org.apache.hadoop.hbase.regionserver.CompactingMemStore Maven / Gradle / Ivy
Go to download
Show more of this group Show more artifacts with this name
Show all versions of hbase-server Show documentation
Show all versions of hbase-server Show documentation
Server functionality for HBase
/**
*
* Licensed to the Apache Software Foundation (ASF) under one
* or more contributor license agreements. See the NOTICE file
* distributed with this work for additional information
* regarding copyright ownership. The ASF licenses this file
* to you under the Apache License, Version 2.0 (the
* "License"); you may not use this file except in compliance
* with the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package org.apache.hadoop.hbase.regionserver;
import org.apache.hadoop.hbase.shaded.com.google.common.annotations.VisibleForTesting;
import java.io.IOException;
import java.util.ArrayList;
import java.util.List;
import java.util.concurrent.ThreadPoolExecutor;
import java.util.concurrent.atomic.AtomicBoolean;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import org.apache.hadoop.conf.Configuration;
import org.apache.hadoop.hbase.Cell;
import org.apache.hadoop.hbase.CellComparator;
import org.apache.hadoop.hbase.HConstants;
import org.apache.hadoop.hbase.MemoryCompactionPolicy;
import org.apache.yetus.audience.InterfaceAudience;
import org.apache.hadoop.hbase.util.Bytes;
import org.apache.hadoop.hbase.util.ClassSize;
import org.apache.hadoop.hbase.util.EnvironmentEdgeManager;
import org.apache.hadoop.hbase.wal.WAL;
/**
* A memstore implementation which supports in-memory compaction.
* A compaction pipeline is added between the active set and the snapshot data structures;
* it consists of a list of kv-sets that are subject to compaction.
* Like the snapshot, all pipeline components are read-only; updates only affect the active set.
* To ensure this property we take advantage of the existing blocking mechanism -- the active set
* is pushed to the pipeline while holding the region's updatesLock in exclusive mode.
* Periodically, a compaction is applied in the background to all pipeline components resulting
* in a single read-only component. The ``old'' components are discarded when no scanner is reading
* them.
*/
@InterfaceAudience.Private
public class CompactingMemStore extends AbstractMemStore {
// The external setting of the compacting MemStore behaviour
public static final String COMPACTING_MEMSTORE_TYPE_KEY =
"hbase.hregion.compacting.memstore.type";
public static final String COMPACTING_MEMSTORE_TYPE_DEFAULT =
String.valueOf(MemoryCompactionPolicy.BASIC);
// The external setting of the compacting MemStore behaviour
public static final String COMPACTING_MEMSTORE_INDEX_KEY =
"hbase.hregion.compacting.memstore.index";
// usage of CellArrayMap is default, later it will be decided how to use CellChunkMap
public static final String COMPACTING_MEMSTORE_INDEX_DEFAULT =
String.valueOf(IndexType.ARRAY_MAP);
// Default fraction of in-memory-flush size w.r.t. flush-to-disk size
public static final String IN_MEMORY_FLUSH_THRESHOLD_FACTOR_KEY =
"hbase.memstore.inmemoryflush.threshold.factor";
private static final double IN_MEMORY_FLUSH_THRESHOLD_FACTOR_DEFAULT = 0.25;
private static final Log LOG = LogFactory.getLog(CompactingMemStore.class);
private HStore store;
private RegionServicesForStores regionServices;
private CompactionPipeline pipeline;
private MemStoreCompactor compactor;
private long inmemoryFlushSize; // the threshold on active size for in-memory flush
private final AtomicBoolean inMemoryFlushInProgress = new AtomicBoolean(false);
// inWalReplay is true while we are synchronously replaying the edits from WAL
private boolean inWalReplay = false;
@VisibleForTesting
private final AtomicBoolean allowCompaction = new AtomicBoolean(true);
private boolean compositeSnapshot = true;
/**
* Types of indexes (part of immutable segments) to be used after flattening,
* compaction, or merge are applied.
