org.apache.airavata.client.impl.ExecutionManagerThriftImpl Maven / Gradle / Ivy
Go to download
Show more of this group Show more artifacts with this name
Show all versions of airavata-client-api Show documentation
Show all versions of airavata-client-api Show documentation
Client API for accessing Airavata Services
/*
*
* Licensed to the Apache Software Foundation (ASF) under one
* or more contributor license agreements. See the NOTICE file
* distributed with this work for additional information
* regarding copyright ownership. The ASF licenses this file
* to you under the Apache License, Version 2.0 (the
* "License"); you may not use this file except in compliance
* with the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing,
* software distributed under the License is distributed on an
* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
* KIND, either express or implied. See the License for the
* specific language governing permissions and limitations
* under the License.
*
*/
package org.apache.airavata.client.impl;
import org.apache.airavata.client.AiravataClient;
import org.apache.airavata.client.api.*;
import org.apache.airavata.client.api.ExperimentAdvanceOptions;
import org.apache.airavata.client.api.HPCSettings;
import org.apache.airavata.client.api.HostSchedulingSettings;
import org.apache.airavata.client.api.NodeSettings;
import org.apache.airavata.client.api.OutputDataSettings;
import org.apache.airavata.client.api.SecuritySettings;
import org.apache.airavata.client.api.WorkflowOutputDataSettings;
import org.apache.airavata.client.api.WorkflowSchedulingSettings;
import org.apache.airavata.client.api.exception.AiravataAPIInvocationException;
import org.apache.airavata.client.tools.NameValuePairType;
import org.apache.airavata.registry.api.ExecutionErrors;
import org.apache.airavata.registry.api.workflow.*;
import org.apache.airavata.workflow.model.wf.Workflow;
import org.apache.airavata.workflow.model.wf.WorkflowInput;
import org.apache.airavata.ws.monitor.*;
import org.apache.airavata.interpreter.service.client.ExecutionClient;
import org.apache.thrift.TException;
import java.net.URISyntaxException;
import java.util.*;
public class ExecutionManagerThriftImpl implements ExecutionManager {
private AiravataClient client;
public ExecutionManagerThriftImpl() {
}
public ExecutionManagerThriftImpl(AiravataClient client) {
setClient(client);
}
public AiravataClient getClient() {
return client;
}
public void setClient(AiravataClient client) {
this.client = client;
}
public String runExperiment(String workflowTemplateId, List inputs) throws AiravataAPIInvocationException {
ExperimentAdvanceOptions options = createExperimentAdvanceOptions(workflowTemplateId + "_" + Calendar.getInstance().getTime().toString(), getClient().getCurrentUser(), null);
return runExperimentGeneral(workflowTemplateId, inputs, options, null);
}
public String runExperiment(String workflow, List inputs, ExperimentAdvanceOptions options) throws AiravataAPIInvocationException {
return runExperimentGeneral(workflow, inputs, options, null);
}
public String runExperiment(String workflow, List inputs, ExperimentAdvanceOptions options, EventDataListener listener) throws AiravataAPIInvocationException {
return runExperimentGeneral(workflow, inputs, options, listener);
}
public String runExperiment(Workflow workflow, List inputs, ExperimentAdvanceOptions options) throws AiravataAPIInvocationException {
return runExperimentGeneral(workflow.getName(), inputs, options, null);
}
private String runExperimentGeneral(String wfname, List inputs, ExperimentAdvanceOptions options, EventDataListener listener) throws AiravataAPIInvocationException {
Workflow workflowObj = null;
try {
// workflowObj = extractWorkflow(wfname);
// String experimentID = options.getCustomExperimentId();
// String workflowTemplateName = workflowObj.getName();
// if (experimentID == null || experimentID.isEmpty()) {
// experimentID = workflowTemplateName + "_" + UUID.randomUUID();
// }
// options.setCustomExperimentId(experimentID);
// getClient().getProvenanceManager().setWorkflowInstanceTemplateName(experimentID, workflowTemplateName);
//
// String submissionUser = getClient().getUserManager().getAiravataUser();
