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Server functionality for HBase
/*
* Licensed to the Apache Software Foundation (ASF) under one
* or more contributor license agreements. See the NOTICE file
* distributed with this work for additional information
* regarding copyright ownership. The ASF licenses this file
* to you under the Apache License, Version 2.0 (the
* "License"); you may not use this file except in compliance
* with the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package org.apache.hadoop.hbase.util;
import static org.apache.hadoop.hbase.util.LocatedBlockHelper.getLocatedBlockLocations;
import static org.apache.hadoop.hdfs.protocol.HdfsConstants.SafeModeAction.SAFEMODE_GET;
import edu.umd.cs.findbugs.annotations.CheckForNull;
import java.io.ByteArrayInputStream;
import java.io.DataInputStream;
import java.io.EOFException;
import java.io.FileNotFoundException;
import java.io.IOException;
import java.io.InterruptedIOException;
import java.lang.reflect.InvocationTargetException;
import java.lang.reflect.Method;
import java.net.InetSocketAddress;
import java.net.URI;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.Collection;
import java.util.Collections;
import java.util.HashMap;
import java.util.HashSet;
import java.util.Iterator;
import java.util.List;
import java.util.Locale;
import java.util.Map;
import java.util.Set;
import java.util.Vector;
import java.util.concurrent.ConcurrentHashMap;
import java.util.concurrent.ExecutionException;
import java.util.concurrent.ExecutorService;
import java.util.concurrent.Executors;
import java.util.concurrent.Future;
import java.util.concurrent.FutureTask;
import java.util.concurrent.ThreadPoolExecutor;
import java.util.concurrent.TimeUnit;
import java.util.regex.Pattern;
import org.apache.commons.lang3.ArrayUtils;
import org.apache.hadoop.conf.Configuration;
import org.apache.hadoop.fs.BlockLocation;
import org.apache.hadoop.fs.FSDataInputStream;
import org.apache.hadoop.fs.FSDataOutputStream;
import org.apache.hadoop.fs.FileStatus;
import org.apache.hadoop.fs.FileSystem;
import org.apache.hadoop.fs.FileUtil;
import org.apache.hadoop.fs.Path;
import org.apache.hadoop.fs.PathFilter;
import org.apache.hadoop.fs.StorageType;
import org.apache.hadoop.fs.permission.FsPermission;
import org.apache.hadoop.hbase.ClusterId;
import org.apache.hadoop.hbase.HColumnDescriptor;
import org.apache.hadoop.hbase.HConstants;
import org.apache.hadoop.hbase.HDFSBlocksDistribution;
import org.apache.hadoop.hbase.TableName;
import org.apache.hadoop.hbase.client.ColumnFamilyDescriptorBuilder;
import org.apache.hadoop.hbase.client.RegionInfo;
import org.apache.hadoop.hbase.client.RegionInfoBuilder;
import org.apache.hadoop.hbase.exceptions.DeserializationException;
import org.apache.hadoop.hbase.fs.HFileSystem;
import org.apache.hadoop.hbase.io.HFileLink;
import org.apache.hadoop.hbase.master.HMaster;
import org.apache.hadoop.hbase.regionserver.StoreFileInfo;
import org.apache.hadoop.hdfs.DFSClient;
import org.apache.hadoop.hdfs.DFSHedgedReadMetrics;
import org.apache.hadoop.hdfs.DFSUtil;
import org.apache.hadoop.hdfs.DistributedFileSystem;
import org.apache.hadoop.hdfs.client.HdfsDataInputStream;
import org.apache.hadoop.hdfs.protocol.DatanodeInfo;
import org.apache.hadoop.hdfs.protocol.LocatedBlock;
import org.apache.hadoop.io.IOUtils;
import org.apache.hadoop.ipc.RemoteException;
import org.apache.hadoop.util.StringUtils;
import org.apache.yetus.audience.InterfaceAudience;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.apache.hbase.thirdparty.com.google.common.base.Throwables;
import org.apache.hbase.thirdparty.com.google.common.collect.Iterators;
import org.apache.hbase.thirdparty.com.google.common.collect.Sets;
import org.apache.hbase.thirdparty.com.google.common.primitives.Ints;
import org.apache.hbase.thirdparty.com.google.common.util.concurrent.ThreadFactoryBuilder;
import org.apache.hadoop.hbase.shaded.protobuf.ProtobufUtil;
import org.apache.hadoop.hbase.shaded.protobuf.generated.FSProtos;
/**
* Utility methods for interacting with the underlying file system.