*/
public enum IndexType {
CSLM_MAP, // ConcurrentSkipLisMap
ARRAY_MAP, // CellArrayMap
CHUNK_MAP // CellChunkMap
}
private IndexType indexType = IndexType.ARRAY_MAP; // default implementation
public static final long DEEP_OVERHEAD = ClassSize.align( AbstractMemStore.DEEP_OVERHEAD
+ 7 * ClassSize.REFERENCE // Store, RegionServicesForStores, CompactionPipeline,
// MemStoreCompactor, inMemoryFlushInProgress, allowCompaction,
// indexType
+ Bytes.SIZEOF_LONG // inmemoryFlushSize
+ 2 * Bytes.SIZEOF_BOOLEAN // compositeSnapshot and inWalReplay
+ 2 * ClassSize.ATOMIC_BOOLEAN// inMemoryFlushInProgress and allowCompaction
+ CompactionPipeline.DEEP_OVERHEAD + MemStoreCompactor.DEEP_OVERHEAD);
public CompactingMemStore(Configuration conf, CellComparator c,
HStore store, RegionServicesForStores regionServices,
MemoryCompactionPolicy compactionPolicy) throws IOException {
super(conf, c);
this.store = store;
this.regionServices = regionServices;
this.pipeline = new CompactionPipeline(getRegionServices());
this.compactor = createMemStoreCompactor(compactionPolicy);
initInmemoryFlushSize(conf);
indexType = IndexType.valueOf(conf.get(CompactingMemStore.COMPACTING_MEMSTORE_INDEX_KEY,
CompactingMemStore.COMPACTING_MEMSTORE_INDEX_DEFAULT));
}
@VisibleForTesting
protected MemStoreCompactor createMemStoreCompactor(MemoryCompactionPolicy compactionPolicy) {
return new MemStoreCompactor(this, compactionPolicy);
}
private void initInmemoryFlushSize(Configuration conf) {
long memstoreFlushSize = getRegionServices().getMemStoreFlushSize();
int numStores = getRegionServices().getNumStores();
if (numStores <= 1) {
// Family number might also be zero in some of our unit test case
numStores = 1;
}
inmemoryFlushSize = memstoreFlushSize / numStores;
// multiply by a factor
double factor = conf.getDouble(IN_MEMORY_FLUSH_THRESHOLD_FACTOR_KEY,
IN_MEMORY_FLUSH_THRESHOLD_FACTOR_DEFAULT);
inmemoryFlushSize *= factor;
LOG.info("Setting in-memory flush size threshold to " + inmemoryFlushSize);
}
/**
* @return Total memory occupied by this MemStore. This won't include any size occupied by the
* snapshot. We assume the snapshot will get cleared soon. This is not thread safe and
* the memstore may be changed while computing its size. It is the responsibility of the
* caller to make sure this doesn't happen.
*/
@Override
public MemStoreSize size() {
MemStoreSizing memstoreSizing = new MemStoreSizing();
memstoreSizing.incMemStoreSize(this.active.keySize(), this.active.heapSize());
for (Segment item : pipeline.getSegments()) {
memstoreSizing.incMemStoreSize(item.keySize(), item.heapSize());
}
return memstoreSizing;
}
/**
* This method is called before the flush is executed.
* @return an estimation (lower bound) of the unflushed sequence id in memstore after the flush
* is executed. if memstore will be cleared returns {@code HConstants.NO_SEQNUM}.
*/
@Override
public long preFlushSeqIDEstimation() {
if(compositeSnapshot) {
return HConstants.NO_SEQNUM;
}
Segment segment = getLastSegment();
if(segment == null) {
return HConstants.NO_SEQNUM;
}
return segment.getMinSequenceId();
}
@Override
public boolean isSloppy() {
return true;
}
/**
* Push the current active memstore segment into the pipeline
* and create a snapshot of the tail of current compaction pipeline
* Snapshot must be cleared by call to {@link #clearSnapshot}.
* {@link #clearSnapshot(long)}.
