org.apache.drill.exec.util.filereader.BufferedDirectBufInputStream Maven / Gradle / Ivy
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* Licensed to the Apache Software Foundation (ASF) under one
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* distributed with this work for additional information
* regarding copyright ownership. The ASF licenses this file
* to you under the Apache License, Version 2.0 (the
* "License"); you may not use this file except in compliance
* with the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package org.apache.drill.exec.util.filereader;
import org.apache.drill.shaded.guava.com.google.common.base.Preconditions;
import org.apache.drill.shaded.guava.com.google.common.base.Stopwatch;
import io.netty.buffer.DrillBuf;
import org.apache.drill.exec.memory.BufferAllocator;
import org.apache.parquet.hadoop.util.HadoopStreams;
import java.io.Closeable;
import java.io.IOException;
import java.io.InputStream;
import java.nio.ByteBuffer;
import java.util.concurrent.TimeUnit;
/**
* BufferedDirectBufInputStream reads from the
* underlying InputStream in blocks of data, into an
* internal buffer. The internal buffer is a direct memory backed
* buffer. The implementation is similar to the BufferedInputStream
* class except that the internal buffer is a Drillbuf and
* not a byte array. The mark and reset methods of the underlying
* InputStreamare not supported.
*/
public class BufferedDirectBufInputStream extends DirectBufInputStream implements Closeable {
private static final org.slf4j.Logger logger =
org.slf4j.LoggerFactory.getLogger(BufferedDirectBufInputStream.class);
private static final int DEFAULT_BUFFER_SIZE = 8192 * 1024; // 8 MiB
private static final int DEFAULT_TEMP_BUFFER_SIZE = 8192; // 8 KiB
private static final int SMALL_BUFFER_SIZE = 256 * 1024; // 256 KiB
/**
* The internal buffer to keep data read from the underlying inputStream.
* internalBuffer[0] through internalBuffer[count-1]
* contains data read from the underlying input stream.
*/
protected volatile DrillBuf internalBuffer; // the internal buffer
/**
* The number of valid bytes in internalBuffer.
* count is always in the range [0,internalBuffer.capacity]
* internalBuffer[count-1] is the last valid byte in the buffer.
*/
protected int count;
/**
* The current read position in the buffer; the index of the next
* character to be read from the internalBuffer array.
*
* This value is always in the range [0,count].
* If curPosInBuffer is equal to count> then we have read
* all the buffered data and the next read (or skip) will require more data to be read
* from the underlying input stream.
*/
protected int curPosInBuffer;
protected long curPosInStream; // current offset in the input stream
private int bufSize;
private volatile DrillBuf tempBuffer; // a temp Buffer for use by read(byte[] buf, int off, int len)
private DrillBuf getBuf() throws IOException {
checkInputStreamState();
if (internalBuffer == null) {
throw new IOException("Input stream is closed.");
}
return this.internalBuffer;
}
/**
* Creates a BufferedDirectBufInputStream
* with the default (8 MiB) buffer size.
*/
public BufferedDirectBufInputStream(InputStream in, BufferAllocator allocator, String id,
long startOffset, long totalByteSize, boolean enforceTotalByteSize, boolean enableHints) {
this(in, allocator, id, startOffset, totalByteSize, DEFAULT_BUFFER_SIZE, enforceTotalByteSize, enableHints);
}
/**
* Creates a BufferedDirectBufInputStream
* with the specified buffer size.
*/
public BufferedDirectBufInputStream(InputStream in, BufferAllocator allocator, String id,
long startOffset, long totalByteSize, int bufSize, boolean enforceTotalByteSize, boolean enableHints) {
super(in, allocator, id, startOffset, totalByteSize, enforceTotalByteSize, enableHints);
Preconditions.checkArgument(bufSize >= 0);
// We make the buffer size the smaller of the buffer Size parameter or the total Byte Size
// rounded to next highest power of two
int bSize = Math.min(bufSize, Math.toIntExact(totalByteSize));
// round up to next power of 2
bSize--;
bSize |= bSize >>> 1;
bSize |= bSize >>> 2;
bSize |= bSize >>> 4;
bSize |= bSize >>> 8;
bSize |= bSize >>> 16;
bSize++;
this.bufSize = bSize;
}
@Override public void init() throws UnsupportedOperationException, IOException {
super.init();
this.internalBuffer = this.allocator.buffer(this.bufSize);
this.tempBuffer = this.allocator.buffer(DEFAULT_TEMP_BUFFER_SIZE);
}
private DrillBuf reallocBuffer(int newSize ){
this.internalBuffer.release();
this.bufSize = newSize;
this.internalBuffer = this.allocator.buffer(this.bufSize);
logger.debug("Internal buffer resized to {}", newSize);
return this.internalBuffer;
}
/**
* Read one more block from the underlying stream.
* Assumes we have reached the end of buffered data
* Assumes it is being called from a synchronized block.
