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Avro command line tools and utilities
/*
* Licensed to the Apache Software Foundation (ASF) under one
* or more contributor license agreements. See the NOTICE file
* distributed with this work for additional information
* regarding copyright ownership. The ASF licenses this file
* to you under the Apache License, Version 2.0 (the
* "License"); you may not use this file except in compliance
* with the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package org.apache.avro.tool;
import java.io.IOException;
import java.io.InputStream;
import java.io.OutputStream;
import java.io.PrintStream;
import java.util.List;
import joptsimple.OptionParser;
import joptsimple.OptionSet;
import joptsimple.OptionSpec;
import org.apache.avro.Schema;
import org.apache.avro.file.CodecFactory;
import org.apache.avro.file.DataFileConstants;
import org.apache.avro.file.DataFileStream;
import org.apache.avro.file.DataFileWriter;
import org.apache.avro.generic.GenericDatumReader;
import org.apache.avro.generic.GenericDatumWriter;
import org.apache.avro.generic.GenericRecord;
import org.apache.hadoop.fs.FSDataInputStream;
import org.apache.hadoop.fs.Path;
/** Tool to extract samples from an Avro data file. */
public class CatTool implements Tool {
private long totalCopied;
private double sampleCounter;
private GenericRecord reuse;
private DataFileStream reader;
private DataFileWriter writer;
private Schema schema;
private List inFiles;
private int currentInput;
@Override
public int run(InputStream in, PrintStream out, PrintStream err, List args) throws Exception {
OptionParser optParser = new OptionParser();
OptionSpec offsetOpt = optParser.accepts("offset", "offset for reading input").withRequiredArg()
.ofType(Long.class).defaultsTo(new Long(0));
OptionSpec limitOpt = optParser.accepts("limit", "maximum number of records in the outputfile")
.withRequiredArg().ofType(Long.class).defaultsTo(Long.MAX_VALUE);
OptionSpec fracOpt = optParser.accepts("samplerate", "rate at which records will be collected")
.withRequiredArg().ofType(Double.class).defaultsTo(new Double(1));
OptionSet opts = optParser.parse(args.toArray(new String[0]));
List nargs = (List) opts.nonOptionArguments();
if (nargs.size() < 2) {
printHelp(out);
return 0;
}
inFiles = Util.getFiles(nargs.subList(0, nargs.size() - 1));
System.out.println("List of input files:");
for (Path p : inFiles) {
System.out.println(p);
}
currentInput = -1;
nextInput();
OutputStream output = out;
String lastArg = nargs.get(nargs.size() - 1);
if (nargs.size() > 1 && !lastArg.equals("-")) {
output = Util.createFromFS(lastArg);
}
writer = new DataFileWriter<>(new GenericDatumWriter<>());
String codecName = reader.getMetaString(DataFileConstants.CODEC);
CodecFactory codec = (codecName == null) ? CodecFactory.fromString(DataFileConstants.NULL_CODEC)
: CodecFactory.fromString(codecName);
writer.setCodec(codec);
for (String key : reader.getMetaKeys()) {
if (!DataFileWriter.isReservedMeta(key)) {
writer.setMeta(key, reader.getMeta(key));
}
}
writer.create(schema, output);
long offset = opts.valueOf(offsetOpt);
long limit = opts.valueOf(limitOpt);
double samplerate = opts.valueOf(fracOpt);
sampleCounter = 1;
totalCopied = 0;
reuse = null;
if (limit < 0) {
System.out.println("limit has to be non-negative");
this.printHelp(out);
return 1;
}
if (offset < 0) {
System.out.println("offset has to be non-negative");
this.printHelp(out);
return 1;
}
if (samplerate < 0 || samplerate > 1) {
System.out.println("samplerate has to be a number between 0 and 1");
this.printHelp(out);
return 1;
}
skip(offset);
writeRecords(limit, samplerate);
System.out.println(totalCopied + " records written.");
writer.flush();
writer.close();
Util.close(out);
return 0;
}
private void nextInput() throws IOException {
currentInput++;
Path path = inFiles.get(currentInput);
FSDataInputStream input = new FSDataInputStream(Util.openFromFS(path));
reader = new DataFileStream<>(input, new GenericDatumReader<>());
if (schema == null) { // if this is the first file, the schema gets saved
schema = reader.getSchema();
} else if (!schema.equals(reader.getSchema())) { // subsequent files have to have equal schemas
throw new IOException("schemas dont match");
}
}
private boolean hasNextInput() {
return inFiles.size() > (currentInput + 1);
}
/** skips a number of records from the input */
private long skip(long skip) throws IOException {
long skipped = 0;
while (0 < skip && reader.hasNext()) {
reader.next(reuse);
skip--;
skipped++;
}
if ((0 < skip) && hasNextInput()) { // goto next file
nextInput();
skipped = skipped + skip(skip);
}
return skipped;
}
/**
* writes records with the given samplerate The record at position offset is
* guaranteed to be taken
*/
private long writeRecords(long count, double samplerate) throws IOException {
long written = 0;
while (written < count && reader.hasNext()) {
reuse = reader.next(reuse);
sampleCounter = sampleCounter + samplerate;
if (sampleCounter >= 1) {
writer.append(reuse);
written++;
sampleCounter--;
}
}
totalCopied = totalCopied + written;
if (written < count && hasNextInput()) { // goto next file
nextInput();
written = written + writeRecords(count - written, samplerate);
}
return written;
}
private void printHelp(PrintStream out) {
out.println("cat --offset --limit --samplerate [input-files...] output-file");
out.println();
out.println("extracts records from a list of input files into a new file.");
out.println("--offset start of the extract");
out.println("--limit maximum number of records in the output file.");
out.println("--samplerate rate at which records will be collected");
out.println("A dash ('-') can be given to direct output to stdout");
}
@Override
public String getName() {
return "cat";
}
@Override
public String getShortDescription() {
return "Extracts samples from files";
}
}