com.tinkerpop.blueprints.oupls.sail.GraphSailConnection Maven / Gradle / Ivy
package com.tinkerpop.blueprints.oupls.sail;
import com.tinkerpop.blueprints.Direction;
import com.tinkerpop.blueprints.Edge;
import com.tinkerpop.blueprints.TransactionalGraph;
import com.tinkerpop.blueprints.Vertex;
import com.tinkerpop.blueprints.util.StringFactory;
import info.aduna.iteration.CloseableIteration;
import net.fortytwo.sesametools.CompoundCloseableIteration;
import net.fortytwo.sesametools.SailConnectionTripleSource;
import org.openrdf.model.Namespace;
import org.openrdf.model.Resource;
import org.openrdf.model.Statement;
import org.openrdf.model.URI;
import org.openrdf.model.Value;
import org.openrdf.model.impl.NamespaceImpl;
import org.openrdf.query.BindingSet;
import org.openrdf.query.Dataset;
import org.openrdf.query.QueryEvaluationException;
import org.openrdf.query.algebra.TupleExpr;
import org.openrdf.query.algebra.evaluation.TripleSource;
import org.openrdf.query.algebra.evaluation.impl.EvaluationStrategyImpl;
import org.openrdf.query.algebra.evaluation.iterator.CollectionIteration;
import org.openrdf.sail.SailException;
import org.openrdf.sail.helpers.DefaultSailChangedEvent;
import org.openrdf.sail.helpers.NotifyingSailConnectionBase;
import org.openrdf.sail.inferencer.InferencerConnection;
import java.util.Collection;
import java.util.HashSet;
import java.util.Iterator;
import java.util.LinkedList;
import java.util.Set;
/**
* A stateful connection to a GraphSail RDF store
*
* @author Joshua Shinavier (http://fortytwo.net)
*/
public class GraphSailConnection extends NotifyingSailConnectionBase implements InferencerConnection {
private static final Resource[] NULL_CONTEXT_ARRAY = {null};
private final GraphSail.DataStore store;
private final Collection writeBuffer = new LinkedList();
private boolean statementsAdded;
private boolean statementsRemoved;
/**
* The subject that was just seen when adding a statement.
*/
private Resource prevSubject = null;
/**
* The vertex corresponding to {@link #prevSubject}.
*/
private Vertex prevOutVertex = null;
public GraphSailConnection(final GraphSail.DataStore store) {
super(store.sail);
this.store = store;
}
protected void startTransactionInternal() throws SailException {
statementsAdded = false;
statementsRemoved = false;
prevSubject = null;
prevOutVertex = null;
}
public void commitInternal() throws SailException {
if (store.isTransactional) {
((TransactionalGraph) store.graph).commit();
}
if (statementsAdded || statementsRemoved) {
DefaultSailChangedEvent e = new DefaultSailChangedEvent(store.sail);
e.setStatementsAdded(statementsAdded);
e.setStatementsRemoved(statementsRemoved);
store.sail.notifySailChanged(e);
}
}
public void rollbackInternal() throws SailException {
if (store.isTransactional) {
((TransactionalGraph) store.graph).rollback();
}
}
public void closeInternal() throws SailException {
// Roll back any uncommitted operations.
if (store.isTransactional) {
((TransactionalGraph) store.graph).rollback();
}
}
public CloseableIteration evaluateInternal(TupleExpr tupleExpr,
final Dataset dataset,
final BindingSet bindings,
final boolean includeInferred) throws SailException {
try {
TripleSource tripleSource = new SailConnectionTripleSource(this, store.valueFactory, includeInferred);
EvaluationStrategyImpl strategy = new EvaluationStrategyImpl(tripleSource, dataset);
return strategy.evaluate(tupleExpr, bindings);
} catch (QueryEvaluationException e) {
throw new SailException(e);
}
}
// note: iterates over all statements
public CloseableIteration getContextIDsInternal() throws SailException {
Set contexts = new HashSet();
CloseableIteration iter = getStatementsInternal(null, null, null, false);
try {
while (iter.hasNext()) {
Resource context = iter.next().getContext();
// match the behavior of Sesame stores, which do not include the null context
if (null != context) {
contexts.add(context);
}
}
} finally {
iter.close();
}
return new CollectionIteration(contexts);
}
public CloseableIteration getStatementsInternal(final Resource subject,
final URI predicate,
final Value object,
final boolean includeInferred,
final Resource... contexts) throws SailException {
int index = 0;
if (null != subject) {
index |= 0x1;
}
if (null != predicate) {
index |= 0x2;
}
if (null != object) {
index |= 0x4;
}
if (0 == contexts.length) {
return createIteration(store.matchers[index].match(subject, predicate, object, null, includeInferred));
} else {
Collection> iterations = new LinkedList>();
// TODO: as an optimization, filter on multiple contexts simultaneously (when context is not used in the matcher), rather than trying each context consecutively.
