org.apache.airavata.client.tools.DocumentCreator Maven / Gradle / Ivy
/*
*
* Licensed to the Apache Software Foundation (ASF) under one
* or more contributor license agreements. See the NOTICE file
* distributed with this work for additional information
* regarding copyright ownership. The ASF licenses this file
* to you under the Apache License, Version 2.0 (the
* "License"); you may not use this file except in compliance
* with the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing,
* software distributed under the License is distributed on an
* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
* KIND, either express or implied. See the License for the
* specific language governing permissions and limitations
* under the License.
*
*/
package org.apache.airavata.client.tools;
import java.io.File;
import java.util.ArrayList;
import java.util.Date;
import java.util.List;
import java.util.UUID;
import org.apache.airavata.client.api.AiravataAPI;
import org.apache.airavata.client.api.exception.AiravataAPIInvocationException;
import org.apache.airavata.commons.gfac.type.ApplicationDescription;
import org.apache.airavata.commons.gfac.type.HostDescription;
import org.apache.airavata.commons.gfac.type.ServiceDescription;
import org.apache.airavata.schemas.gfac.*;
public class DocumentCreator {
private AiravataAPI airavataAPI = null;
private String trestleshpcHostAddress = "trestles.sdsc.edu";
private String lonestarHostAddress = "lonestar.tacc.utexas.edu";
private String stampedeHostAddress = "stampede.tacc.xsede.org";
private String gridftpAddress = "gsiftp://trestles-dm1.sdsc.edu:2811";
private String gramAddress = "trestles-login1.sdsc.edu:2119/jobmanager-pbstest2";
private String bigRed2HostAddress = "bigred2.uits.iu.edu";
public DocumentCreator(AiravataAPI airavataAPI) {
this.airavataAPI = airavataAPI;
}
public void createLocalHostDocs() {
HostDescription descriptor = new HostDescription();
descriptor.getType().setHostName("localhost");
descriptor.getType().setHostAddress("127.0.0.1");
try {
airavataAPI.getApplicationManager().saveHostDescription(descriptor);
} catch (AiravataAPIInvocationException e) {
e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
}
String serviceName = "SimpleEcho0";
ServiceDescription serviceDescription = new ServiceDescription();
List inputParameters = new ArrayList();
List outputParameters = new ArrayList();
serviceDescription.getType().setName(serviceName);
serviceDescription.getType().setDescription("Echo service");
// Creating input parameters
InputParameterType parameter = InputParameterType.Factory.newInstance();
parameter.setParameterName("echo_input");
parameter.setParameterDescription("echo input");
ParameterType parameterType = parameter.addNewParameterType();
parameterType.setType(DataType.STRING);
parameterType.setName("String");
inputParameters.add(parameter);
// Creating output parameters
OutputParameterType outputParameter = OutputParameterType.Factory.newInstance();
outputParameter.setParameterName("echo_output");
outputParameter.setParameterDescription("Echo output");
ParameterType outputParaType = outputParameter.addNewParameterType();
outputParaType.setType(DataType.STRING);
outputParaType.setName("String");
outputParameters.add(outputParameter);
// Setting input and output parameters to serviceDescriptor
serviceDescription.getType().setInputParametersArray(inputParameters.toArray(new InputParameterType[]{}));
serviceDescription.getType().setOutputParametersArray(outputParameters.toArray(new OutputParameterType[]{}));
try {
airavataAPI.getApplicationManager().saveServiceDescription(serviceDescription);
} catch (AiravataAPIInvocationException e) {
e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
}
ApplicationDescription applicationDeploymentDescription = new ApplicationDescription();
ApplicationDeploymentDescriptionType applicationDeploymentDescriptionType = applicationDeploymentDescription
.getType();
applicationDeploymentDescriptionType.addNewApplicationName().setStringValue("EchoApplication");