* @return {@link MemStoreSnapshot}
*/
@Override
public MemStoreSnapshot snapshot() {
// If snapshot currently has entries, then flusher failed or didn't call
// cleanup. Log a warning.
if (!this.snapshot.isEmpty()) {
LOG.warn("Snapshot called again without clearing previous. " +
"Doing nothing. Another ongoing flush or did we fail last attempt?");
} else {
if (LOG.isDebugEnabled()) {
LOG.debug("FLUSHING TO DISK: region "
+ getRegionServices().getRegionInfo().getRegionNameAsString() + "store: "
+ getFamilyName());
}
stopCompaction();
pushActiveToPipeline(this.active);
snapshotId = EnvironmentEdgeManager.currentTime();
// in both cases whatever is pushed to snapshot is cleared from the pipeline
if (compositeSnapshot) {
pushPipelineToSnapshot();
} else {
pushTailToSnapshot();
}
}
return new MemStoreSnapshot(snapshotId, this.snapshot);
}
/**
* On flush, how much memory we will clear.
* @return size of data that is going to be flushed
*/
@Override
public MemStoreSize getFlushableSize() {
MemStoreSizing snapshotSizing = getSnapshotSizing();
if (snapshotSizing.getDataSize() == 0) {
// if snapshot is empty the tail of the pipeline (or everything in the memstore) is flushed
if (compositeSnapshot) {
snapshotSizing = pipeline.getPipelineSizing();
snapshotSizing.incMemStoreSize(this.active.keySize(), this.active.heapSize());
} else {
snapshotSizing = pipeline.getTailSizing();
}
}
return snapshotSizing.getDataSize() > 0 ? snapshotSizing
: new MemStoreSize(this.active.keySize(), this.active.heapSize());
}
@Override
protected long keySize() {
// Need to consider keySize of all segments in pipeline and active
long k = this.active.keySize();
for (Segment segment : this.pipeline.getSegments()) {
k += segment.keySize();
}
return k;
}
@Override
protected long heapSize() {
// Need to consider heapOverhead of all segments in pipeline and active
long h = this.active.heapSize();
for (Segment segment : this.pipeline.getSegments()) {
h += segment.heapSize();
}
return h;
}
@Override
public void updateLowestUnflushedSequenceIdInWAL(boolean onlyIfGreater) {
long minSequenceId = pipeline.getMinSequenceId();
if(minSequenceId != Long.MAX_VALUE) {
byte[] encodedRegionName = getRegionServices().getRegionInfo().getEncodedNameAsBytes();
byte[] familyName = getFamilyNameInBytes();
WAL WAL = getRegionServices().getWAL();
if (WAL != null) {
WAL.updateStore(encodedRegionName, familyName, minSequenceId, onlyIfGreater);
}
}
}
/**
* This message intends to inform the MemStore that next coming updates
* are going to be part of the replaying edits from WAL
*/
@Override
public void startReplayingFromWAL() {
inWalReplay = true;
}
/**
* This message intends to inform the MemStore that the replaying edits from WAL
* are done
*/
@Override
public void stopReplayingFromWAL() {
inWalReplay = false;
}
// the getSegments() method is used for tests only
@VisibleForTesting
@Override
protected List getSegments() {
List pipelineList = pipeline.getSegments();
List list = new ArrayList<>(pipelineList.size() + 2);
list.add(this.active);
list.addAll(pipelineList);
list.addAll(this.snapshot.getAllSegments());
return list;
}
// the following three methods allow to manipulate the settings of composite snapshot
public void setCompositeSnapshot(boolean useCompositeSnapshot) {
this.compositeSnapshot = useCompositeSnapshot;
}
public boolean isCompositeSnapshot() {
return this.compositeSnapshot;
}
public boolean swapCompactedSegments(VersionedSegmentsList versionedList, ImmutableSegment result,
boolean merge) {
// last true stands for updating the region size
return pipeline.swap(versionedList, result, !merge, true);
}
/**
* @param requesterVersion The caller must hold the VersionedList of the pipeline
* with version taken earlier. This version must be passed as a parameter here.
* The flattening happens only if versions match.