// String executionUser=options.getExperimentExecutionUser();
// if (executionUser==null){
// executionUser=submissionUser;
// }
// options.setExperimentExecutionUser(executionUser);
// runPreWorkflowExecutionTasks(experimentID, executionUser, options.getExperimentMetadata(), options.getExperimentName());
//
// String workflowContent = extractWorkflowContent(wfname);
Map workflowInputs = new HashMap();
for (WorkflowInput workflowInput : inputs){
String name = workflowInput.getName();
String value = (String)workflowInput.getValue();
workflowInputs.put(name, value);
}
// if (listener!=null){
// getExperimentMonitor(experimentID, listener).startMonitoring();
// }
org.apache.airavata.experiment.execution.ExperimentAdvanceOptions experimentAdvanceOptions = generateAdvancedOptions(options);
return getExecutionClient().runExperiment(wfname, workflowInputs, experimentAdvanceOptions);
} catch (TException e) {
throw new AiravataAPIInvocationException("Error occured while running the workflow", e);
}
}
private void runPreWorkflowExecutionTasks(String experimentId, String user,
String metadata, String experimentName) throws AiravataAPIInvocationException {
if (user != null) {
getClient().getProvenanceManager().setExperimentUser(experimentId, user);
}
if (metadata != null) {
getClient().getProvenanceManager().setExperimentMetadata(experimentId, metadata);
}
if (experimentName == null) {
experimentName = experimentId;
}
getClient().getProvenanceManager().setExperimentName(experimentId, experimentName);
}
public Monitor getExperimentMonitor(String experimentId) throws AiravataAPIInvocationException {
return getExperimentMonitor(experimentId,null);
}
public Monitor getExperimentMonitor(String experimentId, EventDataListener listener) throws AiravataAPIInvocationException {
MonitorConfiguration monitorConfiguration;
try {
monitorConfiguration = new MonitorConfiguration(
getClient().getClientConfiguration().getMessagebrokerURL().toURI(), experimentId,
true, getClient().getClientConfiguration().getMessageboxURL().toURI());
final Monitor monitor = new Monitor(monitorConfiguration);
monitor.printRawMessage(false);
if (listener!=null) {
monitor.getEventDataRepository().registerEventListener(listener);
listener.setExperimentMonitor(monitor);
}
if (!monitor.getExperimentId().equals(">")){
monitor.getEventDataRepository().registerEventListener(new EventDataListenerAdapter() {
public void notify(EventDataRepository eventDataRepo, EventData eventData) {
if (eventData.getType()== MonitorUtil.EventType.WORKFLOW_TERMINATED || eventData.getType()== MonitorUtil.EventType.SENDING_FAULT){
monitor.stopMonitoring();
}
}
});
}
return monitor;
} catch (URISyntaxException e) {
throw new AiravataAPIInvocationException(e);
}
}
public ExperimentAdvanceOptions createExperimentAdvanceOptions() throws AiravataAPIInvocationException {
return new ExperimentAdvanceOptions();
}
public ExperimentAdvanceOptions createExperimentAdvanceOptions(String experimentName, String experimentUser, String experimentMetadata) throws AiravataAPIInvocationException {
ExperimentAdvanceOptions options = createExperimentAdvanceOptions();
options.setExperimentName(experimentName);
options.setExperimentCustomMetadata(experimentMetadata);
options.setExperimentExecutionUser(experimentUser);
return options;
}
public void waitForExperimentTermination(String experimentId) throws AiravataAPIInvocationException {
Monitor experimentMonitor = getExperimentMonitor(experimentId, new EventDataListenerAdapter() {
public void notify(EventDataRepository eventDataRepo,
EventData eventData) {
if (eventData.getType()== MonitorUtil.EventType.WORKFLOW_TERMINATED){
getMonitor().stopMonitoring();
}
}
});
experimentMonitor.startMonitoring();
try {
WorkflowExecutionStatus workflowInstanceStatus = getClient().getProvenanceManager().getWorkflowInstanceStatus(experimentId, experimentId);
if (workflowInstanceStatus.getExecutionStatus()== WorkflowExecutionStatus.State.FINISHED || workflowInstanceStatus.getExecutionStatus()== WorkflowExecutionStatus.State.FAILED){
experimentMonitor.stopMonitoring();
return;
}
} catch (AiravataAPIInvocationException e) {
