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This is the extension of GFAC to use GRAM
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/*
*
* Licensed to the Apache Software Foundation (ASF) under one
* or more contributor license agreements. See the NOTICE file
* distributed with this work for additional information
* regarding copyright ownership. The ASF licenses this file
* to you under the Apache License, Version 2.0 (the
* "License"); you may not use this file except in compliance
* with the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing,
* software distributed under the License is distributed on an
* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
* KIND, either express or implied. See the License for the
* specific language governing permissions and limitations
* under the License.
*
*/
package org.apache.airavata.gfac.bes.utils;
import javax.xml.namespace.QName;
import org.apache.commons.httpclient.URIException;
import org.apache.xmlbeans.XmlCursor;
import org.apache.xmlbeans.XmlObject;
import org.ggf.schemas.jsdl.x2005.x11.jsdl.ApplicationType;
import org.ggf.schemas.jsdl.x2005.x11.jsdl.BoundaryType;
import org.ggf.schemas.jsdl.x2005.x11.jsdl.CPUArchitectureType;
import org.ggf.schemas.jsdl.x2005.x11.jsdl.CandidateHostsType;
import org.ggf.schemas.jsdl.x2005.x11.jsdl.CreationFlagEnumeration;
import org.ggf.schemas.jsdl.x2005.x11.jsdl.DataStagingType;
import org.ggf.schemas.jsdl.x2005.x11.jsdl.ExactType;
import org.ggf.schemas.jsdl.x2005.x11.jsdl.JobDefinitionType;
import org.ggf.schemas.jsdl.x2005.x11.jsdl.JobDescriptionType;
import org.ggf.schemas.jsdl.x2005.x11.jsdl.JobIdentificationType;
import org.ggf.schemas.jsdl.x2005.x11.jsdl.OperatingSystemType;
import org.ggf.schemas.jsdl.x2005.x11.jsdl.OperatingSystemTypeEnumeration;
import org.ggf.schemas.jsdl.x2005.x11.jsdl.OperatingSystemTypeType;
import org.ggf.schemas.jsdl.x2005.x11.jsdl.ProcessorArchitectureEnumeration;
import org.ggf.schemas.jsdl.x2005.x11.jsdl.ResourcesType;
import org.ggf.schemas.jsdl.x2005.x11.jsdl.SourceTargetType;
import org.ggf.schemas.jsdl.x2005.x11.jsdlPosix.EnvironmentType;
import org.ggf.schemas.jsdl.x2005.x11.jsdlPosix.POSIXApplicationDocument;
import org.ggf.schemas.jsdl.x2005.x11.jsdlPosix.POSIXApplicationType;
import org.ggf.schemas.jsdl.x2006.x07.jsdlHpcpa.HPCProfileApplicationDocument;
import org.ggf.schemas.jsdl.x2006.x07.jsdlHpcpa.HPCProfileApplicationType;
import org.ogf.schemas.jsdl.x2007.x02.jsdlSpmd.SPMDApplicationDocument;
import org.ogf.schemas.jsdl.x2007.x02.jsdlSpmd.SPMDApplicationType;
/**
*
* @author shahbaz memon, bastian demuth
*
*/
public class JSDLUtils
{
public static final int FLAG_OVERWRITE = 1;
public static final int FLAG_APPEND = 2;
public static final int FLAG_DELETE_ON_TERMINATE = 32;
public static final QName POSIX_APPLICATION=POSIXApplicationDocument.type.getDocumentElementName();
public static final QName HPC_PROFILE_APPLICATION=HPCProfileApplicationDocument.type.getDocumentElementName();
public static final QName SPMD_APPLICATION=SPMDApplicationDocument.type.getDocumentElementName();
public static final String PROCESSESPERHOST = "ProcessesPerHost";
public static final String NUMBEROFPROCESSES = "NumberOfProcesses";
public static final String THREADSPERHOST = "ThreadsPerHost";
public static EnvironmentType addEnvVariable(JobDefinitionType def,String name, String value) {
POSIXApplicationType posixApp = getOrCreatePOSIXApplication(def);
EnvironmentType newEnv = posixApp.addNewEnvironment();
newEnv.setName(name);
newEnv.setStringValue(value);
return newEnv;
}
public static void setApplicationName(JobDefinitionType value, String applicationName) {
getOrCreateApplication(value).setApplicationName(applicationName);
}
public static void setApplicationVersion(JobDefinitionType value, String applicationVersion) {
