if (m_trainingProvider) {
return ((StructureProducer) m_listenee).getStructure("trainingSet");
}
if (m_testProvider) {
return ((StructureProducer) m_listenee).getStructure("testSet");
}
}
return null;
}
/**
* Get the structure of the output encapsulated in the named event. If the
* structure can't be determined in advance of seeing input, or this
* StructureProducer does not generate the named event, null should be
* returned.
*
* @param eventName the name of the output event that encapsulates the
* requested output.
*
* @return the structure of the output encapsulated in the named event or null
* if it can't be determined in advance of seeing input or the named
* event is not generated by this StructureProduce.
*/
@Override
public Instances getStructure(String eventName) {
if (!eventName.equals("trainingSet") && !eventName.equals("testSet")) {
return null;
}
if (m_listenee == null) {
return null;
}
if (eventName.equals("trainingSet") && m_trainingListeners.size() == 0) {
// downstream has asked for the structure of something that we
// are not producing at the moment
return null;
}
if (eventName.equals("testSet") && m_testListeners.size() == 0) {
// downstream has asked for the structure of something that we
// are not producing at the moment
return null;
}
return getUpstreamStructure();
}
/**
* Notify this object that it has been registered as a listener with a source
* with respect to the supplied event name
*
* @param eventName the event
* @param source the source with which this object has been registered as a
* listener
*/
@Override
public synchronized void connectionNotification(String eventName,
Object source) {
super.connectionNotification(eventName, source);
if (connectionAllowed(eventName)) {
if (eventName.equals("dataSet")) {
m_dataProvider = true;
m_trainingProvider = false;
m_testProvider = false;
} else if (eventName.equals("trainingSet")) {
m_dataProvider = false;
m_trainingProvider = true;
m_testProvider = false;
} else if (eventName.equals("testSet")) {
m_dataProvider = false;
m_trainingProvider = false;
m_testProvider = true;
}
}
}
/**
* Notify this object that it has been deregistered as a listener with a
* source with respect to the supplied event name
*
* @param eventName the event
* @param source the source with which this object has been registered as a
* listener
*/
@Override
public synchronized void disconnectionNotification(String eventName,
Object source) {
super.disconnectionNotification(eventName, source);
if (m_listenee == null) {
m_dataProvider = false;
m_trainingProvider = false;
m_testProvider = false;
}
}
/**
* Set a custom (descriptive) name for this bean
*
* @param name the name to use
*/
@Override
public void setCustomName(String name) {
m_visual.setText(name);
}
/**
* Get the custom (descriptive) name for this bean (if one has been set)
*
* @return the custom name (or the default name)
*/
@Override
public String getCustomName() {
return m_visual.getText();
}
/**
* Global info for this bean
*
* @return a String value
*/
public String globalInfo() {
return "Split an incoming data set into cross validation folds. "
+ "Separate train and test sets are produced for each of the k folds.";
}
/**
* Accept a training set
*
* @param e a TrainingSetEvent value
*/
@Override
public void acceptTrainingSet(TrainingSetEvent e) {
Instances trainingSet = e.getTrainingSet();
DataSetEvent dse = new DataSetEvent(this, trainingSet);
acceptDataSet(dse);
}
/**
* Accept a test set
*
* @param e a TestSetEvent value
*/
@Override
public void acceptTestSet(TestSetEvent e) {
Instances testSet = e.getTestSet();
DataSetEvent dse = new DataSetEvent(this, testSet);
acceptDataSet(dse);
}
/**
* Accept a data set
*
* @param e a DataSetEvent value
*/
@Override
public void acceptDataSet(DataSetEvent e) {
if (e.isStructureOnly()) {
// Pass on structure to training and test set listeners
