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org.apache.airavata.client.impl.ExecutionManagerImpl Maven / Gradle / Ivy
/*
*
* Licensed to the Apache Software Foundation (ASF) under one
* or more contributor license agreements. See the NOTICE file
* distributed with this work for additional information
* regarding copyright ownership. The ASF licenses this file
* to you under the Apache License, Version 2.0 (the
* "License"); you may not use this file except in compliance
* with the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing,
* software distributed under the License is distributed on an
* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
* KIND, either express or implied. See the License for the
* specific language governing permissions and limitations
* under the License.
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package org.apache.airavata.client.impl;
import java.net.URISyntaxException;
import java.rmi.RemoteException;
import java.util.ArrayList;
import java.util.Calendar;
import java.util.List;
import java.util.UUID;
import javax.xml.stream.XMLStreamException;
import org.apache.airavata.client.AiravataAPIUtils;
import org.apache.airavata.client.AiravataClient;
import org.apache.airavata.client.api.ExecutionManager;
import org.apache.airavata.client.api.ExperimentAdvanceOptions;
import org.apache.airavata.client.api.exception.AiravataAPIInvocationException;
import org.apache.airavata.client.stub.interpretor.NameValue;
import org.apache.airavata.client.stub.interpretor.WorkflowInterpretorStub;
import org.apache.airavata.common.utils.XMLUtil;
import org.apache.airavata.common.workflow.execution.context.WorkflowContextHeaderBuilder;
import org.apache.airavata.registry.api.ExecutionErrors.Source;
import org.apache.airavata.registry.api.workflow.ApplicationJobExecutionError;
import org.apache.airavata.registry.api.workflow.ExecutionError;
import org.apache.airavata.registry.api.workflow.ExperimentExecutionError;
import org.apache.airavata.registry.api.workflow.NodeExecutionError;
import org.apache.airavata.registry.api.workflow.WorkflowExecutionError;
import org.apache.airavata.registry.api.workflow.WorkflowExecutionStatus;
import org.apache.airavata.registry.api.workflow.WorkflowExecutionStatus.State;
import org.apache.airavata.workflow.model.wf.Workflow;
import org.apache.airavata.workflow.model.wf.WorkflowInput;
import org.apache.airavata.ws.monitor.EventData;
import org.apache.airavata.ws.monitor.EventDataListener;
import org.apache.airavata.ws.monitor.EventDataListenerAdapter;
import org.apache.airavata.ws.monitor.EventDataRepository;
import org.apache.airavata.ws.monitor.Monitor;
import org.apache.airavata.ws.monitor.MonitorConfiguration;
import org.apache.airavata.ws.monitor.MonitorUtil.EventType;
import org.apache.axiom.om.OMElement;
import org.apache.axiom.om.impl.llom.util.AXIOMUtil;
import org.apache.axis2.AxisFault;
public class ExecutionManagerImpl implements ExecutionManager {
private AiravataClient client;
public ExecutionManagerImpl() {
}
public ExecutionManagerImpl(AiravataClient client) {
setClient(client);
}
@Override
public String runExperiment(String workflowTemplateId,
List inputs) throws AiravataAPIInvocationException {
ExperimentAdvanceOptions options = createExperimentAdvanceOptions(workflowTemplateId+"_"+Calendar.getInstance().getTime().toString(), getClient().getCurrentUser(), null);
return runExperiment(workflowTemplateId, inputs ,options);
}
@Override
public String runExperiment(String workflow,
List inputs, ExperimentAdvanceOptions options)
throws AiravataAPIInvocationException {
return runExperimentGeneral(extractWorkflow(workflow), inputs, options, null);
}
@Override
public String runExperiment(Workflow workflow, List inputs, ExperimentAdvanceOptions options)
throws AiravataAPIInvocationException {