getOrCreateApplication(value).setApplicationVersion(applicationVersion);
}
public static void addProjectName(JobDefinitionType value, String projectName) {
getOrCreateJobIdentification(value).addNewJobProject().setStringValue(projectName);
}
public static void addMultipleProjectNames(JobDefinitionType value, String[] projectNames) {
for (String name : projectNames) {
getOrCreateJobIdentification(value).addNewJobProject().setStringValue(name);
}
}
public static void addCandidateHost(JobDefinitionType value, String host) {
getOrCreateCandidateHosts(value).addHostName(host);
}
public static void addDataStagingTargetElement(JobDefinitionType value, String fileSystem, String file, String uri) {
addDataStagingTargetElement(value,fileSystem, file, uri, 1);
}
public static void addDataStagingTargetElement(JobDefinitionType value, String fileSystem, String file, String uri, int flags) {
JobDescriptionType jobDescr = getOrCreateJobDescription(value);
DataStagingType newDS = jobDescr.addNewDataStaging();
CreationFlagEnumeration.Enum creationFlag = CreationFlagEnumeration.DONT_OVERWRITE;
if((flags & FLAG_OVERWRITE) != 0) creationFlag = CreationFlagEnumeration.OVERWRITE;
if((flags & FLAG_APPEND) != 0) creationFlag = CreationFlagEnumeration.APPEND;
boolean deleteOnTerminate = (flags & FLAG_DELETE_ON_TERMINATE) != 0;
newDS.setCreationFlag(creationFlag);
newDS.setDeleteOnTermination(deleteOnTerminate);
SourceTargetType target = newDS.addNewTarget();
try {
if (uri != null) {
URIUtils.encodeAll(uri);
target.setURI(uri);
}
} catch (URIException e) {
}
newDS.setFileName(file);
if (fileSystem != null && !fileSystem.equals("Work")) { //$NON-NLS-1$
newDS.setFilesystemName(fileSystem);
}
}
public static void addDataStagingSourceElement(JobDefinitionType value, String uri, String fileSystem, String file) {
addDataStagingSourceElement(value, uri, fileSystem, file, 1);
}
public static void addDataStagingSourceElement(JobDefinitionType value, String uri, String fileSystem, String file, int flags) {
JobDescriptionType jobDescr = getOrCreateJobDescription(value);
try {
uri = (uri == null) ? null : URIUtils.encodeAll(uri);
} catch (URIException e) {
}
DataStagingType newDS = jobDescr.addNewDataStaging();
CreationFlagEnumeration.Enum creationFlag = CreationFlagEnumeration.DONT_OVERWRITE;
if((flags & FLAG_OVERWRITE) != 0) creationFlag = CreationFlagEnumeration.OVERWRITE;
if((flags & FLAG_APPEND) != 0) creationFlag = CreationFlagEnumeration.APPEND;
boolean deleteOnTerminate = (flags & FLAG_DELETE_ON_TERMINATE) != 0;
newDS.setCreationFlag(creationFlag);
newDS.setDeleteOnTermination(deleteOnTerminate);
SourceTargetType source = newDS.addNewSource();
source.setURI(uri);
newDS.setFileName(file);
if (fileSystem != null && !fileSystem.equals("Work")) { //$NON-NLS-1$
newDS.setFilesystemName(fileSystem);
}
}
public static ApplicationType getOrCreateApplication(JobDefinitionType value) {
JobDescriptionType jobDescr = getOrCreateJobDescription(value);
if (!jobDescr.isSetApplication()) {
jobDescr.addNewApplication();
}
return jobDescr.getApplication();
}
public static CandidateHostsType getOrCreateCandidateHosts(JobDefinitionType value) {
ResourcesType resources = getOrCreateResources(value);
if (!resources.isSetCandidateHosts()) {
resources.addNewCandidateHosts();
}
return resources.getCandidateHosts();
}
public static CPUArchitectureType getOrCreateCPUArchitecture(JobDefinitionType value) {
ResourcesType jobResources = getOrCreateResources(value);
if (!jobResources.isSetCPUArchitecture()) {
jobResources.addNewCPUArchitecture();
}
return jobResources.getCPUArchitecture();
}
public static org.ggf.schemas.jsdl.x2005.x11.jsdl.RangeValueType getOrCreateIndividualCPUCount(JobDefinitionType value) {
ResourcesType jobResources = getOrCreateResources(value);