//Workflow may not have started yet. Best to use the monitor to follow the progress
}
experimentMonitor.waitForCompletion();
}
public List getExperimentExecutionErrors(String experimentId) throws AiravataAPIInvocationException {
try {
return getClient().getRegistryClient().getExperimentExecutionErrors(experimentId);
} catch (Exception e) {
throw new AiravataAPIInvocationException(e);
}
}
public List getWorkflowExecutionErrors(String experimentId, String workflowInstanceId) throws AiravataAPIInvocationException {
try {
return getClient().getRegistryClient().getWorkflowExecutionErrors(experimentId,
workflowInstanceId);
} catch (Exception e) {
throw new AiravataAPIInvocationException(e);
}
}
public List getNodeExecutionErrors(String experimentId, String workflowInstanceId, String nodeId) throws AiravataAPIInvocationException {
try {
return getClient().getRegistryClient().getNodeExecutionErrors(experimentId,
workflowInstanceId, nodeId);
} catch (Exception e) {
throw new AiravataAPIInvocationException(e);
}
}
public List getApplicationJobErrors(String experimentId, String workflowInstanceId, String nodeId, String gfacJobId) throws AiravataAPIInvocationException {
try {
return getClient().getRegistryClient().getApplicationJobErrors(experimentId,
workflowInstanceId, nodeId, gfacJobId);
} catch (Exception e) {
throw new AiravataAPIInvocationException(e);
}
}
public List getApplicationJobErrors(String gfacJobId) throws AiravataAPIInvocationException {
try {
return getClient().getRegistryClient().getApplicationJobErrors(gfacJobId);
} catch (Exception e) {
throw new AiravataAPIInvocationException(e);
}
}
public List getExecutionErrors(String experimentId, String workflowInstanceId, String nodeId, String gfacJobId, ExecutionErrors.Source... filterBy) throws AiravataAPIInvocationException {
try {
return getClient().getRegistryClient().getExecutionErrors(experimentId,
workflowInstanceId, nodeId, gfacJobId, filterBy);
} catch (Exception e) {
throw new AiravataAPIInvocationException(e);
}
}
public int addExperimentError(ExperimentExecutionError error) throws AiravataAPIInvocationException {
try {
return getClient().getRegistryClient().addExperimentError(error);
} catch (Exception e) {
throw new AiravataAPIInvocationException(e);
}
}
public int addWorkflowExecutionError(WorkflowExecutionError error) throws AiravataAPIInvocationException {
try {
return getClient().getRegistryClient().addWorkflowExecutionError(error);
} catch (Exception e) {
throw new AiravataAPIInvocationException(e);
}
}
public int addNodeExecutionError(NodeExecutionError error) throws AiravataAPIInvocationException {
try {
return getClient().getRegistryClient().addNodeExecutionError(error);
} catch (Exception e) {
throw new AiravataAPIInvocationException(e);
}
}
public int addApplicationJobExecutionError(ApplicationJobExecutionError error) throws AiravataAPIInvocationException {
try {
return getClient().getRegistryClient().addApplicationJobExecutionError(error);
} catch (Exception e) {
throw new AiravataAPIInvocationException(e);
}
}
public org.apache.airavata.experiment.execution.InterpreterService.Client getExecutionClient (){
ExecutionClient executionClient = new ExecutionClient();
return executionClient.getInterpreterServiceClient();
}
private String extractWorkflowContent(String workflowName) throws AiravataAPIInvocationException {
if(workflowName.contains("http://airavata.apache.org/xbaya/xwf")){//(getClient().getWorkflowManager().isWorkflowExists(workflowName)) {
return workflowName;
}else {
return getClient().getWorkflowManager().getWorkflowAsString(workflowName);
}
}
private Workflow extractWorkflow(String workflowName) throws AiravataAPIInvocationException {
Workflow workflowObj = null;
//FIXME - There should be a better way to figure-out if the passed string is a name or an xml
if(!workflowName.contains("http://airavata.apache.org/xbaya/xwf")){//(getClient().getWorkflowManager().isWorkflowExists(workflowName)) {
workflowObj = getClient().getWorkflowManager().getWorkflow(workflowName);
}else {
try{
workflowObj = getClient().getWorkflowManager().getWorkflowFromString(workflowName);
}catch (AiravataAPIInvocationException e){
getClient().getWorkflowManager().getWorkflow(workflowName);
}
}