*/
@InterfaceAudience.Private
public final class FSUtils {
private static final Logger LOG = LoggerFactory.getLogger(FSUtils.class);
private static final String THREAD_POOLSIZE = "hbase.client.localityCheck.threadPoolSize";
private static final int DEFAULT_THREAD_POOLSIZE = 2;
/** Set to true on Windows platforms */
// currently only used in testing. TODO refactor into a test class
public static final boolean WINDOWS = System.getProperty("os.name").startsWith("Windows");
private FSUtils() {
}
/** Returns True is fs is instance of DistributedFileSystem n */
public static boolean isDistributedFileSystem(final FileSystem fs) throws IOException {
FileSystem fileSystem = fs;
// If passed an instance of HFileSystem, it fails instanceof DistributedFileSystem.
// Check its backing fs for dfs-ness.
if (fs instanceof HFileSystem) {
fileSystem = ((HFileSystem) fs).getBackingFs();
}
return fileSystem instanceof DistributedFileSystem;
}
/**
* Compare path component of the Path URI; e.g. if hdfs://a/b/c and /a/b/c, it will compare the
* '/a/b/c' part. If you passed in 'hdfs://a/b/c and b/c, it would return true. Does not consider
* schema; i.e. if schemas different but path or subpath matches, the two will equate.
* @param pathToSearch Path we will be trying to match.
* @return True if pathTail is tail on the path of pathToSearch
*/
public static boolean isMatchingTail(final Path pathToSearch, final Path pathTail) {
Path tailPath = pathTail;
String tailName;
Path toSearch = pathToSearch;
String toSearchName;
boolean result = false;
if (pathToSearch.depth() != pathTail.depth()) {
return false;
}
do {
tailName = tailPath.getName();
if (tailName == null || tailName.isEmpty()) {
result = true;
break;
}
toSearchName = toSearch.getName();
if (toSearchName == null || toSearchName.isEmpty()) {
break;
}
// Move up a parent on each path for next go around. Path doesn't let us go off the end.
tailPath = tailPath.getParent();
toSearch = toSearch.getParent();
} while (tailName.equals(toSearchName));
return result;
}
/**
* Delete the region directory if exists.
* @return True if deleted the region directory.
*/
public static boolean deleteRegionDir(final Configuration conf, final RegionInfo hri)
throws IOException {
Path rootDir = CommonFSUtils.getRootDir(conf);
FileSystem fs = rootDir.getFileSystem(conf);
return CommonFSUtils.deleteDirectory(fs,
new Path(CommonFSUtils.getTableDir(rootDir, hri.getTable()), hri.getEncodedName()));
}
/**
* Create the specified file on the filesystem. By default, this will:
*
* - overwrite the file if it exists
* - apply the umask in the configuration (if it is enabled)
* - use the fs configured buffer size (or 4096 if not set)
* - use the configured column family replication or default replication if
* {@link ColumnFamilyDescriptorBuilder#DEFAULT_DFS_REPLICATION}
* - use the default block size
* - not track progress
*
* @param conf configurations
* @param fs {@link FileSystem} on which to write the file
* @param path {@link Path} to the file to write
* @param perm permissions
* @param favoredNodes favored data nodes
* @return output stream to the created file
* @throws IOException if the file cannot be created
*/
public static FSDataOutputStream create(Configuration conf, FileSystem fs, Path path,
FsPermission perm, InetSocketAddress[] favoredNodes) throws IOException {
if (fs instanceof HFileSystem) {
FileSystem backingFs = ((HFileSystem) fs).getBackingFs();
if (backingFs instanceof DistributedFileSystem) {
short replication = Short.parseShort(conf.get(ColumnFamilyDescriptorBuilder.DFS_REPLICATION,
String.valueOf(ColumnFamilyDescriptorBuilder.DEFAULT_DFS_REPLICATION)));
DistributedFileSystem.HdfsDataOutputStreamBuilder builder =
((DistributedFileSystem) backingFs).createFile(path).recursive().permission(perm)
.create();
if (favoredNodes != null) {
builder.favoredNodes(favoredNodes);
}
if (replication > 0) {
builder.replication(replication);
}
return builder.build();
}
}
return CommonFSUtils.create(fs, path, perm, true);
}
/**
* Checks to see if the specified file system is available
* @param fs filesystem
* @throws IOException e
*/
public static void checkFileSystemAvailable(final FileSystem fs) throws IOException {
if (!(fs instanceof DistributedFileSystem)) {
return;
}
IOException exception = null;
DistributedFileSystem dfs = (DistributedFileSystem) fs;
try {
if (dfs.exists(new Path("/"))) {
return;
}
} catch (IOException e) {
exception = e instanceof RemoteException ? ((RemoteException) e).unwrapRemoteException() : e;
}
try {
fs.close();
} catch (Exception e) {
LOG.error("file system close failed: ", e);
}
throw new IOException("File system is not available", exception);
}
/**
* Inquire the Active NameNode's safe mode status.