for (Resource context : contexts) {
index |= 0x8;
Matcher m = store.matchers[index];
iterations.add(createIteration(m.match(subject, predicate, object, context, includeInferred)));
}
return new CompoundCloseableIteration(iterations);
}
}
// Note: inferred statements are not counted
public long sizeInternal(final Resource... contexts) throws SailException {
if (0 == contexts.length) {
return countIterator(store.matchers[0x0].match(null, null, null, null, false));
} else {
int count = 0;
for (Resource context : contexts) {
count += countIterator(store.matchers[0x8].match(null, null, null, context, false));
}
return count;
}
}
private int countIterator(final Iterable i) {
Iterator iter = i.iterator();
int count = 0;
while (iter.hasNext()) {
count++;
iter.next();
}
return count;
}
public void addStatementInternal(final Resource subject,
final URI predicate,
final Value object,
final Resource... contexts) throws SailException {
addStatementInternal(false, subject, predicate, object, contexts);
}
private void addStatementInternal(final boolean inferred,
final Resource subject,
final URI predicate,
final Value object,
final Resource... contexts) throws SailException {
if (!canWrite()) {
WriteAction a = new WriteAction(ActionType.ADD);
a.inferred = inferred;
a.subject = subject;
a.predicate = predicate;
a.object = object;
a.contexts = contexts;
queueUpdate(a);
return;
}
if (null == subject || null == predicate || null == object) {
throw new IllegalArgumentException("null part-of-speech for to-be-added statement");
}
for (Resource context : ((0 == contexts.length) ? NULL_CONTEXT_ARRAY : contexts)) {
String contextStr = null == context ? GraphSail.NULL_CONTEXT_NATIVE : store.resourceToNative(context);
// Track the subject since data will often list relations for the same subject consecutively.
Vertex out = subject.equals(prevSubject) ? prevOutVertex
: (prevOutVertex = getOrCreateVertex(prevSubject = subject));
// object-level identity of subject and object facilitates creation of self-loop edges in some Graph implementations
Vertex in = subject.equals(object) ? out : getOrCreateVertex(object);
// if enforcing uniqueness of statements, check for an edge identical to the one we are about to add
if (store.uniqueStatements) {
Iterator prevEdges = out.query().direction(Direction.OUT)
.has(StringFactory.LABEL, predicate.stringValue())
.has(GraphSail.CONTEXT_PROP, contextStr)
.edges().iterator();
boolean found = false;
Object objectId = in.getId();
while (prevEdges.hasNext()) {
if (prevEdges.next().getVertex(Direction.IN).getId().equals(objectId)) {
found = true;
break;
}
}
if (found) {
continue;
}
}
Edge edge = store.graph.addEdge(null, out, in, predicate.stringValue());
if (inferred) {
edge.setProperty(GraphSail.INFERRED, true);
}
for (IndexingMatcher m : (Collection) store.indexers) {
m.indexStatement(edge, subject, predicate, object, contextStr);
}
// Hack to encode graph context even if the "c" index is disabled
if (null == edge.getProperty(GraphSail.CONTEXT_PROP)) {
edge.setProperty(GraphSail.CONTEXT_PROP, contextStr);
}
if (hasConnectionListeners()) {
Statement s = store.valueFactory.createStatement(subject, predicate, object, context);
notifyStatementAdded(s);
}
statementsAdded = true;
}
}
private Vertex getOrCreateVertex(final Value value) {
Vertex v = store.getVertex(value);
if (null == v) {
v = store.addVertex(value);
}
return v;
}
public void removeStatementsInternal(final Resource subject, final URI predicate, final Value object, final Resource... contexts) throws SailException {
removeStatementsInternal(false, subject, predicate, object, contexts);
}
private void removeStatementsInternal(final boolean inferred,
final Resource subject,
final URI predicate,
final Value object,
final Resource... contexts) throws SailException {
if (!canWrite()) {
WriteAction a = new WriteAction(ActionType.REMOVE);
a.inferred = inferred;
a.subject = subject;
a.predicate = predicate;
a.object = object;
a.contexts = contexts;
queueUpdate(a);
return;
}
Collection edgesToRemove = new LinkedList();
int index = 0;
if (null != subject) {
index |= 0x1;
}
if (null != predicate) {
index |= 0x2;
}
if (null != object) {
index |= 0x4;
}
if (0 == contexts.length) {
Iterable i = store.matchers[index].match(subject, predicate, object, null, inferred);
for (Edge anI : i) {
edgesToRemove.add(anI);
}
} else {
// TODO: as an optimization, filter on multiple contexts simultaneously (when context is not used in the matcher), rather than trying each context consecutively.