applicationDeploymentDescriptionType.setExecutableLocation("/bin/echo");
applicationDeploymentDescriptionType.setScratchWorkingDirectory("/tmp");
try {
airavataAPI.getApplicationManager().saveApplicationDescription(serviceName, "localhost", applicationDeploymentDescription);
} catch (AiravataAPIInvocationException e) {
e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
}
}
public void createSSHHostDocs() {
HostDescription descriptor = new HostDescription(SSHHostType.type);
descriptor.getType().setHostName("gw111.iu.xsede.org");
descriptor.getType().setHostAddress("gw111.iu.xsede.org");
try {
airavataAPI.getApplicationManager().saveHostDescription(descriptor);
} catch (AiravataAPIInvocationException e) {
e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
}
String serviceName = "SSHEcho1";
ServiceDescription serviceDescription = new ServiceDescription();
List inputParameters = new ArrayList();
List outputParameters = new ArrayList();
serviceDescription.getType().setName(serviceName);
serviceDescription.getType().setDescription("Echo service");
// Creating input parameters
InputParameterType parameter = InputParameterType.Factory.newInstance();
parameter.setParameterName("echo_input");
parameter.setParameterDescription("echo input");
ParameterType parameterType = parameter.addNewParameterType();
parameterType.setType(DataType.STRING);
parameterType.setName("String");
inputParameters.add(parameter);
// Creating output parameters
OutputParameterType outputParameter = OutputParameterType.Factory.newInstance();
outputParameter.setParameterName("echo_output");
outputParameter.setParameterDescription("Echo output");
ParameterType outputParaType = outputParameter.addNewParameterType();
outputParaType.setType(DataType.STRING);
outputParaType.setName("String");
outputParameters.add(outputParameter);
// Setting input and output parameters to serviceDescriptor
serviceDescription.getType().setInputParametersArray(inputParameters.toArray(new InputParameterType[]{}));
serviceDescription.getType().setOutputParametersArray(outputParameters.toArray(new OutputParameterType[]{}));
try {
airavataAPI.getApplicationManager().saveServiceDescription(serviceDescription);
} catch (AiravataAPIInvocationException e) {
e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
}
ApplicationDescription applicationDeploymentDescription = new ApplicationDescription();
ApplicationDeploymentDescriptionType applicationDeploymentDescriptionType = applicationDeploymentDescription
.getType();
applicationDeploymentDescriptionType.addNewApplicationName().setStringValue("SSHEchoApplication");
applicationDeploymentDescriptionType.setExecutableLocation("/bin/echo");
applicationDeploymentDescriptionType.setScratchWorkingDirectory("/tmp");
try {
airavataAPI.getApplicationManager().saveApplicationDescription(serviceName, "gw111.iu.xsede.org", applicationDeploymentDescription);
} catch (AiravataAPIInvocationException e) {
e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
}
}
public void createGramDocs() {
/*
creating host descriptor for gram
*/
HostDescription host = new HostDescription(GlobusHostType.type);
host.getType().setHostAddress(trestleshpcHostAddress);
host.getType().setHostName(trestleshpcHostAddress);
((GlobusHostType) host.getType()).setGlobusGateKeeperEndPointArray(new String[]{gramAddress});
((GlobusHostType) host.getType()).setGridFTPEndPointArray(new String[]{gridftpAddress});
try {
airavataAPI.getApplicationManager().saveHostDescription(host);
} catch (AiravataAPIInvocationException e) {
e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
}
/*
* Service Description creation and saving
*/
String serviceName = "SimpleEcho1";
ServiceDescription serv = new ServiceDescription();
serv.getType().setName(serviceName);
List inputList = new ArrayList();
List outputList = new ArrayList();
InputParameterType input = InputParameterType.Factory.newInstance();
input.setParameterName("echo_input");
ParameterType parameterType = input.addNewParameterType();
parameterType.setType(DataType.STRING);
parameterType.setName("String");