return runExperimentGeneral(workflow,inputs, options, null).toString();
}
@Override
public ExperimentAdvanceOptions createExperimentAdvanceOptions()
throws AiravataAPIInvocationException {
return new ExperimentAdvanceOptions();
}
@Override
public ExperimentAdvanceOptions createExperimentAdvanceOptions(
String experimentName, String experimentUser,
String experimentMetadata) throws AiravataAPIInvocationException {
ExperimentAdvanceOptions options = createExperimentAdvanceOptions();
options.setExperimentName(experimentName);
options.setExperimentCustomMetadata(experimentMetadata);
options.setExperimentExecutionUser(experimentUser);
return options;
}
@Override
public void waitForExperimentTermination(String experimentId)
throws AiravataAPIInvocationException {
Monitor experimentMonitor = getExperimentMonitor(experimentId, new EventDataListenerAdapter() {
@Override
public void notify(EventDataRepository eventDataRepo,
EventData eventData) {
if (eventData.getType()==EventType.WORKFLOW_TERMINATED){
getMonitor().stopMonitoring();
}
}
});
experimentMonitor.startMonitoring();
try {
WorkflowExecutionStatus workflowInstanceStatus = getClient().getProvenanceManager().getWorkflowInstanceStatus(experimentId, experimentId);
if (workflowInstanceStatus.getExecutionStatus()==State.FINISHED || workflowInstanceStatus.getExecutionStatus()==State.FAILED){
experimentMonitor.stopMonitoring();
return;
}
} catch (AiravataAPIInvocationException e) {
//Workflow may not have started yet. Best to use the monitor to follow the progress
}
experimentMonitor.waitForCompletion();
}
@Override
public Monitor getExperimentMonitor(String experimentId)
throws AiravataAPIInvocationException {
return getExperimentMonitor(experimentId,null);
}
@Override
public Monitor getExperimentMonitor(String experimentId,final EventDataListener listener)
throws AiravataAPIInvocationException {
MonitorConfiguration monitorConfiguration;
try {
monitorConfiguration = new MonitorConfiguration(
getClient().getClientConfiguration().getMessagebrokerURL().toURI(), experimentId,
true, getClient().getClientConfiguration().getMessageboxURL().toURI());
final Monitor monitor = new Monitor(monitorConfiguration);
monitor.printRawMessage(false);
if (listener!=null) {
monitor.getEventDataRepository().registerEventListener(listener);
listener.setExperimentMonitor(monitor);
}
if (!monitor.getExperimentId().equals(">")){
monitor.getEventDataRepository().registerEventListener(new EventDataListenerAdapter() {
@Override
public void notify(EventDataRepository eventDataRepo, EventData eventData) {
if (eventData.getType()==EventType.WORKFLOW_TERMINATED || eventData.getType()==EventType.SENDING_FAULT){
monitor.stopMonitoring();
}
}
});
}
return monitor;
} catch (URISyntaxException e) {
throw new AiravataAPIInvocationException(e);
}
}
@Override
public String runExperiment(String workflow, List inputs,
ExperimentAdvanceOptions options, EventDataListener listener)
throws AiravataAPIInvocationException {
return runExperimentGeneral(extractWorkflow(workflow), inputs, options, listener);
}
public AiravataClient getClient() {
return client;
}
public void setClient(AiravataClient client) {
this.client = client;
}
private String runExperimentGeneral(Workflow workflowObj, List inputs, ExperimentAdvanceOptions options, EventDataListener listener) throws AiravataAPIInvocationException {
try {
List inputValues = new ArrayList();
for (WorkflowInput input : inputs) {
NameValue nameValue = new NameValue();
nameValue.setName(input.getName());
nameValue.setValue(String.valueOf(input.getValue()==null?input.getDefaultValue():input.getValue()));
inputValues.add(nameValue);
}
String workflowString = XMLUtil.xmlElementToString(workflowObj.toXML());
// List ports = getWSComponentPortInputs(workflowObj);
// for (WorkflowInput input : inputs) {