for (Resource context : contexts) {
index |= 0x8;
Iterable i = store.matchers[index].match(subject, predicate, object, context, inferred);
for (Edge e : i) {
Boolean b = e.getProperty(GraphSail.INFERRED);
if ((!inferred && null == b)
|| (inferred && null != b && b)) {
edgesToRemove.add(e);
}
}
}
}
for (Edge e : edgesToRemove) {
SimpleStatement s;
if (hasConnectionListeners()) {
s = new SimpleStatement();
fillStatement(s, e);
} else {
s = null;
}
removeEdge(e);
if (null != s) {
notifyStatementRemoved(s);
}
}
if (0 < edgesToRemove.size()) {
statementsRemoved = true;
prevSubject = null;
prevOutVertex = null;
}
}
public void clearInternal(final Resource... contexts) throws SailException {
clearInternal(false, contexts);
}
private void clearInternal(final boolean inferred,
final Resource... contexts) throws SailException {
if (!canWrite()) {
WriteAction a = new WriteAction(ActionType.CLEAR);
a.inferred = inferred;
a.contexts = contexts;
queueUpdate(a);
return;
}
if (0 == contexts.length) {
deleteEdgesInIterator(inferred, store.matchers[0x0].match(null, null, null, null, inferred));
} else {
for (Resource context : contexts) {
// Note: order of operands to the "or" is important here
deleteEdgesInIterator(inferred, store.matchers[0x8].match(null, null, null, context, inferred));
}
}
}
private void deleteEdgesInIterator(final boolean inferred,
final Iterable i) {
Iterator iter = i.iterator();
while (iter.hasNext()) {
Edge e = iter.next();
Boolean b = e.getProperty(GraphSail.INFERRED);
if ((!inferred && null == b)
|| (inferred && null != b && b)) {
SimpleStatement s;
if (hasConnectionListeners()) {
s = new SimpleStatement();
fillStatement(s, e);
} else {
s = null;
}
try {
iter.remove();
} catch (UnsupportedOperationException x) {
// TODO: it so happens that Neo4jGraph, the only IndexableGraph implementation so far tested whose
// iterators don't support remove(), does *not* throw ConcurrentModificationExceptions when you
// delete an edge in an iterator currently being traversed. So for now, just ignore the
// UnsupportedOperationException and proceed to delete the edge from the graph.
}
removeEdge(e);
if (null != s) {
notifyStatementRemoved(s);
}
statementsRemoved = true;
prevSubject = null;
prevOutVertex = null;
}
}
}
private void removeEdge(final Edge edge) {
Vertex h = edge.getVertex(Direction.IN);
Vertex t = edge.getVertex(Direction.OUT);
store.graph.removeEdge(edge);
if (!h.getEdges(Direction.IN).iterator().hasNext() && !h.getEdges(Direction.OUT).iterator().hasNext()) {
try {
store.graph.removeVertex(h);
} catch (IllegalStateException ex) {
// Just keep going. This is a hack for Neo4j vertices which appear in more than
// one to-be-deleted edge.
}
}
if (!t.getEdges(Direction.OUT).iterator().hasNext() && !t.getEdges(Direction.IN).iterator().hasNext()) {
try {
store.graph.removeVertex(t);
} catch (IllegalStateException ex) {
// Just keep going. This is a hack for Neo4j vertices which appear in more than
// one to-be-deleted edge.
}
}
}
public CloseableIteration getNamespacesInternal() throws SailException {
final Iterator prefixes = store.namespaces.getPropertyKeys().iterator();
return new CloseableIteration() {
public void close() throws SailException {
// Do nothing.