OutputParameterType output = OutputParameterType.Factory.newInstance();
output.setParameterName("echo_output");
ParameterType parameterType1 = output.addNewParameterType();
parameterType1.setType(DataType.STRING);
parameterType1.setName("String");
inputList.add(input);
outputList.add(output);
InputParameterType[] inputParamList = inputList.toArray(new InputParameterType[inputList.size()]);
OutputParameterType[] outputParamList = outputList.toArray(new OutputParameterType[outputList.size()]);
serv.getType().setInputParametersArray(inputParamList);
serv.getType().setOutputParametersArray(outputParamList);
try {
airavataAPI.getApplicationManager().saveServiceDescription(serv);
} catch (AiravataAPIInvocationException e) {
e.printStackTrace();
}
/*
Application descriptor creation and saving
*/
ApplicationDescription appDesc = new ApplicationDescription(HpcApplicationDeploymentType.type);
HpcApplicationDeploymentType app = (HpcApplicationDeploymentType) appDesc.getType();
ApplicationDeploymentDescriptionType.ApplicationName name = ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
name.setStringValue("EchoLocal");
app.setApplicationName(name);
ProjectAccountType projectAccountType = app.addNewProjectAccount();
projectAccountType.setProjectAccountNumber("sds128");
QueueType queueType = app.addNewQueue();
queueType.setQueueName("normal");
app.setCpuCount(1);
app.setJobType(JobTypeType.SERIAL);
app.setNodeCount(1);
app.setProcessorsPerNode(1);
/*
* Use bat file if it is compiled on Windows
*/
app.setExecutableLocation("/bin/echo");
/*
* Default tmp location
*/
String tempDir = "/home/ogce/scratch";
app.setScratchWorkingDirectory(tempDir);
app.setMaxMemory(10);
try {
airavataAPI.getApplicationManager().saveApplicationDescription(serviceName, trestleshpcHostAddress, appDesc);
} catch (AiravataAPIInvocationException e) {
e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
}
}
public void createPBSDocsForOGCE() {
HostDescription host = new HostDescription(GsisshHostType.type);
host.getType().setHostAddress(trestleshpcHostAddress);
host.getType().setHostName(trestleshpcHostAddress);
((GsisshHostType) host.getType()).setPort(22);
((GsisshHostType) host.getType()).setInstalledPath("/opt/torque/bin/");
try {
airavataAPI.getApplicationManager().saveHostDescription(host);
} catch (AiravataAPIInvocationException e) {
e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
}
/*
* Service Description creation and saving
*/
String serviceName = "SimpleEcho2";
ServiceDescription serv = new ServiceDescription();
serv.getType().setName(serviceName);
List inputList = new ArrayList();
List outputList = new ArrayList();
InputParameterType input = InputParameterType.Factory.newInstance();
input.setParameterName("echo_input");
ParameterType parameterType = input.addNewParameterType();
parameterType.setType(DataType.STRING);
parameterType.setName("String");
OutputParameterType output = OutputParameterType.Factory.newInstance();
output.setParameterName("echo_output");
ParameterType parameterType1 = output.addNewParameterType();
parameterType1.setType(DataType.STRING);
parameterType1.setName("String");
inputList.add(input);
outputList.add(output);
InputParameterType[] inputParamList = inputList.toArray(new InputParameterType[inputList.size()]);
OutputParameterType[] outputParamList = outputList.toArray(new OutputParameterType[outputList.size()]);
serv.getType().setInputParametersArray(inputParamList);
serv.getType().setOutputParametersArray(outputParamList);
try {
airavataAPI.getApplicationManager().saveServiceDescription(serv);
} catch (AiravataAPIInvocationException e) {
e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
}
/*
Application descriptor creation and saving
*/
ApplicationDescription appDesc = new ApplicationDescription(HpcApplicationDeploymentType.type);
HpcApplicationDeploymentType app = (HpcApplicationDeploymentType) appDesc.getType();
ApplicationDeploymentDescriptionType.ApplicationName name = ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