// WSComponentPort port = getWSComponentPort(input.getName(),
// ports);
// if (port != null) {
// port.setValue(input.getValue());
// }
// }
// for (WSComponentPort port : ports) {
// NameValue nameValue = new NameValue();
// nameValue.setName(port.getName());
// if (port.getValue() == null) {
// nameValue.setValue(port.getDefaultValue());
// } else {
// nameValue.setValue(port.getValue().toString());
// }
// inputValues.add(nameValue);
// }
String experimentID=options.getCustomExperimentId();
String workflowTemplateName = workflowObj.getName();
if (experimentID == null || experimentID.isEmpty()) {
experimentID = workflowTemplateName + "_" + UUID.randomUUID();
}
getClient().getProvenanceManager().setWorkflowInstanceTemplateName(experimentID,workflowTemplateName);
//TODO - fix user passing
String submissionUser = getClient().getUserManager().getAiravataUser();
String executionUser=options.getExperimentExecutionUser();
if (executionUser==null){
executionUser=submissionUser;
}
WorkflowContextHeaderBuilder builder = AiravataAPIUtils.createWorkflowContextHeaderBuilder(options, executionUser, submissionUser);
runPreWorkflowExecutionTasks(experimentID, executionUser, options.getExperimentMetadata(), options.getExperimentName());
NameValue[] inputVals = inputValues.toArray(new NameValue[] {});
if (listener!=null){
getExperimentMonitor(experimentID, listener).startMonitoring();
}
launchWorkflow(experimentID, workflowString, inputVals, builder);
return experimentID;
// } catch (GraphException e) {
// throw new AiravataAPIInvocationException(e);
// } catch (ComponentException e) {
// throw new AiravataAPIInvocationException(e);
} catch (Exception e) {
throw new AiravataAPIInvocationException("Error working with Airavata Registry: " + e.getLocalizedMessage(), e);
}
}
private Workflow extractWorkflow(String workflowName) throws AiravataAPIInvocationException {
Workflow workflowObj = null;
//FIXME - There should be a better way to figure-out if the passed string is a name or an xml
if(!workflowName.contains("http://airavata.apache.org/xbaya/xwf")){//(getClient().getWorkflowManager().isWorkflowExists(workflowName)) {
workflowObj = getClient().getWorkflowManager().getWorkflow(workflowName);
}else {
try{
workflowObj = getClient().getWorkflowManager().getWorkflowFromString(workflowName);
}catch (AiravataAPIInvocationException e){
getClient().getWorkflowManager().getWorkflow(workflowName);
}
}
return workflowObj;
}
// private List getWSComponentPortInputs(Workflow workflow)
// throws GraphException, ComponentException {
// workflow.createScript();
// List inputs = workflow.getInputs();
// return inputs;
// }
//
// private WSComponentPort getWSComponentPort(String name,
// List ports) {
// for (WSComponentPort port : ports) {
// if (port.getName().equals(name)) {
// return port;
// }
// }
// return null;
// }
private void launchWorkflow(String experimentId, String workflowGraph, NameValue[] inputs,
WorkflowContextHeaderBuilder builder) throws AiravataAPIInvocationException {
try {
builder.getWorkflowMonitoringContext().setExperimentId(experimentId);
WorkflowInterpretorStub stub = new WorkflowInterpretorStub(getClient().getAiravataManager().getWorkflowInterpreterServiceURL().toString());
OMElement wchOMElement = AXIOMUtil.stringToOM(XMLUtil.xmlElementToString(builder
.getXml()));
wchOMElement.addAttribute("submissionUser", builder.getSubmissionUser(), wchOMElement.getNamespace());
stub._getServiceClient().addHeader(
wchOMElement);
stub.launchWorkflow(workflowGraph, experimentId, inputs);
} catch (AxisFault e) {
e.printStackTrace();
} catch (XMLStreamException e) {
e.printStackTrace();
} catch (RemoteException e) {
e.printStackTrace();
}
}
private void runPreWorkflowExecutionTasks(String experimentId, String user,
String metadata, String experimentName) throws AiravataAPIInvocationException {
if (user != null) {