return workflowObj;
}
private org.apache.airavata.experiment.execution.ExperimentAdvanceOptions generateAdvancedOptions(org.apache.airavata.client.api.ExperimentAdvanceOptions exAdOpt){
try {
org.apache.airavata.experiment.execution.ExperimentAdvanceOptions advanceOptions = new org.apache.airavata.experiment.execution.ExperimentAdvanceOptions();
advanceOptions.setExperimentName(exAdOpt.getExperimentName());
advanceOptions.setCustomExperimentId(exAdOpt.getCustomExperimentId());
advanceOptions.setExecutionUser(exAdOpt.getExperimentExecutionUser());
advanceOptions.setMetadata(exAdOpt.getExperimentMetadata());
SecuritySettings customSecuritySettings = exAdOpt.getCustomSecuritySettings();
if (customSecuritySettings != null){
advanceOptions.setSecuritySettings(generateSecuritySettingsObj(customSecuritySettings));
}
WorkflowOutputDataSettings outputDataSettings = exAdOpt.getCustomWorkflowOutputDataSettings();
List dataSettingsList = new ArrayList();
if (outputDataSettings != null){
OutputDataSettings[] outputDataSettingsList = outputDataSettings.getOutputDataSettingsList();
for (OutputDataSettings opds : outputDataSettingsList){
org.apache.airavata.experiment.execution.OutputDataSettings dataSettings = generateOutputDataObject(opds);
dataSettingsList.add(dataSettings);
}
org.apache.airavata.experiment.execution.WorkflowOutputDataSettings wfOpDSettings = new org.apache.airavata.experiment.execution.WorkflowOutputDataSettings();
wfOpDSettings.setOutputDataSettingsList(dataSettingsList);
advanceOptions.setWorkflowOutputDataSettings(wfOpDSettings);
}
WorkflowSchedulingSettings schedulingSettings = exAdOpt.getCustomWorkflowSchedulingSettings();
if (schedulingSettings != null){
org.apache.airavata.experiment.execution.WorkflowSchedulingSettings settings = generateShedulingSettingsObject(schedulingSettings);
advanceOptions.setWorkflowSchedulingSettings(settings);
}
return advanceOptions;
} catch (AiravataAPIInvocationException e) {
e.printStackTrace();
}
return null;
}
private org.apache.airavata.experiment.execution.SecuritySettings generateSecuritySettingsObj(org.apache.airavata.client.api.SecuritySettings secSettings) {
try {
org.apache.airavata.experiment.execution.SecuritySettings settings = new org.apache.airavata.experiment.execution.SecuritySettings();
org.apache.airavata.experiment.execution.AmazonWebServicesSettings amWSSettings = new org.apache.airavata.experiment.execution.AmazonWebServicesSettings();
org.apache.airavata.client.api.AmazonWebServicesSettings amazonWSSettings = secSettings.getAmazonWSSettings();
if (amazonWSSettings != null){
amWSSettings.setAccessKey(amazonWSSettings.getSecretAccessKey());
amWSSettings.setAmiID(amazonWSSettings.getAMIId());
amWSSettings.setInstanceID(amazonWSSettings.getInstanceId());
amWSSettings.setSecretAccessKey(amazonWSSettings.getSecretAccessKey());
amWSSettings.setUsername(amazonWSSettings.getUsername());
settings.setAmazonWSSettings(amWSSettings);
}
org.apache.airavata.experiment.execution.CredentialStoreSecuritySettings credSettings = new org.apache.airavata.experiment.execution.CredentialStoreSecuritySettings();
org.apache.airavata.client.api.CredentialStoreSecuritySettings credStoreSecSettings = secSettings.getCredentialStoreSecuritySettings();
if (credStoreSecSettings != null){
credSettings.setGatewayID(credStoreSecSettings.getGatewayId());
credSettings.setPortalUser(credStoreSecSettings.getPortalUser());
credSettings.setTokenId(credStoreSecSettings.getTokenId());
settings.setCredentialStoreSettings(credSettings);
}
// org.apache.airavata.experiment.execution.MyProxyRepositorySettings myProxySettings = new org.apache.airavata.experiment.execution.MyProxyRepositorySettings();
// org.apache.airavata.client.api.GridMyProxyRepositorySettings proxyRepositorySettings = secSettings.getGridMyProxyRepositorySettings();
// if (proxyRepositorySettings != null){
// myProxySettings.setLifetime(proxyRepositorySettings.getLifeTime());
// myProxySettings.setMyproxyServer(proxyRepositorySettings.getMyProxyServer());
// myProxySettings.setPassword(proxyRepositorySettings.getPassword());
// myProxySettings.setUserName(proxyRepositorySettings.getUsername());
// settings.setMyproxySettings(myProxySettings);