name.setStringValue("EchoLocal");
app.setApplicationName(name);
ProjectAccountType projectAccountType = app.addNewProjectAccount();
projectAccountType.setProjectAccountNumber("sds128");
QueueType queueType = app.addNewQueue();
queueType.setQueueName("normal");
app.setCpuCount(1);
app.setJobType(JobTypeType.SERIAL);
app.setNodeCount(1);
app.setProcessorsPerNode(1);
app.setMaxWallTime(10);
/*
* Use bat file if it is compiled on Windows
*/
app.setExecutableLocation("/bin/echo");
/*
* Default tmp location
*/
String tempDir = "/oasis/scratch/trestles/ogce/temp_project/";
app.setScratchWorkingDirectory(tempDir);
app.setInstalledParentPath("/opt/torque/bin/");
try {
airavataAPI.getApplicationManager().saveApplicationDescription(serviceName, trestleshpcHostAddress, appDesc);
} catch (AiravataAPIInvocationException e) {
e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
}
/*
* Service Description creation and saving
*/
String wrfserviceName = "WRF";
ServiceDescription wrfServ = new ServiceDescription();
wrfServ.getType().setName(wrfserviceName);
List wrfinputList = new ArrayList();
List wrfoutputList = new ArrayList();
InputParameterType wrfinput1 = InputParameterType.Factory.newInstance();
wrfinput1.setParameterName("WRF_Namelist");
ParameterType wrfparameterType1 = wrfinput1.addNewParameterType();
wrfparameterType1.setType(DataType.URI);
wrfparameterType1.setName("URI");
InputParameterType wrfinput2 = InputParameterType.Factory.newInstance();
wrfinput2.setParameterName("WRF_Input_File");
ParameterType wrfparameterType2 = wrfinput2.addNewParameterType();
wrfparameterType2.setType(DataType.URI);
wrfparameterType2.setName("URI");
InputParameterType wrfinput3 = InputParameterType.Factory.newInstance();
wrfinput3.setParameterName("WRF_Boundary_File");
ParameterType wrfparameterType3 = wrfinput3.addNewParameterType();
wrfparameterType3.setType(DataType.URI);
wrfparameterType3.setName("URI");
OutputParameterType wrfOutput1 = OutputParameterType.Factory.newInstance();
wrfOutput1.setParameterName("WRF_Output");
ParameterType wrfoutparameterType1 = wrfOutput1.addNewParameterType();
wrfoutparameterType1.setType(DataType.URI);
wrfoutparameterType1.setName("URI");
OutputParameterType wrfOutput2 = OutputParameterType.Factory.newInstance();
wrfOutput2.setParameterName("WRF_Execution_Log");
ParameterType wrfoutparameterType2 = wrfOutput2.addNewParameterType();
wrfoutparameterType2.setType(DataType.URI);
wrfoutparameterType2.setName("URI");
wrfinputList.add(wrfinput1);
wrfinputList.add(wrfinput2);
wrfinputList.add(wrfinput3);
wrfoutputList.add(wrfOutput1);
wrfoutputList.add(wrfOutput2);
InputParameterType[] wrfinputParamList = wrfinputList.toArray(new InputParameterType[wrfinputList.size()]);
OutputParameterType[] wrfoutputParamList = wrfoutputList.toArray(new OutputParameterType[wrfoutputList.size()]);
wrfServ.getType().setInputParametersArray(wrfinputParamList);
wrfServ.getType().setOutputParametersArray(wrfoutputParamList);
try {
airavataAPI.getApplicationManager().saveServiceDescription(wrfServ);
} catch (AiravataAPIInvocationException e) {
e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
}
/*
Application descriptor creation and saving
*/
ApplicationDescription wrfAppDesc = new ApplicationDescription(HpcApplicationDeploymentType.type);
HpcApplicationDeploymentType wrfApp = (HpcApplicationDeploymentType) wrfAppDesc.getType();
ApplicationDeploymentDescriptionType.ApplicationName wrfName = ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
wrfName.setStringValue("WRF");
wrfApp.setApplicationName(wrfName);
ProjectAccountType wrfprojectAccountType = wrfApp.addNewProjectAccount();
wrfprojectAccountType.setProjectAccountNumber("sds128");
QueueType wrfQueueType = wrfApp.addNewQueue();
wrfQueueType.setQueueName("normal");
wrfApp.setCpuCount(32);
wrfApp.setJobType(JobTypeType.MPI);
wrfApp.setNodeCount(2);
wrfApp.setProcessorsPerNode(1);
wrfApp.setMaxWallTime(30);
/*
* Use bat file if it is compiled on Windows
*/
wrfApp.setExecutableLocation("/home/ogce/apps/wrf_wrapper.sh");
/*
* Default tmp location