getClient().getProvenanceManager().setExperimentUser(experimentId, user);
}
if (metadata != null) {
getClient().getProvenanceManager().setExperimentMetadata(experimentId, metadata);
}
if (experimentName == null) {
experimentName = experimentId;
}
getClient().getProvenanceManager().setExperimentName(experimentId, experimentName);
}
public static void main(String[] args) {
ExecutionManagerImpl a = new ExecutionManagerImpl(null);
try {
ExperimentAdvanceOptions b = a.createExperimentAdvanceOptions();
b.getCustomWorkflowOutputDataSettings().addNewOutputDataSettings("la", "di", "da", false);
WorkflowContextHeaderBuilder c = AiravataAPIUtils.createWorkflowContextHeaderBuilder(b, "sheeeeeeeeeeee","meeee");
System.out.println(XMLUtil.xmlElementToString(c.getXml()));
} catch (AiravataAPIInvocationException e) {
e.printStackTrace();
}
}
@Override
public List getExperimentExecutionErrors(
String experimentId) throws AiravataAPIInvocationException {
try {
return getClient().getRegistryClient().getExperimentExecutionErrors(experimentId);
} catch (Exception e) {
throw new AiravataAPIInvocationException(e);
}
}
@Override
public List getWorkflowExecutionErrors(
String experimentId, String workflowInstanceId)
throws AiravataAPIInvocationException {
try {
return getClient().getRegistryClient().getWorkflowExecutionErrors(experimentId,
workflowInstanceId);
} catch (Exception e) {
throw new AiravataAPIInvocationException(e);
}
}
@Override
public List getNodeExecutionErrors(String experimentId,
String workflowInstanceId, String nodeId)
throws AiravataAPIInvocationException {
try {
return getClient().getRegistryClient().getNodeExecutionErrors(experimentId,
workflowInstanceId, nodeId);
} catch (Exception e) {
throw new AiravataAPIInvocationException(e);
}
}
@Override
public List getApplicationJobErrors(String experimentId,
String workflowInstanceId, String nodeId, String gfacJobId)
throws AiravataAPIInvocationException {
try {
return getClient().getRegistryClient().getApplicationJobErrors(experimentId,
workflowInstanceId, nodeId, gfacJobId);
} catch (Exception e) {
throw new AiravataAPIInvocationException(e);
}
}
@Override
public List getApplicationJobErrors(String gfacJobId)
throws AiravataAPIInvocationException {
try {
return getClient().getRegistryClient().getApplicationJobErrors(gfacJobId);
} catch (Exception e) {
throw new AiravataAPIInvocationException(e);
}
}
@Override
public List getExecutionErrors(String experimentId,
String workflowInstanceId, String nodeId, String gfacJobId,
Source... filterBy) throws AiravataAPIInvocationException {
try {
return getClient().getRegistryClient().getExecutionErrors(experimentId,
workflowInstanceId, nodeId, gfacJobId, filterBy);
} catch (Exception e) {
throw new AiravataAPIInvocationException(e);
}
}
@Override
public int addExperimentError(ExperimentExecutionError error)
throws AiravataAPIInvocationException {
try {
return getClient().getRegistryClient().addExperimentError(error);
} catch (Exception e) {
throw new AiravataAPIInvocationException(e);
}
}
@Override
public int addWorkflowExecutionError(WorkflowExecutionError error)
throws AiravataAPIInvocationException {
try {
return getClient().getRegistryClient().addWorkflowExecutionError(error);
} catch (Exception e) {
throw new AiravataAPIInvocationException(e);
}
}
@Override
public int addNodeExecutionError(NodeExecutionError error)
throws AiravataAPIInvocationException {
try {
return getClient().getRegistryClient().addNodeExecutionError(error);
} catch (Exception e) {
throw new AiravataAPIInvocationException(e);
}
}
@Override
public int addApplicationJobExecutionError(ApplicationJobExecutionError error)
throws AiravataAPIInvocationException {
try {
return getClient().getRegistryClient().addApplicationJobExecutionError(error);
} catch (Exception e) {
throw new AiravataAPIInvocationException(e);
}
}
}