// }
//
// org.apache.airavata.experiment.execution.SSHAuthenticationSettings authSettings = new org.apache.airavata.experiment.execution.SSHAuthenticationSettings();
// org.apache.airavata.client.api.SSHAuthenticationSettings sshAuthenticationSettings = secSettings.getSSHAuthenticationSettings();
// if (sshAuthenticationSettings != null){
// authSettings.setAccessKeyID(sshAuthenticationSettings.getAccessKeyId());
// authSettings.setSecretAccessKey(sshAuthenticationSettings.getSecretAccessKey());
// settings.setSshAuthSettings(authSettings);
// }
return settings;
} catch (AiravataAPIInvocationException e) {
e.printStackTrace();
}
return null;
}
private org.apache.airavata.experiment.execution.OutputDataSettings generateOutputDataObject(OutputDataSettings opDataSettings){
org.apache.airavata.experiment.execution.OutputDataSettings dataSettings = new org.apache.airavata.experiment.execution.OutputDataSettings();
dataSettings.setDataRegURL(opDataSettings.getDataRegistryUrl());
dataSettings.setIsdataPersisted(opDataSettings.isDataPersistent());
dataSettings.setNodeID(opDataSettings.getNodeId());
dataSettings.setOutputdataDir(opDataSettings.getOutputDataDirectory());
return dataSettings;
}
private org.apache.airavata.experiment.execution.WorkflowSchedulingSettings generateShedulingSettingsObject (WorkflowSchedulingSettings wfschSettings){
org.apache.airavata.experiment.execution.WorkflowSchedulingSettings schedulingSettings = new org.apache.airavata.experiment.execution.WorkflowSchedulingSettings();
NodeSettings[] list = wfschSettings.getNodeSettingsList();
List nodes = new ArrayList();
if (list != null){
for (NodeSettings ns : list){
org.apache.airavata.experiment.execution.NodeSettings nodeSettings = generateNodeSettingsObject(ns);
nodes.add(nodeSettings);
}
}
schedulingSettings.setNodeSettingsList(nodes);
return schedulingSettings;
}
private org.apache.airavata.experiment.execution.NodeSettings generateNodeSettingsObject (NodeSettings settings){
org.apache.airavata.experiment.execution.NodeSettings nsettings = new org.apache.airavata.experiment.execution.NodeSettings();
nsettings.setNodeId(settings.getNodeId());
nsettings.setServiceId(settings.getServiceId());
nsettings.setHostSchedulingSettings(generateHostSchSettings(settings.getHostSettings()));
nsettings.setHpcSettings(generateHPCSettingsObject(settings.getHPCSettings()));
List nameValuePair = settings.getNameValuePair();
List typeList = new ArrayList();
if (nameValuePair != null){
for (NameValuePairType nvPair : nameValuePair){
org.apache.airavata.experiment.execution.NameValuePairType type = generateNVPairObject(nvPair);
typeList.add(type);
}
}
nsettings.setNameValuePairList(typeList);
return nsettings;
}
private org.apache.airavata.experiment.execution.HostSchedulingSettings generateHostSchSettings (HostSchedulingSettings settings){
org.apache.airavata.experiment.execution.HostSchedulingSettings hscheduleSettings = new org.apache.airavata.experiment.execution.HostSchedulingSettings();
hscheduleSettings.setGatekeeperEPR(settings.getGatekeeperEPR());
hscheduleSettings.setHostID(settings.getHostId());
hscheduleSettings.setIsWSGramPreferred(settings.isWSGRAMPreffered());
return hscheduleSettings;
}
private org.apache.airavata.experiment.execution.HPCSettings generateHPCSettingsObject (HPCSettings settings){
org.apache.airavata.experiment.execution.HPCSettings hsettings = new org.apache.airavata.experiment.execution.HPCSettings();
hsettings.setCpuCount(settings.getCPUCount());
hsettings.setJobManager(settings.getJobManager());
hsettings.setMaxWalltime(settings.getMaxWallTime());
hsettings.setNodeCount(settings.getNodeCount());
hsettings.setQueueName(settings.getQueueName());
return hsettings;
}
private org.apache.airavata.experiment.execution.NameValuePairType generateNVPairObject (org.apache.airavata.client.tools.NameValuePairType settings){
org.apache.airavata.experiment.execution.NameValuePairType nvType = new org.apache.airavata.experiment.execution.NameValuePairType();
nvType.setName(settings.getName());
nvType.setDescription(settings.getDescription());
nvType.setValue(settings.getValue());
return nvType;
}
}
© 2015 - 2025 Weber Informatics LLC | Privacy Policy