}
public boolean hasNext() throws SailException {
return prefixes.hasNext();
}
public Namespace next() throws SailException {
String prefix = prefixes.next();
String uri = store.namespaces.getProperty(prefix);
return new NamespaceImpl(fromNativePrefixKey(prefix), uri);
}
public void remove() throws SailException {
throw new UnsupportedOperationException();
}
};
}
public String getNamespaceInternal(final String prefix) throws SailException {
return (String) store.namespaces.getProperty(toNativePrefixKey(prefix));
}
public void setNamespaceInternal(final String prefix, final String uri) throws SailException {
store.namespaces.setProperty(toNativePrefixKey(prefix), uri);
}
public void removeNamespaceInternal(final String prefix) throws SailException {
store.namespaces.removeProperty(toNativePrefixKey(prefix));
}
public void clearNamespacesInternal() throws SailException {
throw new UnsupportedOperationException("the clearNamespaces operation is not yet supported");
}
// write lock //////////////////////////////////////////////////////////////
private int writeSemaphore = 0;
private boolean canWrite() {
return 0 == writeSemaphore;
}
private void writeSemaphoreUp() {
writeSemaphore++;
}
private void writeSemaphoreDown() throws SailException {
writeSemaphore--;
if (0 == writeSemaphore) {
flushWrites();
}
}
private void queueUpdate(final WriteAction a) throws SailException {
if (0 == writeSemaphore) {
a.execute();
} else {
writeBuffer.add(a);
}
}
private void flushWrites() throws SailException {
for (WriteAction a : writeBuffer) {
switch (a.type) {
case ADD:
addStatementInternal(true, a.subject, a.predicate, a.object, a.contexts);
break;
case REMOVE:
removeStatementsInternal(true, a.subject, a.predicate, a.object, a.contexts);
break;
case CLEAR:
clearInternal(true, a.contexts);
break;
}
}
writeBuffer.clear();
}
// inference ///////////////////////////////////////////////////////////////
private enum ActionType {ADD, REMOVE, CLEAR}
private class WriteAction {
public final ActionType type;
public WriteAction(final ActionType type) {
this.type = type;
}
public Resource subject;
public URI predicate;
public Value object;
public Resource[] contexts;
public boolean inferred = true;
public void execute() throws SailException {
switch (type) {
case ADD:
addStatementInternal(inferred, subject, predicate, object, contexts);
break;
case REMOVE:
removeStatementsInternal(inferred, subject, predicate, object, contexts);
break;
case CLEAR:
clearInternal(inferred, contexts);
break;
}
}
}
@Override
public boolean addInferredStatement(final Resource subject,
final URI predicate,
final Value object,
final Resource... contexts) throws SailException {
for (Resource context : (0 == contexts.length ? NULL_CONTEXT_ARRAY : contexts)) {
boolean doAdd = true;
if (store.uniqueStatements) {
CloseableIteration i
= getStatementsInternal(subject, predicate, object, true, context);
try {
if (i.hasNext()) {
doAdd = false;
}
} finally {
i.close();
}
}
if (doAdd) {
addStatementInternal(true, subject, predicate, object, context);
}
}
// Note: the meaning of the return value is not documented (in the Sesame 2.7.9 JavaDocs)
return false;
}
@Override
public boolean removeInferredStatement(final Resource subject,
final URI predicate,
final Value object,
final Resource... contexts) throws SailException {
removeStatementsInternal(true, subject, predicate, object, contexts);
// Note: the meaning of the return value is not documented (in the Sesame 2.7.9 JavaDocs)
return false;
}
@Override
public void clearInferred(final Resource... contexts) throws SailException {
clearInternal(true, contexts);
}
@Override
public void flushUpdates() throws SailException {
// No-op
}
// statement iteration /////////////////////////////////////////////////////
private CloseableIteration createIteration(final Iterable iterator) {
return store.volatileStatements
? new VolatileStatementIteration(iterator)
: new StableStatementIteration(iterator);
}
private class StableStatementIteration implements CloseableIteration {
private final Iterator iter;
private boolean closed = false;
public StableStatementIteration(final Iterable iterator) {
writeSemaphoreUp();
iter = iterator.iterator();
}
public void close() throws SailException {
if (!closed) {
closed = true;
writeSemaphoreDown();
}
}
public boolean hasNext() throws SailException {
// Note: this used to throw an IllegalStateException if the iteration had already been closed,
// but such is not the behavior of Aduna's LookAheadIteration, which simply does not provide any more
// elements if the iteration has already been closed.
