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Client API for accessing Airavata Services
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///**
// * Licensed to the Apache Software Foundation (ASF) under one
// * or more contributor license agreements. See the NOTICE file
// * distributed with this work for additional information
// * regarding copyright ownership. The ASF licenses this file
// * to you under the Apache License, Version 2.0 (the
// * "License"); you may not use this file except in compliance
// * with the License. You may obtain a copy of the License at
// *
// * http://www.apache.org/licenses/LICENSE-2.0
// *
// * Unless required by applicable law or agreed to in writing,
// * software distributed under the License is distributed on an
// * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
// * KIND, either express or implied. See the License for the
// * specific language governing permissions and limitations
// * under the License.
// */
//
//package org.apache.airavata.client.tools;
//
//import java.io.File;
//import java.util.ArrayList;
//import java.util.Date;
//import java.util.List;
//import java.util.UUID;
//
//import org.apache.airavata.client.api.AiravataAPI;
//import org.apache.airavata.client.api.exception.AiravataAPIInvocationException;
//import org.apache.airavata.commons.gfac.type.ApplicationDescription;
//import org.apache.airavata.commons.gfac.type.HostDescription;
//import org.apache.airavata.commons.gfac.type.ServiceDescription;
//import org.apache.airavata.schemas.gfac.ApplicationDeploymentDescriptionType;
//import org.apache.airavata.schemas.gfac.DataType;
//import org.apache.airavata.schemas.gfac.GsisshHostType;
//import org.apache.airavata.schemas.gfac.HpcApplicationDeploymentType;
//import org.apache.airavata.schemas.gfac.InputParameterType;
//import org.apache.airavata.schemas.gfac.JobTypeType;
//import org.apache.airavata.schemas.gfac.OutputParameterType;
//import org.apache.airavata.schemas.gfac.ParameterType;
//import org.apache.airavata.schemas.gfac.ProjectAccountType;
//import org.apache.airavata.schemas.gfac.QueueType;
//
//public class UltrascanDocumentCreator {
//
// private AiravataAPI airavataAPI = null;
// private String hpcHostAddress = "trestles.sdsc.edu";
// private String gsiSshHostNameTrestles = "gsissh-trestles";
// private String gsiSshHostNameStampede = "gsissh-stampede";
//
//
// public UltrascanDocumentCreator(AiravataAPI airavataAPI) {
// this.airavataAPI = airavataAPI;
// }
//
// public void createEchoPBSDocsforTestles() {
// HostDescription host = new HostDescription(GsisshHostType.type);
// host.getType().setHostAddress(hpcHostAddress);
// host.getType().setHostName(gsiSshHostNameTrestles);
// ((GsisshHostType) host.getType()).setPort(22);
// ((GsisshHostType) host.getType()).setInstalledPath("/opt/torque/bin/");
//
// try {
// airavataAPI.getApplicationManager().saveHostDescription(host);
// } catch (AiravataAPIInvocationException e) {
// e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
// }
// /*
// * Service Description creation and saving
// */
// String serviceName = "US3EchoTrestles";
// ServiceDescription serv = new ServiceDescription();
// serv.getType().setName(serviceName);
//
// List inputList = new ArrayList();
// List outputList = new ArrayList();
//
//
// InputParameterType input = InputParameterType.Factory.newInstance();
// input.setParameterName("echo_input");
// ParameterType parameterType = input.addNewParameterType();
// parameterType.setType(DataType.STRING);
// parameterType.setName("String");
//
// OutputParameterType output = OutputParameterType.Factory.newInstance();
// output.setParameterName("echo_output");
// ParameterType parameterType1 = output.addNewParameterType();
// parameterType1.setType(DataType.STRING);
// parameterType1.setName("String");
//
// inputList.add(input);
// outputList.add(output);
//
// InputParameterType[] inputParamList = inputList.toArray(new InputParameterType[inputList.size()]);
// OutputParameterType[] outputParamList = outputList.toArray(new OutputParameterType[outputList.size()]);
//
// serv.getType().setInputParametersArray(inputParamList);
// serv.getType().setOutputParametersArray(outputParamList);
// try {
// airavataAPI.getApplicationManager().saveServiceDescription(serv);