*/
String wrfTempDir = "/oasis/scratch/trestles/ogce/temp_project/";
wrfApp.setScratchWorkingDirectory(wrfTempDir);
wrfApp.setInstalledParentPath("/opt/torque/bin/");
try {
airavataAPI.getApplicationManager().saveApplicationDescription(wrfserviceName, trestleshpcHostAddress, wrfAppDesc);
} catch (AiravataAPIInvocationException e) {
e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
}
}
public void createSlurmDocs() {
HostDescription host = new HostDescription(GsisshHostType.type);
host.getType().setHostAddress(stampedeHostAddress);
host.getType().setHostName(stampedeHostAddress);
((GsisshHostType) host.getType()).setJobManager("slurm");
((GsisshHostType) host.getType()).setInstalledPath("/usr/bin/");
((GsisshHostType) host.getType()).setPort(2222);
((GsisshHostType) host.getType()).setMonitorMode("push");
try {
airavataAPI.getApplicationManager().saveHostDescription(host);
} catch (AiravataAPIInvocationException e) {
e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
}
/*
* Service Description creation and saving
*/
String serviceName = "SimpleEcho3";
ServiceDescription serv = new ServiceDescription();
serv.getType().setName(serviceName);
List inputList = new ArrayList();
List outputList = new ArrayList();
InputParameterType input = InputParameterType.Factory.newInstance();
input.setParameterName("echo_input");
ParameterType parameterType = input.addNewParameterType();
parameterType.setType(DataType.STRING);
parameterType.setName("String");
OutputParameterType output = OutputParameterType.Factory.newInstance();
output.setParameterName("echo_output");
ParameterType parameterType1 = output.addNewParameterType();
parameterType1.setType(DataType.STRING);
parameterType1.setName("String");
inputList.add(input);
outputList.add(output);
InputParameterType[] inputParamList = inputList.toArray(new InputParameterType[inputList.size()]);
OutputParameterType[] outputParamList = outputList.toArray(new OutputParameterType[outputList.size()]);
serv.getType().setInputParametersArray(inputParamList);
serv.getType().setOutputParametersArray(outputParamList);
try {
airavataAPI.getApplicationManager().saveServiceDescription(serv);
} catch (AiravataAPIInvocationException e) {
e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
}
/*
Application descriptor creation and saving
*/
ApplicationDescription appDesc = new ApplicationDescription(HpcApplicationDeploymentType.type);
HpcApplicationDeploymentType app = (HpcApplicationDeploymentType) appDesc.getType();
ApplicationDeploymentDescriptionType.ApplicationName name = ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
name.setStringValue("EchoLocal");
app.setApplicationName(name);
ProjectAccountType projectAccountType = app.addNewProjectAccount();
projectAccountType.setProjectAccountNumber("TG-STA110014S");
QueueType queueType = app.addNewQueue();
queueType.setQueueName("normal");
app.setCpuCount(1);
app.setJobType(JobTypeType.SERIAL);
app.setNodeCount(1);
app.setProcessorsPerNode(1);
app.setMaxWallTime(10);
/*
* Use bat file if it is compiled on Windows
*/
app.setExecutableLocation("/bin/echo");
/*
* Default tmp location
*/
String tempDir = "/home1/01437/ogce";
app.setScratchWorkingDirectory(tempDir);
app.setInstalledParentPath("/usr/bin/");
try {
airavataAPI.getApplicationManager().saveApplicationDescription(serviceName, stampedeHostAddress, appDesc);
} catch (AiravataAPIInvocationException e) {
e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
}
}
public void createSGEDocs() {
HostDescription host = new HostDescription(GsisshHostType.type);
host.getType().setHostAddress(lonestarHostAddress);
host.getType().setHostName(lonestarHostAddress);
((GsisshHostType) host.getType()).setJobManager("sge");
((GsisshHostType) host.getType()).setInstalledPath("/opt/sge6.2/bin/lx24-amd64/");
((GsisshHostType) host.getType()).setPort(22);
try {
airavataAPI.getApplicationManager().saveHostDescription(host);
} catch (AiravataAPIInvocationException e) {
e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
}
/*
* Service Description creation and saving