* returns number of bytes read or -1 if EOF
*/
private int getNextBlock() throws IOException {
Preconditions.checkState(this.curPosInBuffer >= this.count,
"Internal error: Buffered stream has not been consumed and trying to read more from underlying stream");
checkInputStreamState();
DrillBuf buffer = getBuf();
buffer.clear();
this.count = this.curPosInBuffer = 0;
if(logger.isTraceEnabled()) {
logger.trace(
"PERF: Disk read start. {}, StartOffset: {}, TotalByteSize: {}, BufferSize: {}, Count: {}, " + "CurPosInStream: {}, CurPosInBuffer: {}", this.streamId, this.startOffset,
this.totalByteSize, this.bufSize, this.count, this.curPosInStream, this.curPosInBuffer);
}
Stopwatch timer = Stopwatch.createStarted();
int bytesToRead = 0;
// We *cannot* rely on the totalByteSize being correct because
// metadata for Parquet files is incorrect (sometimes). So we read
// beyond the totalByteSize parameter. However, to prevent ourselves from reading too
// much data, we reduce the size of the buffer, down to 64KiB.
if(enforceTotalByteSize) {
bytesToRead = (buffer.capacity() >= (totalByteSize + startOffset - curPosInStream)) ?
(int) (totalByteSize + startOffset - curPosInStream ):
buffer.capacity();
} else {
if (buffer.capacity() >= (totalByteSize + startOffset - curPosInStream)) {
if (buffer.capacity() > SMALL_BUFFER_SIZE) {
buffer = this.reallocBuffer(SMALL_BUFFER_SIZE);
}
}
bytesToRead = buffer.capacity();
}
ByteBuffer directBuffer = buffer.nioBuffer(curPosInBuffer, bytesToRead);
// The DFS can return *more* bytes than requested if the capacity of the buffer is greater.
// i.e 'n' can be greater than bytes requested which is pretty stupid and violates
// the API contract; but we still have to deal with it. So we make sure the size of the
// buffer is exactly the same as the number of bytes requested
int bytesRead = -1;
int nBytes = 0;
if (bytesToRead > 0) {
try {
nBytes = HadoopStreams.wrap(getInputStream()).read(directBuffer);
} catch (Exception e) {
logger.error("Error reading from stream {}. Error was : {}", this.streamId, e.getMessage());
throw new IOException((e));
}
if (nBytes > 0) {
buffer.writerIndex(nBytes);
this.count = nBytes + this.curPosInBuffer;
this.curPosInStream = getInputStream().getPos();
bytesRead = nBytes;
if(logger.isTraceEnabled()) {
logger.trace(
"PERF: Disk read complete. {}, StartOffset: {}, TotalByteSize: {}, BufferSize: {}, BytesRead: {}, Count: {}, "
+ "CurPosInStream: {}, CurPosInBuffer: {}, Time: {} ms", this.streamId, this.startOffset,
this.totalByteSize, this.bufSize, bytesRead, this.count, this.curPosInStream, this.curPosInBuffer,
((double) timer.elapsed(TimeUnit.MICROSECONDS)) / 1000);
}
}
}
return this.count - this.curPosInBuffer;
}
// Reads from the internal Buffer into the output buffer
// May read less than the requested size if the remaining data in the buffer
// is less than the requested amount
private int readInternal(DrillBuf buf, int off, int len) throws IOException {
// check how many bytes are available in the buffer.
int bytesAvailable = this.count - this.curPosInBuffer;
if (bytesAvailable <= 0) {
// read more
int bytesRead = getNextBlock();
if (bytesRead <= 0) { // End of stream
return -1;
}
}
bytesAvailable = this.count - this.curPosInBuffer;
//copy into output buffer
int copyBytes = Math.min(bytesAvailable, len);
getBuf().getBytes(curPosInBuffer, buf, off, copyBytes);
buf.writerIndex(off + copyBytes);
this.curPosInBuffer += copyBytes;
return copyBytes;
}
// Reads from the internal Buffer into the output buffer
// May read less than the requested size if the remaining data in the buffer
// is less than the requested amount
// Does not make a copy but returns a slice of the internal buffer.
// Returns null if end of stream is reached
private DrillBuf readInternal(int off, int len) throws IOException {
// check how many bytes are available in the buffer.
int bytesAvailable = this.count - this.curPosInBuffer;
if (bytesAvailable <= 0) {
// read more
int bytesRead = getNextBlock();
if (bytesRead <= 0) { // End of stream
return null;
}
}
bytesAvailable = this.count - this.curPosInBuffer;
// return a slice as the output
int bytesToRead = Math.min(bytesAvailable, len);
DrillBuf newBuf = this.getBuf().slice(off, bytesToRead);
newBuf.retain();
return newBuf;
}
/**
* Implements the read method of InputStream.