// } catch (AiravataAPIInvocationException e) {
// e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
// }
//
// /*
// Application descriptor creation and saving
// */
// ApplicationDescription appDesc = new ApplicationDescription(HpcApplicationDeploymentType.type);
// HpcApplicationDeploymentType app = (HpcApplicationDeploymentType) appDesc.getType();
// ApplicationDeploymentDescriptionType.ApplicationName name = ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
// name.setStringValue(serviceName);
// app.setApplicationName(name);
// ProjectAccountType projectAccountType = app.addNewProjectAccount();
// projectAccountType.setProjectAccountNumber("uot111");
//
// QueueType queueType = app.addNewQueue();
// queueType.setQueueName("normal");
//
// app.setCpuCount(1);
// app.setJobType(JobTypeType.SERIAL);
// app.setNodeCount(1);
// app.setProcessorsPerNode(1);
// app.setMaxWallTime(10);
// /*
// * Use bat file if it is compiled on Windows
// */
// app.setExecutableLocation("/bin/echo");
//
// /*
// * Default tmp location
// */
// String tempDir = "/oasis/projects/nsf/uot111/us3/airavata-workdirs/";
//
// app.setScratchWorkingDirectory(tempDir);
// app.setInstalledParentPath("/opt/torque/bin/");
//
// try {
// airavataAPI.getApplicationManager().saveApplicationDescription(serviceName, gsiSshHostNameTrestles, appDesc);
// } catch (AiravataAPIInvocationException e) {
// e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
// }
// }
//
// public void createMPIPBSDocsTrestles() {
// HostDescription host = new HostDescription(GsisshHostType.type);
// host.getType().setHostAddress(hpcHostAddress);
// host.getType().setHostName(gsiSshHostNameTrestles);
// ((GsisshHostType) host.getType()).setPort(22);
// ((GsisshHostType) host.getType()).setInstalledPath("/opt/torque/bin/");
//
// try {
// airavataAPI.getApplicationManager().saveHostDescription(host);
// } catch (AiravataAPIInvocationException e) {
// e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
// }
// /*
// * Service Description creation and saving
// */
// String serviceName = "US3AppTrestles";
// ServiceDescription serv = new ServiceDescription();
// serv.getType().setName(serviceName);
//
// List inputList = new ArrayList();
// List outputList = new ArrayList();
//
//
// InputParameterType input = InputParameterType.Factory.newInstance();
// input.setParameterName("input");
// ParameterType parameterType = input.addNewParameterType();
// parameterType.setType(DataType.URI);
// parameterType.setName("URI");
//
// OutputParameterType output = OutputParameterType.Factory.newInstance();
// output.setParameterName("output");
// ParameterType parameterType1 = output.addNewParameterType();
// parameterType1.setType(DataType.URI);
// parameterType1.setName("URI");
//
// OutputParameterType output1 = OutputParameterType.Factory.newInstance();
// output1.setParameterName("stdout");
// ParameterType parameterType2 = output1.addNewParameterType();
// parameterType2.setType(DataType.STD_OUT);
// parameterType2.setName("StdOut");
//
// OutputParameterType output2 = OutputParameterType.Factory.newInstance();
// output2.setParameterName("stderr");
// ParameterType parameterType3 = output2.addNewParameterType();
// parameterType3.setType(DataType.STD_ERR);
// parameterType3.setName("StdErr");
//
// inputList.add(input);
// outputList.add(output);
// outputList.add(output1);
// outputList.add(output2);
//
// InputParameterType[] inputParamList = inputList.toArray(new InputParameterType[inputList.size()]);
// OutputParameterType[] outputParamList = outputList.toArray(new OutputParameterType[outputList.size()]);
//
// serv.getType().setInputParametersArray(inputParamList);
// serv.getType().setOutputParametersArray(outputParamList);
// try {
// airavataAPI.getApplicationManager().saveServiceDescription(serv);
// } catch (AiravataAPIInvocationException e) {
// e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
// }
//
// /*
// Application descriptor creation and saving
// */
// ApplicationDescription appDesc = new ApplicationDescription(HpcApplicationDeploymentType.type);
// HpcApplicationDeploymentType app = (HpcApplicationDeploymentType) appDesc.getType();
// ApplicationDeploymentDescriptionType.ApplicationName name = ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