* @param dfs A DistributedFileSystem object representing the underlying HDFS.
* @return whether we're in safe mode
*/
private static boolean isInSafeMode(DistributedFileSystem dfs) throws IOException {
return dfs.setSafeMode(SAFEMODE_GET, true);
}
/**
* Check whether dfs is in safemode.
*/
public static void checkDfsSafeMode(final Configuration conf) throws IOException {
boolean isInSafeMode = false;
FileSystem fs = FileSystem.get(conf);
if (fs instanceof DistributedFileSystem) {
DistributedFileSystem dfs = (DistributedFileSystem) fs;
isInSafeMode = isInSafeMode(dfs);
}
if (isInSafeMode) {
throw new IOException("File system is in safemode, it can't be written now");
}
}
/**
* Verifies current version of file system
* @param fs filesystem object
* @param rootdir root hbase directory
* @return null if no version file exists, version string otherwise
* @throws IOException if the version file fails to open
* @throws DeserializationException if the version data cannot be translated into a version
*/
public static String getVersion(FileSystem fs, Path rootdir)
throws IOException, DeserializationException {
final Path versionFile = new Path(rootdir, HConstants.VERSION_FILE_NAME);
FileStatus[] status = null;
try {
// hadoop 2.0 throws FNFE if directory does not exist.
// hadoop 1.0 returns null if directory does not exist.
status = fs.listStatus(versionFile);
} catch (FileNotFoundException fnfe) {
return null;
}
if (ArrayUtils.getLength(status) == 0) {
return null;
}
String version = null;
byte[] content = new byte[(int) status[0].getLen()];
FSDataInputStream s = fs.open(versionFile);
try {
IOUtils.readFully(s, content, 0, content.length);
if (ProtobufUtil.isPBMagicPrefix(content)) {
version = parseVersionFrom(content);
} else {
// Presume it pre-pb format.
try (DataInputStream dis = new DataInputStream(new ByteArrayInputStream(content))) {
version = dis.readUTF();
}
}
} catch (EOFException eof) {
LOG.warn("Version file was empty, odd, will try to set it.");
} finally {
s.close();
}
return version;
}
/**
* Parse the content of the ${HBASE_ROOTDIR}/hbase.version file.
* @param bytes The byte content of the hbase.version file
* @return The version found in the file as a String
* @throws DeserializationException if the version data cannot be translated into a version
*/
static String parseVersionFrom(final byte[] bytes) throws DeserializationException {
ProtobufUtil.expectPBMagicPrefix(bytes);
int pblen = ProtobufUtil.lengthOfPBMagic();
FSProtos.HBaseVersionFileContent.Builder builder =
FSProtos.HBaseVersionFileContent.newBuilder();
try {
ProtobufUtil.mergeFrom(builder, bytes, pblen, bytes.length - pblen);
return builder.getVersion();
} catch (IOException e) {
// Convert
throw new DeserializationException(e);
}
}
/**
* Create the content to write into the ${HBASE_ROOTDIR}/hbase.version file.
* @param version Version to persist
* @return Serialized protobuf with version content and a bit of pb magic for a
* prefix.