*/
String serviceName = "SimpleEcho4";
ServiceDescription serv = new ServiceDescription();
serv.getType().setName(serviceName);
List inputList = new ArrayList();
List outputList = new ArrayList();
InputParameterType input = InputParameterType.Factory.newInstance();
input.setParameterName("echo_input");
ParameterType parameterType = input.addNewParameterType();
parameterType.setType(DataType.STRING);
parameterType.setName("String");
OutputParameterType output = OutputParameterType.Factory.newInstance();
output.setParameterName("echo_output");
ParameterType parameterType1 = output.addNewParameterType();
parameterType1.setType(DataType.STRING);
parameterType1.setName("String");
inputList.add(input);
outputList.add(output);
InputParameterType[] inputParamList = inputList.toArray(new InputParameterType[inputList.size()]);
OutputParameterType[] outputParamList = outputList.toArray(new OutputParameterType[outputList.size()]);
serv.getType().setInputParametersArray(inputParamList);
serv.getType().setOutputParametersArray(outputParamList);
try {
airavataAPI.getApplicationManager().saveServiceDescription(serv);
} catch (AiravataAPIInvocationException e) {
e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
}
/*
Application descriptor creation and saving
*/
ApplicationDescription appDesc = new ApplicationDescription(HpcApplicationDeploymentType.type);
HpcApplicationDeploymentType app = (HpcApplicationDeploymentType) appDesc.getType();
ApplicationDeploymentDescriptionType.ApplicationName name = ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
name.setStringValue("EchoLocal");
app.setApplicationName(name);
ProjectAccountType projectAccountType = app.addNewProjectAccount();
projectAccountType.setProjectAccountNumber("TG-STA110014S");
QueueType queueType = app.addNewQueue();
queueType.setQueueName("normal");
app.setCpuCount(1);
app.setJobType(JobTypeType.SERIAL);
app.setNodeCount(1);
app.setProcessorsPerNode(1);
app.setMaxWallTime(10);
/*
* Use bat file if it is compiled on Windows
*/
app.setExecutableLocation("/bin/echo");
/*
* Default tmp location
*/
String tempDir = "/home1/01437/ogce";
app.setScratchWorkingDirectory(tempDir);
app.setInstalledParentPath("/opt/sge6.2/bin/lx24-amd64/");
try {
airavataAPI.getApplicationManager().saveApplicationDescription(serviceName, lonestarHostAddress, appDesc);
} catch (AiravataAPIInvocationException e) {
e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
}
}
public void createEchoHostDocs() {
String serviceName = "Echo";
ServiceDescription serviceDescription = new ServiceDescription();
List inputParameters = new ArrayList();
List outputParameters = new ArrayList();
serviceDescription.getType().setName(serviceName);
serviceDescription.getType().setDescription("Echo service");
// Creating input parameters
InputParameterType parameter = InputParameterType.Factory.newInstance();
parameter.setParameterName("echo_input");
parameter.setParameterDescription("echo input");
ParameterType parameterType = parameter.addNewParameterType();
parameterType.setType(DataType.STRING);
parameterType.setName("String");
inputParameters.add(parameter);
// Creating output parameters
OutputParameterType outputParameter = OutputParameterType.Factory.newInstance();
outputParameter.setParameterName("echo_output");
outputParameter.setParameterDescription("Echo output");
ParameterType outputParaType = outputParameter.addNewParameterType();
outputParaType.setType(DataType.STRING);
outputParaType.setName("String");
outputParameters.add(outputParameter);
// Setting input and output parameters to serviceDescriptor
serviceDescription.getType().setInputParametersArray(inputParameters.toArray(new InputParameterType[]{}));
serviceDescription.getType().setOutputParametersArray(outputParameters.toArray(new OutputParameterType[]{}));
try {
airavataAPI.getApplicationManager().saveServiceDescription(serviceDescription);
} catch (AiravataAPIInvocationException e) {
e.printStackTrace(); // To change body of catch statement use File |
// Settings | File Templates.