TrainingSetEvent tse = new TrainingSetEvent(this, e.getDataSet());
TestSetEvent tsee = new TestSetEvent(this, e.getDataSet());
notifyTrainingSetProduced(tse);
notifyTestSetProduced(tsee);
return;
}
if (m_foldThread == null) {
final Instances dataSet = new Instances(e.getDataSet());
m_foldThread = new Thread() {
@Override
public void run() {
boolean errorOccurred = false;
try {
Random random = new Random(getSeed());
if (!m_preserveOrder) {
dataSet.randomize(random);
}
if (dataSet.classIndex() >= 0
&& dataSet.attribute(dataSet.classIndex()).isNominal()
&& !m_preserveOrder) {
dataSet.stratify(getFolds());
if (m_logger != null) {
m_logger.logMessage("[" + getCustomName() + "] "
+ "stratifying data");
}
}
for (int i = 0; i < getFolds(); i++) {
if (m_foldThread == null) {
if (m_logger != null) {
m_logger.logMessage("[" + getCustomName()
+ "] Cross validation has been canceled!");
}
// exit gracefully
break;
}
Instances train = (!m_preserveOrder) ? dataSet.trainCV(
getFolds(), i, random) : dataSet.trainCV(getFolds(), i);
Instances test = dataSet.testCV(getFolds(), i);
// inform all training set listeners
TrainingSetEvent tse = new TrainingSetEvent(this, train);
tse.m_setNumber = i + 1;
tse.m_maxSetNumber = getFolds();
String msg = getCustomName() + "$"
+ CrossValidationFoldMaker.this.hashCode() + "|";
if (m_logger != null) {
m_logger.statusMessage(msg + "seed: " + getSeed() + " folds: "
+ getFolds() + "|Training fold " + (i + 1));
}
if (m_foldThread != null) {
// System.err.println("--Just before notify training set");
notifyTrainingSetProduced(tse);
// System.err.println("---Just after notify");
}
// inform all test set listeners
TestSetEvent teste = new TestSetEvent(this, test);
teste.m_setNumber = i + 1;
teste.m_maxSetNumber = getFolds();
if (m_logger != null) {
m_logger.statusMessage(msg + "seed: " + getSeed() + " folds: "
+ getFolds() + "|Test fold " + (i + 1));
}
if (m_foldThread != null) {
notifyTestSetProduced(teste);
}
}
} catch (Exception ex) {
// stop all processing
errorOccurred = true;
if (m_logger != null) {
m_logger.logMessage("[" + getCustomName()
+ "] problem during fold creation. " + ex.getMessage());
}
ex.printStackTrace();
CrossValidationFoldMaker.this.stop();
} finally {
m_foldThread = null;
if (errorOccurred) {
if (m_logger != null) {
m_logger.statusMessage(getCustomName() + "$"
+ CrossValidationFoldMaker.this.hashCode() + "|"
+ "ERROR (See log for details).");
}
} else if (isInterrupted()) {
String msg = "[" + getCustomName()
+ "] Cross validation interrupted";
if (m_logger != null) {
m_logger.logMessage("[" + getCustomName()
+ "] Cross validation interrupted");
m_logger.statusMessage(getCustomName() + "$"
+ CrossValidationFoldMaker.this.hashCode() + "|"
+ "INTERRUPTED");
} else {
System.err.println(msg);
}
} else {
String msg = getCustomName() + "$"
+ CrossValidationFoldMaker.this.hashCode() + "|";
if (m_logger != null) {
m_logger.statusMessage(msg + "Finished.");
}
}
block(false);
}
}
};
m_foldThread.setPriority(Thread.MIN_PRIORITY);
m_foldThread.start();
// if (m_foldThread.isAlive()) {
block(true);
// }
m_foldThread = null;
}
}
/**
* Notify all test set listeners of a TestSet event
*
* @param tse a TestSetEvent value
*/
@SuppressWarnings("unchecked")
private void notifyTestSetProduced(TestSetEvent tse) {
Vector l;
synchronized (this) {
l = (Vector) m_testListeners.clone();
}
if (l.size() > 0) {
for (int i = 0; i < l.size(); i++) {
if (m_foldThread == null) {
break;
}
// System.err.println("Notifying test listeners "
// +"(cross validation fold maker)");
l.elementAt(i).acceptTestSet(tse);
}
}
}
/**
* Notify all listeners of a TrainingSet event
*
* @param tse a TrainingSetEvent value
*/
@SuppressWarnings("unchecked")
protected void notifyTrainingSetProduced(TrainingSetEvent tse) {
Vector l;
synchronized (this) {
l = (Vector) m_trainingListeners.clone();
}
if (l.size() > 0) {
for (int i = 0; i < l.size(); i++) {