*/
static byte[] toVersionByteArray(final String version) {
FSProtos.HBaseVersionFileContent.Builder builder =
FSProtos.HBaseVersionFileContent.newBuilder();
return ProtobufUtil.prependPBMagic(builder.setVersion(version).build().toByteArray());
}
/**
* Verifies current version of file system
* @param fs file system
* @param rootdir root directory of HBase installation
* @param message if true, issues a message on System.out
* @throws IOException if the version file cannot be opened
* @throws DeserializationException if the contents of the version file cannot be parsed
*/
public static void checkVersion(FileSystem fs, Path rootdir, boolean message)
throws IOException, DeserializationException {
checkVersion(fs, rootdir, message, 0, HConstants.DEFAULT_VERSION_FILE_WRITE_ATTEMPTS);
}
/**
* Verifies current version of file system
* @param fs file system
* @param rootdir root directory of HBase installation
* @param message if true, issues a message on System.out
* @param wait wait interval
* @param retries number of times to retry
* @throws IOException if the version file cannot be opened
* @throws DeserializationException if the contents of the version file cannot be parsed
*/
public static void checkVersion(FileSystem fs, Path rootdir, boolean message, int wait,
int retries) throws IOException, DeserializationException {
String version = getVersion(fs, rootdir);
String msg;
if (version == null) {
if (!metaRegionExists(fs, rootdir)) {
// rootDir is empty (no version file and no root region)
// just create new version file (HBASE-1195)
setVersion(fs, rootdir, wait, retries);
return;
} else {
msg = "hbase.version file is missing. Is your hbase.rootdir valid? "
+ "You can restore hbase.version file by running 'HBCK2 filesystem -fix'. "
+ "See https://github.com/apache/hbase-operator-tools/tree/master/hbase-hbck2";
}
} else if (version.compareTo(HConstants.FILE_SYSTEM_VERSION) == 0) {
return;
} else {
msg = "HBase file layout needs to be upgraded. Current filesystem version is " + version
+ " but software requires version " + HConstants.FILE_SYSTEM_VERSION
+ ". Consult http://hbase.apache.org/book.html for further information about "
+ "upgrading HBase.";
}
// version is deprecated require migration
// Output on stdout so user sees it in terminal.
if (message) {
System.out.println("WARNING! " + msg);
}
throw new FileSystemVersionException(msg);
}
/**
* Sets version of file system
* @param fs filesystem object
* @param rootdir hbase root
* @throws IOException e
*/
public static void setVersion(FileSystem fs, Path rootdir) throws IOException {
setVersion(fs, rootdir, HConstants.FILE_SYSTEM_VERSION, 0,
HConstants.DEFAULT_VERSION_FILE_WRITE_ATTEMPTS);
}
/**
* Sets version of file system
* @param fs filesystem object
* @param rootdir hbase root
* @param wait time to wait for retry
* @param retries number of times to retry before failing
* @throws IOException e
*/
public static void setVersion(FileSystem fs, Path rootdir, int wait, int retries)
throws IOException {
setVersion(fs, rootdir, HConstants.FILE_SYSTEM_VERSION, wait, retries);
}
/**
* Sets version of file system
* @param fs filesystem object
* @param rootdir hbase root directory
* @param version version to set
* @param wait time to wait for retry
* @param retries number of times to retry before throwing an IOException
* @throws IOException e
*/
public static void setVersion(FileSystem fs, Path rootdir, String version, int wait, int retries)
throws IOException {
Path versionFile = new Path(rootdir, HConstants.VERSION_FILE_NAME);
Path tempVersionFile = new Path(rootdir,
HConstants.HBASE_TEMP_DIRECTORY + Path.SEPARATOR + HConstants.VERSION_FILE_NAME);
while (true) {
try {
// Write the version to a temporary file
FSDataOutputStream s = fs.create(tempVersionFile);
try {
s.write(toVersionByteArray(version));
s.close();
s = null;
// Move the temp version file to its normal location. Returns false
// if the rename failed. Throw an IOE in that case.
if (!fs.rename(tempVersionFile, versionFile)) {
throw new IOException("Unable to move temp version file to " + versionFile);
}
} finally {
// Cleaning up the temporary if the rename failed would be trying
// too hard. We'll unconditionally create it again the next time
// through anyway, files are overwritten by default by create().
// Attempt to close the stream on the way out if it is still open.
try {
if (s != null) s.close();
} catch (IOException ignore) {
}
}
LOG.info("Created version file at " + rootdir.toString() + " with version=" + version);
return;
} catch (IOException e) {
if (retries > 0) {
LOG.debug("Unable to create version file at " + rootdir.toString() + ", retrying", e);
fs.delete(versionFile, false);
try {
if (wait > 0) {
Thread.sleep(wait);
}
} catch (InterruptedException ie) {
throw (InterruptedIOException) new InterruptedIOException().initCause(ie);
}
retries--;
} else {
throw e;
}
}
}
}
/**
* Checks that a cluster ID file exists in the HBase root directory
* @param fs the root directory FileSystem
* @param rootdir the HBase root directory in HDFS
* @param wait how long to wait between retries
* @return true if the file exists, otherwise false
* @throws IOException if checking the FileSystem fails
*/
public static boolean checkClusterIdExists(FileSystem fs, Path rootdir, long wait)
throws IOException {
while (true) {
try {
Path filePath = new Path(rootdir, HConstants.CLUSTER_ID_FILE_NAME);
return fs.exists(filePath);
} catch (IOException ioe) {
if (wait > 0L) {
LOG.warn("Unable to check cluster ID file in {}, retrying in {}ms", rootdir, wait, ioe);
try {
Thread.sleep(wait);
} catch (InterruptedException e) {
Thread.currentThread().interrupt();
throw (InterruptedIOException) new InterruptedIOException().initCause(e);
}
} else {
throw ioe;
}
}
}
}
/**
* Returns the value of the unique cluster ID stored for this HBase instance.