}
// Localhost
ApplicationDescription applicationDeploymentDescription = new ApplicationDescription();
ApplicationDeploymentDescriptionType applicationDeploymentDescriptionType = applicationDeploymentDescription.getType();
applicationDeploymentDescriptionType.addNewApplicationName().setStringValue(serviceName);
applicationDeploymentDescriptionType.setExecutableLocation("/bin/echo");
applicationDeploymentDescriptionType.setScratchWorkingDirectory("/tmp");
try {
airavataAPI.getApplicationManager().saveApplicationDescription(serviceName, "localhost", applicationDeploymentDescription);
} catch (AiravataAPIInvocationException e) {
e.printStackTrace(); // To change body of catch statement use File |
// Settings | File Templates.
}
// Stampede
/*
* Application descriptor creation and saving
*/
ApplicationDescription appDesc1 = new ApplicationDescription(HpcApplicationDeploymentType.type);
HpcApplicationDeploymentType app1 = (HpcApplicationDeploymentType) appDesc1.getType();
ApplicationDeploymentDescriptionType.ApplicationName name = ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
name.setStringValue(serviceName);
app1.setApplicationName(name);
ProjectAccountType projectAccountType = app1.addNewProjectAccount();
projectAccountType.setProjectAccountNumber("TG-STA110014S");
QueueType queueType = app1.addNewQueue();
queueType.setQueueName("normal");
app1.setCpuCount(1);
app1.setJobType(JobTypeType.SERIAL);
app1.setNodeCount(1);
app1.setProcessorsPerNode(1);
app1.setMaxWallTime(10);
/*
* Use bat file if it is compiled on Windows
*/
app1.setExecutableLocation("/bin/echo");
/*
* Default tmp location
*/
String tempDir = "/home1/01437/ogce";
app1.setScratchWorkingDirectory(tempDir);
app1.setInstalledParentPath("/usr/bin/");
try {
airavataAPI.getApplicationManager().saveApplicationDescription(serviceName, stampedeHostAddress, appDesc1);
} catch (AiravataAPIInvocationException e) {
e.printStackTrace(); // To change body of catch statement use File |
// Settings | File Templates.
}
// Trestles
/*
* Application descriptor creation and saving
*/
ApplicationDescription appDesc2 = new ApplicationDescription(HpcApplicationDeploymentType.type);
HpcApplicationDeploymentType app2 = (HpcApplicationDeploymentType) appDesc2.getType();
ApplicationDeploymentDescriptionType.ApplicationName name2 = ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
name2.setStringValue(serviceName);
app2.setApplicationName(name);
ProjectAccountType projectAccountType2 = app2.addNewProjectAccount();
projectAccountType2.setProjectAccountNumber("sds128");
QueueType queueType2 = app2.addNewQueue();
queueType2.setQueueName("normal");
app2.setCpuCount(1);
app2.setJobType(JobTypeType.SERIAL);
app2.setNodeCount(1);
app2.setProcessorsPerNode(1);
app2.setMaxWallTime(10);
/*
* Use bat file if it is compiled on Windows
*/
app2.setExecutableLocation("/bin/echo");
/*
* Default tmp location
*/
String tempDir2 = "/home/ogce/scratch";
app2.setScratchWorkingDirectory(tempDir2);
app2.setInstalledParentPath("/opt/torque/bin/");
try {
airavataAPI.getApplicationManager().saveApplicationDescription(serviceName, trestleshpcHostAddress, appDesc2);
} catch (AiravataAPIInvocationException e) {
e.printStackTrace(); // To change body of catch statement use File |
// Settings | File Templates.
}
// Lonestar
/*
* Application descriptor creation and saving
*/
ApplicationDescription appDesc3 = new ApplicationDescription(HpcApplicationDeploymentType.type);
HpcApplicationDeploymentType app3 = (HpcApplicationDeploymentType) appDesc3.getType();
ApplicationDeploymentDescriptionType.ApplicationName name3 = ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
name3.setStringValue(serviceName);
app3.setApplicationName(name);
ProjectAccountType projectAccountType3 = app3.addNewProjectAccount();
projectAccountType3.setProjectAccountNumber("TG-STA110014S");
QueueType queueType3 = app3.addNewQueue();
queueType3.setQueueName("normal");
app3.setCpuCount(1);
app3.setJobType(JobTypeType.SERIAL);
app3.setNodeCount(1);
app3.setProcessorsPerNode(1);
app3.setMaxWallTime(10);
/*
* Use bat file if it is compiled on Windows
*/
app3.setExecutableLocation("/bin/echo");
/*
* Default tmp location
*/
String tempDir3 = "/home1/01437/ogce";
app3.setScratchWorkingDirectory(tempDir3);
app3.setInstalledParentPath("/opt/sge6.2/bin/lx24-amd64/");
try {
airavataAPI.getApplicationManager().saveApplicationDescription(serviceName, lonestarHostAddress, appDesc3);
} catch (AiravataAPIInvocationException e) {
e.printStackTrace(); // To change body of catch statement use File |
// Settings | File Templates.