// name.setStringValue(serviceName);
// app.setApplicationName(name);
// ProjectAccountType projectAccountType = app.addNewProjectAccount();
// projectAccountType.setProjectAccountNumber("uot111");
//
// QueueType queueType = app.addNewQueue();
// queueType.setQueueName("normal");
//
// app.setCpuCount(1);
// app.setJobType(JobTypeType.MPI);
// app.setNodeCount(32);
// app.setProcessorsPerNode(2);
// app.setMaxWallTime(10);
// /*
// * Use bat file if it is compiled on Windows
// */
// app.setExecutableLocation("/home/us3/trestles/bin/us_mpi_analysis");
//
// /*
// * Default tmp location
// */
// String tempDir = "/oasis/projects/nsf/uot111/us3/airavata-workdirs/";
// app.setScratchWorkingDirectory(tempDir);
// app.setInstalledParentPath("/opt/torque/bin/");
// app.setJobSubmitterCommand("/opt/mvapich2/pgi/ib/bin/mpiexec");
// try {
// airavataAPI.getApplicationManager().saveApplicationDescription(serviceName, gsiSshHostNameTrestles, appDesc);
// } catch (AiravataAPIInvocationException e) {
// e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
// }
// }
// public void createMPISLURMDocsStampede() {
// HostDescription host = new HostDescription(GsisshHostType.type);
// host.getType().setHostAddress("stampede.tacc.xsede.org");
// host.getType().setHostName("gsissh-stampede");
// ((GsisshHostType) host.getType()).setJobManager("slurm");
// ((GsisshHostType) host.getType()).setInstalledPath("/usr/bin/");
// ((GsisshHostType) host.getType()).setPort(2222);
//
// try {
// airavataAPI.getApplicationManager().saveHostDescription(host);
// } catch (AiravataAPIInvocationException e) {
// e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
// }
// /*
// * Service Description creation and saving
// */
// String serviceName = "US3AppStampede";
// ServiceDescription serv = new ServiceDescription();
// serv.getType().setName(serviceName);
//
// List inputList = new ArrayList();
// List outputList = new ArrayList();
//
//
// InputParameterType input = InputParameterType.Factory.newInstance();
// input.setParameterName("input");
// ParameterType parameterType = input.addNewParameterType();
// parameterType.setType(DataType.URI);
// parameterType.setName("URI");
//
// OutputParameterType output = OutputParameterType.Factory.newInstance();
// output.setParameterName("output");
// ParameterType parameterType1 = output.addNewParameterType();
// parameterType1.setType(DataType.URI);
// parameterType1.setName("URI");
//
// OutputParameterType output1 = OutputParameterType.Factory.newInstance();
// output1.setParameterName("stdout");
// ParameterType parameterType2 = output1.addNewParameterType();
// parameterType2.setType(DataType.STD_OUT);
// parameterType2.setName("StdOut");
//
// OutputParameterType output2 = OutputParameterType.Factory.newInstance();
// output2.setParameterName("stderr");
// ParameterType parameterType3 = output2.addNewParameterType();
// parameterType3.setType(DataType.STD_ERR);
// parameterType3.setName("StdErr");
//
// inputList.add(input);
// outputList.add(output);
// outputList.add(output1);
// outputList.add(output2);
//
// InputParameterType[] inputParamList = inputList.toArray(new InputParameterType[inputList.size()]);
// OutputParameterType[] outputParamList = outputList.toArray(new OutputParameterType[outputList.size()]);
//
// serv.getType().setInputParametersArray(inputParamList);
// serv.getType().setOutputParametersArray(outputParamList);
// try {
// airavataAPI.getApplicationManager().saveServiceDescription(serv);
// } catch (AiravataAPIInvocationException e) {
// e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
// }
//
// /*
// Application descriptor creation and saving
// */
// ApplicationDescription appDesc = new ApplicationDescription(HpcApplicationDeploymentType.type);
// HpcApplicationDeploymentType app = (HpcApplicationDeploymentType) appDesc.getType();
// ApplicationDeploymentDescriptionType.ApplicationName name = ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
// name.setStringValue(serviceName);
// app.setApplicationName(name);
// ProjectAccountType projectAccountType = app.addNewProjectAccount();
// projectAccountType.setProjectAccountNumber("TG-MCB070039N");
//
// QueueType queueType = app.addNewQueue();
// queueType.setQueueName("normal");
//
// app.setCpuCount(1);
// app.setJobType(JobTypeType.MPI);