* @param fs the root directory FileSystem
* @param rootdir the path to the HBase root directory
* @return the unique cluster identifier
* @throws IOException if reading the cluster ID file fails
*/
public static ClusterId getClusterId(FileSystem fs, Path rootdir) throws IOException {
Path idPath = new Path(rootdir, HConstants.CLUSTER_ID_FILE_NAME);
ClusterId clusterId = null;
FileStatus status = fs.exists(idPath) ? fs.getFileStatus(idPath) : null;
if (status != null) {
int len = Ints.checkedCast(status.getLen());
byte[] content = new byte[len];
FSDataInputStream in = fs.open(idPath);
try {
in.readFully(content);
} catch (EOFException eof) {
LOG.warn("Cluster ID file {} is empty", idPath);
} finally {
in.close();
}
try {
clusterId = ClusterId.parseFrom(content);
} catch (DeserializationException e) {
throw new IOException("content=" + Bytes.toString(content), e);
}
// If not pb'd, make it so.
if (!ProtobufUtil.isPBMagicPrefix(content)) {
String cid = null;
in = fs.open(idPath);
try {
cid = in.readUTF();
clusterId = new ClusterId(cid);
} catch (EOFException eof) {
LOG.warn("Cluster ID file {} is empty", idPath);
} finally {
in.close();
}
rewriteAsPb(fs, rootdir, idPath, clusterId);
}
return clusterId;
} else {
LOG.warn("Cluster ID file does not exist at {}", idPath);
}
return clusterId;
}
/**
* */
private static void rewriteAsPb(final FileSystem fs, final Path rootdir, final Path p,
final ClusterId cid) throws IOException {
// Rewrite the file as pb. Move aside the old one first, write new
// then delete the moved-aside file.
Path movedAsideName = new Path(p + "." + EnvironmentEdgeManager.currentTime());
if (!fs.rename(p, movedAsideName)) throw new IOException("Failed rename of " + p);
setClusterId(fs, rootdir, cid, 100);
if (!fs.delete(movedAsideName, false)) {
throw new IOException("Failed delete of " + movedAsideName);
}
LOG.debug("Rewrote the hbase.id file as pb");
}
/**
* Writes a new unique identifier for this cluster to the "hbase.id" file in the HBase root
* directory
* @param fs the root directory FileSystem
* @param rootdir the path to the HBase root directory
* @param clusterId the unique identifier to store
* @param wait how long (in milliseconds) to wait between retries
* @throws IOException if writing to the FileSystem fails and no wait value
*/
public static void setClusterId(FileSystem fs, Path rootdir, ClusterId clusterId, int wait)
throws IOException {
while (true) {
try {
Path idFile = new Path(rootdir, HConstants.CLUSTER_ID_FILE_NAME);
Path tempIdFile = new Path(rootdir,
HConstants.HBASE_TEMP_DIRECTORY + Path.SEPARATOR + HConstants.CLUSTER_ID_FILE_NAME);
// Write the id file to a temporary location
FSDataOutputStream s = fs.create(tempIdFile);
try {
s.write(clusterId.toByteArray());
s.close();
s = null;
// Move the temporary file to its normal location. Throw an IOE if
// the rename failed
if (!fs.rename(tempIdFile, idFile)) {
throw new IOException("Unable to move temp version file to " + idFile);
}
} finally {
// Attempt to close the stream if still open on the way out
try {
if (s != null) s.close();
} catch (IOException ignore) {
}
}
if (LOG.isDebugEnabled()) {
LOG.debug("Created cluster ID file at " + idFile.toString() + " with ID: " + clusterId);
}
return;
} catch (IOException ioe) {
if (wait > 0) {
LOG.warn("Unable to create cluster ID file in " + rootdir.toString() + ", retrying in "
+ wait + "msec: " + StringUtils.stringifyException(ioe));
try {
Thread.sleep(wait);
} catch (InterruptedException e) {
throw (InterruptedIOException) new InterruptedIOException().initCause(e);
}
} else {
throw ioe;
}
}
}
}
/**
* If DFS, check safe mode and if so, wait until we clear it.