}
}
public void createBigRedDocs() {
/*
* Host
*/
HostDescription host = new HostDescription(SSHHostType.type);
host.getType().setHostAddress(bigRed2HostAddress);
host.getType().setHostName("bigred2");
((SSHHostType) host.getType()).setHpcResource(true);
try {
airavataAPI.getApplicationManager().saveHostDescription(host);
} catch (AiravataAPIInvocationException e) {
e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
}
/*
* App
*/
ApplicationDescription appDesc = new ApplicationDescription(HpcApplicationDeploymentType.type);
HpcApplicationDeploymentType app = (HpcApplicationDeploymentType) appDesc.getType();
ApplicationDeploymentDescriptionType.ApplicationName name = ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
name.setStringValue("EchoLocal");
app.setApplicationName(name);
app.setCpuCount(1);
app.setJobType(JobTypeType.SERIAL);
app.setNodeCount(1);
app.setProcessorsPerNode(1);
/*
* Use bat file if it is compiled on Windows
*/
app.setExecutableLocation("/bin/echo");
/*
* Default tmp location
*/
String tempDir = "/tmp";
String date = (new Date()).toString();
date = date.replaceAll(" ", "_");
date = date.replaceAll(":", "_");
tempDir = tempDir + File.separator
+ "SimpleEcho" + "_" + date + "_" + UUID.randomUUID();
System.out.println(tempDir);
app.setScratchWorkingDirectory(tempDir);
app.setStaticWorkingDirectory(tempDir);
app.setInputDataDirectory(tempDir + File.separator + "inputData");
app.setOutputDataDirectory(tempDir + File.separator + "outputData");
app.setStandardOutput(tempDir + File.separator + app.getApplicationName().getStringValue() + ".stdout");
app.setStandardError(tempDir + File.separator + app.getApplicationName().getStringValue() + ".stderr");
app.setMaxWallTime(5);
app.setJobSubmitterCommand("aprun -n 1");
app.setInstalledParentPath("/opt/torque/torque-4.2.3.1/bin/");
/*
* Service
*/
ServiceDescription serv = new ServiceDescription();
serv.getType().setName("SimpleEchoBR");
List inputList = new ArrayList();
InputParameterType input = InputParameterType.Factory.newInstance();
input.setParameterName("echo_input");
input.setParameterType(StringParameterType.Factory.newInstance());
inputList.add(input);
InputParameterType[] inputParamList = inputList.toArray(new InputParameterType[inputList
.size()]);
List outputList = new ArrayList();
OutputParameterType output = OutputParameterType.Factory.newInstance();
output.setParameterName("echo_output");
output.setParameterType(StringParameterType.Factory.newInstance());
outputList.add(output);
OutputParameterType[] outputParamList = outputList
.toArray(new OutputParameterType[outputList.size()]);
serv.getType().setInputParametersArray(inputParamList);
serv.getType().setOutputParametersArray(outputParamList);
try {
airavataAPI.getApplicationManager().saveServiceDescription(serv);
} catch (AiravataAPIInvocationException e) {
e.printStackTrace(); // To change body of catch statement use File |
// Settings | File Templates.
}
try {
airavataAPI.getApplicationManager().saveApplicationDescription("SimpleEchoBR", trestleshpcHostAddress, appDesc);
} catch (AiravataAPIInvocationException e) {
e.printStackTrace(); // To change body of catch statement use File |
// Settings | File Templates.
}
}
public AiravataAPI getAiravataAPI() {
return airavataAPI;
}
public void setAiravataAPI(AiravataAPI airavataAPI) {
this.airavataAPI = airavataAPI;
}
}
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