// app.setNodeCount(32);
// app.setProcessorsPerNode(2);
// app.setMaxWallTime(10);
// /*
// * Use bat file if it is compiled on Windows
// */
// app.setExecutableLocation("/home1/01623/us3/bin/us_mpi_analysis");
//
// /*
// * Default tmp location
// */
// String tempDir = "/home1/01623/us3";
// app.setScratchWorkingDirectory(tempDir);
// app.setInstalledParentPath("/usr/bin/");
// app.setJobSubmitterCommand("/usr/local/bin/ibrun");
// try {
// airavataAPI.getApplicationManager().saveApplicationDescription(serviceName, gsiSshHostNameStampede, appDesc);
// } catch (AiravataAPIInvocationException e) {
// e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
// }
// }
// public void createEchoSlurmDocsofStampede() {
// HostDescription host = new HostDescription(GsisshHostType.type);
// host.getType().setHostAddress("stampede.tacc.xsede.org");
// host.getType().setHostName("stampede-host");
// ((GsisshHostType) host.getType()).setJobManager("slurm");
// ((GsisshHostType) host.getType()).setInstalledPath("/usr/bin/");
// ((GsisshHostType) host.getType()).setPort(2222);
// ((GsisshHostType) host.getType()).setMonitorMode("push");
//// ((GsisshHostType) host.getType()).setMo(2222);
//
//
// try {
// airavataAPI.getApplicationManager().saveHostDescription(host);
// } catch (AiravataAPIInvocationException e) {
// e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
// }
// /*
// * Service Description creation and saving
// */
// String serviceName = "US3EchoStampede";
// ServiceDescription serv = new ServiceDescription();
// serv.getType().setName(serviceName);
//
// List inputList = new ArrayList();
// List outputList = new ArrayList();
//
//
// InputParameterType input = InputParameterType.Factory.newInstance();
// input.setParameterName("echo_input");
// ParameterType parameterType = input.addNewParameterType();
// parameterType.setType(DataType.STRING);
// parameterType.setName("String");
//
// OutputParameterType output = OutputParameterType.Factory.newInstance();
// output.setParameterName("echo_output");
// ParameterType parameterType1 = output.addNewParameterType();
// parameterType1.setType(DataType.STRING);
// parameterType1.setName("String");
//
// inputList.add(input);
// outputList.add(output);
//
// InputParameterType[] inputParamList = inputList.toArray(new InputParameterType[inputList.size()]);
// OutputParameterType[] outputParamList = outputList.toArray(new OutputParameterType[outputList.size()]);
//
// serv.getType().setInputParametersArray(inputParamList);
// serv.getType().setOutputParametersArray(outputParamList);
// try {
// airavataAPI.getApplicationManager().saveServiceDescription(serv);
// } catch (AiravataAPIInvocationException e) {
// e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
// }
//
// /*
// Application descriptor creation and saving
// */
// ApplicationDescription appDesc = new ApplicationDescription(HpcApplicationDeploymentType.type);
// HpcApplicationDeploymentType app = (HpcApplicationDeploymentType) appDesc.getType();
// ApplicationDeploymentDescriptionType.ApplicationName name = ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
// name.setStringValue(serviceName);
// app.setApplicationName(name);
// ProjectAccountType projectAccountType = app.addNewProjectAccount();
// projectAccountType.setProjectAccountNumber("TG-MCB070039N");
//
// QueueType queueType = app.addNewQueue();
// queueType.setQueueName("normal");
//
// app.setCpuCount(1);
// app.setJobType(JobTypeType.SERIAL);
// app.setNodeCount(1);
// app.setProcessorsPerNode(1);
// app.setMaxWallTime(10);
// /*
// * Use bat file if it is compiled on Windows
// */
// app.setExecutableLocation("/bin/echo");
//
// /*
// * Default tmp location
// */
// String tempDir = "/home1/01623/us3";
//
// app.setScratchWorkingDirectory(tempDir);
// app.setInstalledParentPath("/usr/bin/");
//
// try {
// airavataAPI.getApplicationManager().saveApplicationDescription(serviceName, gsiSshHostNameStampede, appDesc);
// } catch (AiravataAPIInvocationException e) {
// e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
// }
// }
//
// public AiravataAPI getAiravataAPI() {
// return airavataAPI;
// }
//
// public void setAiravataAPI(AiravataAPI airavataAPI) {
// this.airavataAPI = airavataAPI;
// }
//}
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