if (!jobResources.isSetIndividualCPUCount()) {
jobResources.addNewIndividualCPUCount();
}
return jobResources.getIndividualCPUCount();
}
public static org.ggf.schemas.jsdl.x2005.x11.jsdl.RangeValueType getOrCreateIndividualCPUSpeed(JobDefinitionType value) {
ResourcesType jobResources = getOrCreateResources(value);
if (!jobResources.isSetIndividualCPUSpeed()) {
jobResources.addNewIndividualCPUSpeed();
}
return jobResources.getIndividualCPUSpeed();
}
public static org.ggf.schemas.jsdl.x2005.x11.jsdl.RangeValueType getOrCreateIndividualCPUTime(JobDefinitionType value) {
ResourcesType jobResources = getOrCreateResources(value);
if ( !jobResources.isSetIndividualCPUTime() ) {
jobResources.addNewIndividualCPUTime();
}
return jobResources.getIndividualCPUTime();
}
public static org.ggf.schemas.jsdl.x2005.x11.jsdl.RangeValueType getOrCreateIndividualDiskSpace(JobDefinitionType value) {
ResourcesType jobResources = getOrCreateResources(value);
if (!jobResources.isSetIndividualDiskSpace()) {
jobResources.addNewIndividualDiskSpace();
}
return jobResources.getIndividualDiskSpace();
}
public static org.ggf.schemas.jsdl.x2005.x11.jsdl.RangeValueType getOrCreateIndividualPhysicalMemory(JobDefinitionType value) {
ResourcesType jobResources = getOrCreateResources(value);
if (!jobResources.isSetIndividualPhysicalMemory()) {
jobResources.addNewIndividualPhysicalMemory();
}
return jobResources.getIndividualPhysicalMemory();
}
public static JobDescriptionType getOrCreateJobDescription(JobDefinitionType value) {
if (value.getJobDescription() == null) {
return value.addNewJobDescription();
}
return value.getJobDescription();
}
public static JobIdentificationType getOrCreateJobIdentification(JobDefinitionType value) {
JobDescriptionType descr = getOrCreateJobDescription(value);
if (descr.getJobIdentification() == null) {
return descr.addNewJobIdentification();
}
return descr.getJobIdentification();
}
public static OperatingSystemType getOrCreateOperatingSystem(JobDefinitionType value)
{
ResourcesType jobResources = getOrCreateResources(value);
if(!jobResources.isSetOperatingSystem()) {
jobResources.addNewOperatingSystem();
}
return jobResources.getOperatingSystem();
}
public static ResourcesType getOrCreateResources(JobDefinitionType value) {
JobDescriptionType jobDescr = getOrCreateJobDescription(value);
if (!jobDescr.isSetResources()) {
jobDescr.addNewResources();
}
return jobDescr.getResources();
}
public static org.ggf.schemas.jsdl.x2005.x11.jsdl.RangeValueType getOrCreateTotalCPUCount(JobDefinitionType value) {
ResourcesType jobResources = getOrCreateResources(value);
if ( !jobResources.isSetTotalCPUCount() ) {
jobResources.addNewTotalCPUCount();
}
return jobResources.getTotalCPUCount();
}
public static org.ggf.schemas.jsdl.x2005.x11.jsdl.RangeValueType getOrCreateTotalResourceCount(JobDefinitionType value) {
ResourcesType jobResources = getOrCreateResources(value);
if ( !jobResources.isSetTotalResourceCount())
{
jobResources.addNewTotalResourceCount();
}
return jobResources.getTotalResourceCount();
}
public static POSIXApplicationType getOrCreatePOSIXApplication(JobDefinitionType value) {
ApplicationType application = getOrCreateApplication(value);
if(getHPCProfileApplication(value) != null){
//TODO handle: not creating POSIX element if HPCProfile already exists
return getPOSIXApplication(value);
}
if (getPOSIXApplication(value) == null) {
XmlCursor acursor = application.newCursor();
acursor.toEndToken();
acursor.insertElement(POSIX_APPLICATION);
acursor.dispose();
}
return getPOSIXApplication(value);
}
public static SPMDApplicationType getOrCreateSPMDApplication(JobDefinitionType value) {
ApplicationType application = getOrCreateApplication(value);
if (getSPMDApplication(value) == null) {
XmlCursor acursor = application.newCursor();