*/
public void flattenOneSegment(long requesterVersion) {
pipeline.flattenOneSegment(requesterVersion, indexType);
}
// setter is used only for testability
@VisibleForTesting
public void setIndexType() {
indexType = IndexType.valueOf(getConfiguration().get(
CompactingMemStore.COMPACTING_MEMSTORE_INDEX_KEY,
CompactingMemStore.COMPACTING_MEMSTORE_INDEX_DEFAULT));
}
public IndexType getIndexType() {
return indexType;
}
public boolean hasImmutableSegments() {
return !pipeline.isEmpty();
}
public VersionedSegmentsList getImmutableSegments() {
return pipeline.getVersionedList();
}
public long getSmallestReadPoint() {
return store.getSmallestReadPoint();
}
public HStore getStore() {
return store;
}
public String getFamilyName() {
return Bytes.toString(getFamilyNameInBytes());
}
@Override
/*
* Scanners are ordered from 0 (oldest) to newest in increasing order.
*/
public List getScanners(long readPt) throws IOException {
MutableSegment activeTmp = active;
List pipelineList = pipeline.getSegments();
List snapshotList = snapshot.getAllSegments();
long order = 1 + pipelineList.size() + snapshotList.size();
// The list of elements in pipeline + the active element + the snapshot segment
// The order is the Segment ordinal
List list = createList((int) order);
order = addToScanners(activeTmp, readPt, order, list);
order = addToScanners(pipelineList, readPt, order, list);
addToScanners(snapshotList, readPt, order, list);
return list;
}
@VisibleForTesting
protected List createList(int capacity) {
return new ArrayList<>(capacity);
}
/**
* Check whether anything need to be done based on the current active set size.
* The method is invoked upon every addition to the active set.
* For CompactingMemStore, flush the active set to the read-only memory if it's
* size is above threshold
*/
@Override
protected void checkActiveSize() {
if (shouldFlushInMemory()) {
/* The thread is dispatched to flush-in-memory. This cannot be done
* on the same thread, because for flush-in-memory we require updatesLock
* in exclusive mode while this method (checkActiveSize) is invoked holding updatesLock
* in the shared mode. */
InMemoryFlushRunnable runnable = new InMemoryFlushRunnable();
if (LOG.isTraceEnabled()) {
LOG.trace(
"Dispatching the MemStore in-memory flush for store " + store.getColumnFamilyName());
}
getPool().execute(runnable);
}
}
// internally used method, externally visible only for tests
// when invoked directly from tests it must be verified that the caller doesn't hold updatesLock,
// otherwise there is a deadlock
@VisibleForTesting
void flushInMemory() throws IOException {
// setting the inMemoryFlushInProgress flag again for the case this method is invoked
// directly (only in tests) in the common path setting from true to true is idempotent
inMemoryFlushInProgress.set(true);
try {
// Phase I: Update the pipeline
getRegionServices().blockUpdates();
try {
if (LOG.isDebugEnabled()) {
LOG.debug("IN-MEMORY FLUSH: Pushing active segment into compaction pipeline");
}
pushActiveToPipeline(this.active);
} finally {
getRegionServices().unblockUpdates();
}
// Used by tests
if (!allowCompaction.get()) {
return;
}
// Phase II: Compact the pipeline
try {
// Speculative compaction execution, may be interrupted if flush is forced while
// compaction is in progress
compactor.start();
} catch (IOException e) {
LOG.warn("Unable to run memstore compaction. region "
+ getRegionServices().getRegionInfo().getRegionNameAsString() + "store: "
+ getFamilyName(), e);
}
} finally {
inMemoryFlushInProgress.set(false);
}
}
private Segment getLastSegment() {
Segment localActive = getActive();
Segment tail = pipeline.getTail();
return tail == null ? localActive : tail;
}
private byte[] getFamilyNameInBytes() {
return store.getColumnFamilyDescriptor().getName();
}
private ThreadPoolExecutor getPool() {
return getRegionServices().getInMemoryCompactionPool();
}
@VisibleForTesting
protected boolean shouldFlushInMemory() {
if (this.active.keySize() > inmemoryFlushSize) { // size above flush threshold
if (inWalReplay) { // when replaying edits from WAL there is no need in in-memory flush
return false; // regardless the size
}
// the inMemoryFlushInProgress is CASed to be true here in order to mutual exclude
