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/**
 * Licensed to the Apache Software Foundation (ASF) under one
 * or more contributor license agreements.  See the NOTICE file
 * distributed with this work for additional information
 * regarding copyright ownership.  The ASF licenses this file
 * to you under the Apache License, Version 2.0 (the
 * "License"); you may not use this file except in compliance
 * with the License.  You may obtain a copy of the License at
 *
 *   http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing,
 * software distributed under the License is distributed on an
 * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
 * KIND, either express or implied.  See the License for the
 * specific language governing permissions and limitations
 * under the License.
 */
package org.apache.ctakes.ytex.kernel.model;

import java.io.Serializable;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;

/**
 * A directed graph that spans a subset of the UMLS connecting concepts with
 * IS-A links.
 * 
 * @author vijay
 */
public class ConceptGraph implements Serializable {
	/**
	 * 
	 */
	private static final long serialVersionUID = 1L;
	private List conceptList = new ArrayList();
	private transient Map conceptMap = new HashMap();
	private short depthMax = 0;
	private double intrinsicICMax = 0d;
	private String root = null;

	public ConcRel addConcept(String conceptID) {
		// get position at which concept would be added to list
		int nIndex = conceptList.size();
		// add concept to conceptMap
		ConcRel cr = new ConcRel(conceptID, nIndex);
		conceptMap.put(conceptID, cr);
		// add concept to list
		conceptList.add(cr);
		return cr;
	}

	public List getConceptList() {
		return conceptList;
	}

	public Map getConceptMap() {
		return conceptMap;
	}

	public short getDepthMax() {
		return depthMax;
	}

	public double getIntrinsicICMax() {
		return intrinsicICMax;
	}

	public String getRoot() {
		return root;
	}

	public void setConceptList(List conceptList) {
		this.conceptList = conceptList;
	}

	public void setConceptMap(Map conceptMap) {
		this.conceptMap = conceptMap;
	}

	public void setDepthMax(short depthMax) {
		this.depthMax = depthMax;
	}

	public void setIntrinsicICMax(double intrinsicICMax) {
		this.intrinsicICMax = intrinsicICMax;
	}

	public void setRoot(String root) {
		this.root = root;
	}

}