* returns one more byte or -1 if end of stream is reached.
*/
public synchronized int read() throws IOException {
if (this.count - this.curPosInBuffer <= 0) {
int bytesRead = getNextBlock();
// reached end of stream
if (bytesRead <= 0) {
return -1;
}
}
this.curPosInBuffer++;
return getBuf().nioBuffer().get() & 0xff;
}
/**
* Has the same contract as {@link java.io.InputStream#read(byte[], int, int)}
* Except with DrillBuf
*/
public synchronized int read(DrillBuf buf, int off, int len) throws IOException {
checkInputStreamState();
Preconditions.checkArgument((off >= 0) && (len >= 0) && (buf.capacity()) >= (off + len));
int bytesRead = 0;
do {
int readStart = off + bytesRead;
int lenToRead = len - bytesRead;
int nRead = readInternal(buf, readStart, lenToRead);
if (nRead <= 0) {// if End of stream
if (bytesRead == 0) { // no bytes read at all
return -1;
} else {
return bytesRead;
}
} else {
bytesRead += nRead;
//TODO: Uncomment this when the InputStream.available() call is fixed.
// If the last read caused us to reach the end of stream
// we are done.
//InputStream input = in;
//if (input != null && input.available() <= 0) {
// return bytesRead;
//}
}
} while (bytesRead < len);
return bytesRead;
}
@Override public int read(byte[] b) throws IOException {
return b.length == 1 ? read() : read(b, 0, b.length);
}
@Override public int read(byte[] buf, int off, int len) throws IOException {
checkInputStreamState();
Preconditions.checkArgument((off >= 0) && (len >= 0) && (buf.length) >= (off + len));
int bytesRead = 0;
if (len == 0) {
return 0;
}
DrillBuf byteBuf;
if (len <= DEFAULT_TEMP_BUFFER_SIZE) {
byteBuf = tempBuffer;
} else {
byteBuf = this.allocator.buffer(len);
}
do {
int readStart = off + bytesRead;
int lenToRead = len - bytesRead;
int nRead = readInternal(byteBuf, readStart, lenToRead);
if (nRead <= 0) {// if End of stream
if (bytesRead == 0) { // no bytes read at all
return -1;
} else {
return bytesRead;
}
} else {
byteBuf.nioBuffer().get(buf, off + bytesRead, nRead);
byteBuf.clear();
bytesRead += nRead;
}
} while (bytesRead < len);
if (len > DEFAULT_TEMP_BUFFER_SIZE) {
byteBuf.release();
}
return bytesRead;
}
/**
* Has the same contract as {@link java.io.InputStream#skip(long)}
* Skips upto the next n bytes.
* Skip may return with less than n bytes skipped
*/
@Override public synchronized long skip(long n) throws IOException {
checkInputStreamState();
long bytesAvailable = this.count - this.curPosInBuffer;
long bytesSkipped = 0;
if (n <= 0) {
return 0;
}
if (bytesAvailable <= 0) {
checkInputStreamState();
bytesAvailable = getNextBlock();
if (bytesAvailable <= 0) { // End of stream
return 0;
}
}
bytesSkipped = Math.min(bytesAvailable, n);
this.curPosInBuffer += Math.toIntExact(bytesSkipped);
return bytesSkipped;
}
@Override public synchronized int available() throws IOException {
checkInputStreamState();
int bytesAvailable = this.count - this.curPosInBuffer;
int underlyingAvailable = getInputStream().available();
int available = bytesAvailable + underlyingAvailable;
if (available < 0) { // overflow
return Integer.MAX_VALUE;
}
return available;
}
@Override public synchronized void mark(int readlimit) {
throw new UnsupportedOperationException("Mark/reset is not supported.");
}
@Override public synchronized void reset() throws IOException {
throw new UnsupportedOperationException("Mark/reset is not supported.");
}
@Override public boolean markSupported() {
return false;
}
/*
Returns the current position from the beginning of the underlying input stream
*/
public long getPos() throws IOException {
return curPosInBuffer + startOffset;
}
@Override public synchronized void close() throws IOException {
DrillBuf buffer;
InputStream inp;
synchronized (this) {
try {
if ((inp = in) != null) {
in = null;
inp.close();
}
} finally {
if ((buffer = this.internalBuffer) != null) {
this.internalBuffer = null;
buffer.release();
}
if ((buffer = this.tempBuffer) != null) {
this.tempBuffer = null;
buffer.release();
}
}
}
}
/**
* Uncomment For testing Parquet files that are too big to use in unit tests
* @param args
*/
/*
public static void main(String[] args) {
final DrillConfig config = DrillConfig.create();
final BufferAllocator allocator = RootAllocatorFactory.newRoot(config);
final Configuration dfsConfig = new Configuration();
String fileName = args[0];
Path filePath = new Path(fileName);
final int BUFSZ = 8 * 1024 * 1024;
try {
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