// The CloseableIteration API says nothing about what to expect from a closed iteration,
// so the behavior of LookAheadIteration will be taken as definitive.
return !closed && iter.hasNext();
}
public Statement next() throws SailException {
if (closed) {
throw new IllegalStateException("already closed");
}
Edge e = iter.next();
SimpleStatement s = new SimpleStatement();
fillStatement(s, e);
return s;
}
public void remove() throws SailException {
throw new UnsupportedOperationException();
}
}
private void fillStatement(final SimpleStatement s,
final Edge e) {
s.subject = (Resource) toSesame(e.getVertex(Direction.OUT));
s.predicate = store.valueFactory.createURI(e.getLabel());
s.object = toSesame(e.getVertex(Direction.IN));
s.context = (Resource) toSesame((String) e.getProperty(GraphSail.CONTEXT_PROP));
}
private class VolatileStatementIteration implements CloseableIteration {
private final SimpleStatement s = new SimpleStatement();
private final Iterator iter;
public VolatileStatementIteration(final Iterable iterator) {
iter = iterator.iterator();
}
public void close() throws SailException {
}
public boolean hasNext() throws SailException {
return iter.hasNext();
}
public Statement next() throws SailException {
Edge e = iter.next();
fillStatement(s, e);
return s;
}
public void remove() throws SailException {
throw new UnsupportedOperationException();
}
}
/**
* A POJO statement containing a subject, predicate, object and context.
* The purpose of using a special Statement implementation (rather than using an existing ValueFactory) is to
* guarantee that it does not contain anything which would interfere
* with JDK optimization aimed at eliminating creation of short-lived (Statement) objects.
* You can observe the effect of such interference by un-commenting the finalize() method below.
*/
private class SimpleStatement implements Statement {
private Resource subject;
private URI predicate;
private Value object;
private Resource context;
public Resource getSubject() {
return subject;
}
public URI getPredicate() {
return predicate;
}
public Value getObject() {
return object;
}
public Resource getContext() {
return context;
}
/*
protected void finalize() throws Throwable {
super.finalize();
}
//*/
public String toString() {
StringBuilder sb = new StringBuilder();
sb.append("(").append(subject).append(", ").append(predicate).append(", ").append(object);
if (null != context) {
sb.append(", ").append(context);
}
sb.append(")");
return sb.toString();
}
}
// value conversion ////////////////////////////////////////////////////////
private String toNativePrefixKey(final String prefix) {
return 0 == prefix.length() ? GraphSail.DEFAULT_NAMESPACE_PREFIX_KEY : prefix;
}
private String fromNativePrefixKey(final String prefix) {
return prefix.equals(GraphSail.DEFAULT_NAMESPACE_PREFIX_KEY) ? "" : prefix;
}
private Value toSesame(final Vertex v) {
String value = v.getProperty(GraphSail.VALUE);
String kind = v.getProperty(GraphSail.KIND);
if (kind.equals(GraphSail.URI)) {
return store.valueFactory.createURI(value);
} else if (kind.equals(GraphSail.LITERAL)) {
String datatype = v.getProperty(GraphSail.TYPE);
String lang = v.getProperty(GraphSail.LANG);
return null != datatype
? store.valueFactory.createLiteral(value, store.valueFactory.createURI(datatype))
: null != lang
? store.valueFactory.createLiteral(value, lang)
: store.valueFactory.createLiteral(value);
} else if (kind.equals(GraphSail.BNODE)) {
return store.valueFactory.createBNode(value);
} else {
throw new IllegalStateException("unexpected resource kind: " + kind);
}
}
private Value toSesame(final String s) {
int i;
switch (s.charAt(0)) {
case GraphSail.URI_PREFIX:
return store.valueFactory.createURI(s.substring(2));
case GraphSail.BLANK_NODE_PREFIX:
return store.valueFactory.createBNode(s.substring(2));
case GraphSail.PLAIN_LITERAL_PREFIX:
return store.valueFactory.createLiteral(s.substring(2));
case GraphSail.TYPED_LITERAL_PREFIX:
i = s.indexOf(GraphSail.SEPARATOR, 2);
return store.valueFactory.createLiteral(s.substring(i + 1), store.valueFactory.createURI(s.substring(2, i)));
case GraphSail.LANGUAGE_TAG_LITERAL_PREFIX:
i = s.indexOf(GraphSail.SEPARATOR, 2);
return store.valueFactory.createLiteral(s.substring(i + 1), s.substring(2, i));
case GraphSail.NULL_CONTEXT_PREFIX:
return null;
default:
throw new IllegalStateException();
}
}
}
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