if (m_foldThread == null) {
break;
}
// System.err.println("Notifying training listeners "
// +"(cross validation fold maker)");
l.elementAt(i).acceptTrainingSet(tse);
}
}
}
/**
* Set the number of folds for the cross validation
*
* @param numFolds an int value
*/
public void setFolds(int numFolds) {
m_numFolds = numFolds;
}
/**
* Get the currently set number of folds
*
* @return an int value
*/
public int getFolds() {
return m_numFolds;
}
/**
* Tip text for this property
*
* @return a String value
*/
public String foldsTipText() {
return "The number of train and test splits to produce";
}
/**
* Set the seed
*
* @param randomSeed an int value
*/
public void setSeed(int randomSeed) {
m_randomSeed = randomSeed;
}
/**
* Get the currently set seed
*
* @return an int value
*/
public int getSeed() {
return m_randomSeed;
}
/**
* Tip text for this property
*
* @return a String value
*/
public String seedTipText() {
return "The randomization seed";
}
/**
* Returns true if the order of the incoming instances is to be preserved
* under cross-validation (no randomization or stratification is done in this
* case).
*
* @return true if the order of the incoming instances is to be preserved.
*/
public boolean getPreserveOrder() {
return m_preserveOrder;
}
/**
* Sets whether the order of the incoming instances is to be preserved under
* cross-validation (no randomization or stratification is done in this case).
*
* @param p true if the order is to be preserved.
*/
public void setPreserveOrder(boolean p) {
m_preserveOrder = p;
}
/**
* Returns true if. at this time, the bean is busy with some (i.e. perhaps a
* worker thread is performing some calculation).
*
* @return true if the bean is busy.
*/
@Override
public boolean isBusy() {
return (m_foldThread != null);
}
/**
* Stop any action
*/
@Override
@SuppressWarnings("deprecation")
public void stop() {
// tell the listenee (upstream bean) to stop
if (m_listenee instanceof BeanCommon) {
// System.err.println("Listener is BeanCommon");
((BeanCommon) m_listenee).stop();
}
// stop the fold thread
if (m_foldThread != null) {
Thread temp = m_foldThread;
m_foldThread = null;
temp.interrupt();
temp.stop();
}
}
/**
* Function used to stop code that calls acceptDataSet. This is needed as
* cross validation is performed inside a separate thread of execution.
*
* @param tf a boolean value
*/
private synchronized void block(boolean tf) {
if (tf) {
try {
// make sure the thread is still running before we block
if (m_foldThread != null && m_foldThread.isAlive()) {
wait();
}
} catch (InterruptedException ex) {
}
} else {
notifyAll();
}
}
/**
* Return an enumeration of user requests
*
* @return an Enumeration value
*/
@Override
public Enumeration enumerateRequests() {
Vector newVector = new Vector(0);
if (m_foldThread != null) {
newVector.addElement("Stop");
}
return newVector.elements();
}
/**
* Perform the named request
*
* @param request a String value
* @exception IllegalArgumentException if an error occurs
*/
@Override
public void performRequest(String request) {
if (request.compareTo("Stop") == 0) {
stop();
} else {
throw new IllegalArgumentException(request
+ " not supported (CrossValidation)");
}
}
/**
* Returns true, if at the current time, the named event could be generated.
* Assumes that the supplied event name is an event that could be generated by
* this bean
*
* @param eventName the name of the event in question
* @return true if the named event could be generated at this point in time
*/
@Override
public boolean eventGeneratable(String eventName) {
if (m_listenee == null) {
return false;
}
if (m_listenee instanceof EventConstraints) {
if (((EventConstraints) m_listenee).eventGeneratable("dataSet")
|| ((EventConstraints) m_listenee).eventGeneratable("trainingSet")
|| ((EventConstraints) m_listenee).eventGeneratable("testSet")) {
return true;
} else {
return false;
}
}
return true;
}
}