acursor.toEndToken();
acursor.insertElement(SPMD_APPLICATION);
acursor.dispose();
}
return getSPMDApplication(value);
}
public static SPMDApplicationType getSPMDApplication(JobDefinitionType value) {
if (value != null &&
value.getJobDescription() != null &&
value.getJobDescription().isSetApplication() ) {
XmlCursor acursor = value.getJobDescription().getApplication().newCursor();
if (acursor.toFirstChild()) {
do {
if(acursor.getName().equals(SPMD_APPLICATION)) {
XmlObject result = acursor.getObject();
acursor.dispose();
return (SPMDApplicationType) result;
}
} while (acursor.toNextSibling());
acursor.dispose();
return null;
} else {
acursor.dispose();
return null;
}
} else {
return null;
}
}
public static POSIXApplicationType getPOSIXApplication(JobDefinitionType value) {
if (value != null &&
value.getJobDescription() != null &&
value.getJobDescription().isSetApplication() ) {
XmlCursor acursor = value.getJobDescription().getApplication().newCursor();
if (acursor.toFirstChild()) {
do {
if(acursor.getName().equals(POSIX_APPLICATION)) {
XmlObject result = acursor.getObject();
acursor.dispose();
return (POSIXApplicationType) result;
}
} while (acursor.toNextSibling());
acursor.dispose();
return null;
} else {
acursor.dispose();
return null;
}
} else {
return null;
}
}
public static HPCProfileApplicationType getOrCreateHPCProfileApplication(JobDefinitionType value) {
ApplicationType application = getOrCreateApplication(value);
if(getPOSIXApplication(value) != null){
//TODO handle: creating HPC element if POSIX already exists
return getHPCProfileApplication(value);
}
if (getHPCProfileApplication(value) == null) {
XmlCursor acursor = application.newCursor();
acursor.toEndToken();
acursor.insertElement(HPC_PROFILE_APPLICATION);
acursor.dispose();
}
return getHPCProfileApplication(value);
}
public static HPCProfileApplicationType getHPCProfileApplication(JobDefinitionType value) {
if (value != null &&
value.getJobDescription() != null &&
value.getJobDescription().isSetApplication() ) {
XmlCursor acursor = value.getJobDescription().getApplication().newCursor();
if (acursor.toFirstChild()) {
do {
if(acursor.getName().equals(HPC_PROFILE_APPLICATION)) {
XmlObject result = acursor.getObject();
acursor.dispose();
return (HPCProfileApplicationType) result;
}
} while (acursor.toNextSibling());
acursor.dispose();
return null;
} else {
acursor.dispose();
return null;
}
} else {
return null;
}
}
public static RangeValueType getTotalCPUCountRequirements(JobDefinitionType value) {
if(value != null && value.getJobDescription() != null && value.getJobDescription().isSetResources() &&
value.getJobDescription().getResources().isSetTotalCPUCount()){
return toU6RangeValue(value.getJobDescription().getResources().getTotalCPUCount());
}
else
return null;
}
public static RangeValueType getTotalResourceCountRequirements(JobDefinitionType value) {
if(value != null && value.getJobDescription() != null && value.getJobDescription().isSetResources() &&
value.getJobDescription().getResources().isSetTotalResourceCount()){
return toU6RangeValue(value.getJobDescription().getResources().getTotalResourceCount());
}
else
return null;
}
public static RangeValueType toU6RangeValue(org.ggf.schemas.jsdl.x2005.x11.jsdl.RangeValueType jsdlType) {
RangeValueType result = new RangeValueType();
if(jsdlType.getExactArray().length > 0){
result.setExact(jsdlType.getExactArray(0).getDoubleValue());
}
if(jsdlType.isSetLowerBoundedRange()){
result.setLowerBound(jsdlType.getLowerBoundedRange().getDoubleValue());
}
if(jsdlType.isSetUpperBoundedRange()){
result.setUpperBound(jsdlType.getUpperBoundedRange().getDoubleValue());
}
return result;
}
public static void setCPUArchitectureRequirements(JobDefinitionType value, ProcessorRequirement cpuArchitecture) {