// the insert of the active into the compaction pipeline
return (inMemoryFlushInProgress.compareAndSet(false,true));
}
return false;
}
/**
* The request to cancel the compaction asynchronous task (caused by in-memory flush)
* The compaction may still happen if the request was sent too late
* Non-blocking request
*/
private void stopCompaction() {
if (inMemoryFlushInProgress.get()) {
compactor.stop();
}
}
protected void pushActiveToPipeline(MutableSegment active) {
if (!active.isEmpty()) {
pipeline.pushHead(active);
resetActive();
}
}
private void pushTailToSnapshot() {
VersionedSegmentsList segments = pipeline.getVersionedTail();
pushToSnapshot(segments.getStoreSegments());
// In Swap: don't close segments (they are in snapshot now) and don't update the region size
pipeline.swap(segments,null,false, false);
}
private void pushPipelineToSnapshot() {
int iterationsCnt = 0;
boolean done = false;
while (!done) {
iterationsCnt++;
VersionedSegmentsList segments = pipeline.getVersionedList();
pushToSnapshot(segments.getStoreSegments());
// swap can return false in case the pipeline was updated by ongoing compaction
// and the version increase, the chance of it happenning is very low
// In Swap: don't close segments (they are in snapshot now) and don't update the region size
done = pipeline.swap(segments, null, false, false);
if (iterationsCnt>2) {
// practically it is impossible that this loop iterates more than two times
// (because the compaction is stopped and none restarts it while in snapshot request),
// however stopping here for the case of the infinite loop causing by any error
LOG.warn("Multiple unsuccessful attempts to push the compaction pipeline to snapshot," +
" while flushing to disk.");
this.snapshot = SegmentFactory.instance().createImmutableSegment(getComparator());
break;
}
}
}
private void pushToSnapshot(List segments) {
if(segments.isEmpty()) return;
if(segments.size() == 1 && !segments.get(0).isEmpty()) {
this.snapshot = segments.get(0);
return;
} else { // create composite snapshot
this.snapshot =
SegmentFactory.instance().createCompositeImmutableSegment(getComparator(), segments);
}
}
private RegionServicesForStores getRegionServices() {
return regionServices;
}
/**
* The in-memory-flusher thread performs the flush asynchronously.
* There is at most one thread per memstore instance.
* It takes the updatesLock exclusively, pushes active into the pipeline, releases updatesLock
* and compacts the pipeline.
*/
private class InMemoryFlushRunnable implements Runnable {
@Override
public void run() {
try {
flushInMemory();
} catch (IOException e) {
LOG.warn("Unable to run memstore compaction. region "
+ getRegionServices().getRegionInfo().getRegionNameAsString()
+ "store: "+ getFamilyName(), e);
}
}
}
//----------------------------------------------------------------------
//methods for tests
//----------------------------------------------------------------------
@VisibleForTesting
boolean isMemStoreFlushingInMemory() {
return inMemoryFlushInProgress.get();
}
@VisibleForTesting
void disableCompaction() {
allowCompaction.set(false);
}
@VisibleForTesting
void enableCompaction() {
allowCompaction.set(true);
}
@VisibleForTesting
void initiateType(MemoryCompactionPolicy compactionType) {
compactor.initiateAction(compactionType);
}
/**
* @param cell Find the row that comes after this one. If null, we return the
* first.
* @return Next row or null if none found.
*/
Cell getNextRow(final Cell cell) {
Cell lowest = null;
List segments = getSegments();
for (Segment segment : segments) {
if (lowest == null) {
lowest = getNextRow(cell, segment.getCellSet());
} else {
lowest = getLowest(lowest, getNextRow(cell, segment.getCellSet()));
}
}
return lowest;
}
@VisibleForTesting
long getInmemoryFlushSize() {
return inmemoryFlushSize;
}
// debug method
public void debug() {
String msg = "active size=" + this.active.keySize();
msg += " threshold="+IN_MEMORY_FLUSH_THRESHOLD_FACTOR_DEFAULT* inmemoryFlushSize;
msg += " allow compaction is "+ (allowCompaction.get() ? "true" : "false");
msg += " inMemoryFlushInProgress is "+ (inMemoryFlushInProgress.get() ? "true" : "false");
LOG.debug(msg);
}
}