if(cpuArchitecture == null || cpuArchitecture.getValue() == null) return;
CPUArchitectureType cpuArch = getOrCreateCPUArchitecture(value);
cpuArch.setCPUArchitectureName(ProcessorArchitectureEnumeration.Enum.forString(cpuArchitecture.getValue()));
}
public static void setIndividualCPUCountRequirements(JobDefinitionType value, RangeValueType cpuCount) {
org.ggf.schemas.jsdl.x2005.x11.jsdl.RangeValueType individualCPUCount = getOrCreateIndividualCPUCount(value);
setRangeValue(cpuCount, individualCPUCount);
}
public static void setIndividualCPUSpeedRequirements(JobDefinitionType value, RangeValueType cpuSpeed) {
org.ggf.schemas.jsdl.x2005.x11.jsdl.RangeValueType individualCPUSpeed = getOrCreateIndividualCPUSpeed(value);
setRangeValue(cpuSpeed, individualCPUSpeed);
}
public static void setIndividualCPUTimeRequirements(JobDefinitionType value, RangeValueType cpuTime) {
org.ggf.schemas.jsdl.x2005.x11.jsdl.RangeValueType cpuIndividualTime = getOrCreateIndividualCPUTime(value);
setRangeValue(cpuTime, cpuIndividualTime);
}
public static void setIndividualDiskSpaceRequirements(JobDefinitionType value, RangeValueType diskSpace) {
org.ggf.schemas.jsdl.x2005.x11.jsdl.RangeValueType individualDiskSpace = getOrCreateIndividualDiskSpace(value);
setRangeValue(diskSpace, individualDiskSpace);
}
public static void setIndividualPhysicalMemoryRequirements(JobDefinitionType value, RangeValueType physicalMemory) {
org.ggf.schemas.jsdl.x2005.x11.jsdl.RangeValueType individualPhysicalMemory = getOrCreateIndividualPhysicalMemory(value);
setRangeValue(physicalMemory, individualPhysicalMemory);
}
public static void setName(JobDefinitionType value, String name) {
getOrCreateJobIdentification(value).setJobName(name);
}
public static void setOperatingSystemRequirements(JobDefinitionType value, OSRequirement osType) {
if(osType == null || osType.getOSType() == null) return;
OperatingSystemType os_Type = getOrCreateOperatingSystem(value);
OperatingSystemTypeType ostt = os_Type.addNewOperatingSystemType();
ostt.setOperatingSystemName(OperatingSystemTypeEnumeration.Enum.forString(osType.getOSType().getValue()));
if(osType.getOSVersion() != null)
{
os_Type.setOperatingSystemVersion(osType.getOSVersion());
}
}
public static void setRangeValue(RangeValueType u6Type, org.ggf.schemas.jsdl.x2005.x11.jsdl.RangeValueType jsdlType) {
Double exact = u6Type.getExact();
Double epsilon = u6Type.getEpsilon();
Double lower = u6Type.getLowerBound();
Double upper = u6Type.getUpperBound();
if(lower.isNaN() && upper.isNaN())
{
ExactType exactType = jsdlType.getExactArray().length > 0 ? jsdlType.getExactArray(0) : jsdlType.addNewExact();
exactType.setDoubleValue(exact);
if(!epsilon.isNaN() && epsilon != 0)
{
exactType.setEpsilon(epsilon);
}
}
else
{
if(!lower.isNaN())
{
BoundaryType lowerBound = jsdlType.isSetLowerBoundedRange() ? jsdlType.getLowerBoundedRange() : jsdlType.addNewLowerBoundedRange();
lowerBound.setDoubleValue(lower);
lowerBound.setExclusiveBound(!u6Type.isIncludeLowerBound());
}
if(!upper.isNaN())
{
BoundaryType upperBound = jsdlType.isSetUpperBoundedRange() ? jsdlType.getUpperBoundedRange() : jsdlType.addNewUpperBoundedRange();
upperBound.setDoubleValue(upper);
upperBound.setExclusiveBound(!u6Type.isIncludeUpperBound());
}
}
}
public static void setTotalCPUCountRequirements(JobDefinitionType value, RangeValueType cpuCount) {
org.ggf.schemas.jsdl.x2005.x11.jsdl.RangeValueType cpuTotalCount = getOrCreateTotalCPUCount(value);
setRangeValue(cpuCount, cpuTotalCount);
}
public static void setTotalResourceCountRequirements(JobDefinitionType value, RangeValueType resourceCount) {
org.ggf.schemas.jsdl.x2005.x11.jsdl.RangeValueType totalCount = getOrCreateTotalResourceCount(value);
setRangeValue(resourceCount, totalCount);
}
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