* @param conf configuration
* @param wait Sleep between retries
* @throws IOException e
*/
public static void waitOnSafeMode(final Configuration conf, final long wait) throws IOException {
FileSystem fs = FileSystem.get(conf);
if (!(fs instanceof DistributedFileSystem)) return;
DistributedFileSystem dfs = (DistributedFileSystem) fs;
// Make sure dfs is not in safe mode
while (isInSafeMode(dfs)) {
LOG.info("Waiting for dfs to exit safe mode...");
try {
Thread.sleep(wait);
} catch (InterruptedException e) {
Thread.currentThread().interrupt();
throw (InterruptedIOException) new InterruptedIOException().initCause(e);
}
}
}
/**
* Checks if meta region exists
* @param fs file system
* @param rootDir root directory of HBase installation
* @return true if exists
*/
public static boolean metaRegionExists(FileSystem fs, Path rootDir) throws IOException {
Path metaRegionDir = getRegionDirFromRootDir(rootDir, RegionInfoBuilder.FIRST_META_REGIONINFO);
return fs.exists(metaRegionDir);
}
/**
* Compute HDFS block distribution of a given HdfsDataInputStream. All HdfsDataInputStreams are
* backed by a series of LocatedBlocks, which are fetched periodically from the namenode. This
* method retrieves those blocks from the input stream and uses them to calculate
* HDFSBlockDistribution. The underlying method in DFSInputStream does attempt to use locally
* cached blocks, but may hit the namenode if the cache is determined to be incomplete. The method
* also involves making copies of all LocatedBlocks rather than return the underlying blocks
* themselves.
*/
public static HDFSBlocksDistribution
computeHDFSBlocksDistribution(HdfsDataInputStream inputStream) throws IOException {
List blocks = inputStream.getAllBlocks();
HDFSBlocksDistribution blocksDistribution = new HDFSBlocksDistribution();
for (LocatedBlock block : blocks) {
String[] hosts = getHostsForLocations(block);
long len = block.getBlockSize();
StorageType[] storageTypes = block.getStorageTypes();
blocksDistribution.addHostsAndBlockWeight(hosts, len, storageTypes);
}
return blocksDistribution;
}
private static String[] getHostsForLocations(LocatedBlock block) {
DatanodeInfo[] locations = getLocatedBlockLocations(block);
String[] hosts = new String[locations.length];
for (int i = 0; i < hosts.length; i++) {
hosts[i] = locations[i].getHostName();
}
return hosts;
}
/**
* Compute HDFS blocks distribution of a given file, or a portion of the file
* @param fs file system
* @param status file status of the file
* @param start start position of the portion
* @param length length of the portion
* @return The HDFS blocks distribution
*/
static public HDFSBlocksDistribution computeHDFSBlocksDistribution(final FileSystem fs,
FileStatus status, long start, long length) throws IOException {
HDFSBlocksDistribution blocksDistribution = new HDFSBlocksDistribution();
BlockLocation[] blockLocations = fs.getFileBlockLocations(status, start, length);
addToHDFSBlocksDistribution(blocksDistribution, blockLocations);
return blocksDistribution;
}
/**
* Update blocksDistribution with blockLocations
* @param blocksDistribution the hdfs blocks distribution
* @param blockLocations an array containing block location
*/
static public void addToHDFSBlocksDistribution(HDFSBlocksDistribution blocksDistribution,
BlockLocation[] blockLocations) throws IOException {
for (BlockLocation bl : blockLocations) {
String[] hosts = bl.getHosts();
long len = bl.getLength();
StorageType[] storageTypes = bl.getStorageTypes();
blocksDistribution.addHostsAndBlockWeight(hosts, len, storageTypes);
}
}
// TODO move this method OUT of FSUtils. No dependencies to HMaster
/**
* Returns the total overall fragmentation percentage. Includes hbase:meta and -ROOT- as well.
* @param master The master defining the HBase root and file system
* @return A map for each table and its percentage (never null)
* @throws IOException When scanning the directory fails
*/
public static int getTotalTableFragmentation(final HMaster master) throws IOException {
Map map = getTableFragmentation(master);
return map.isEmpty() ? -1 : map.get("-TOTAL-");
}
/**
* Runs through the HBase rootdir and checks how many stores for each table have more than one
* file in them. Checks -ROOT- and hbase:meta too. The total percentage across all tables is
* stored under the special key "-TOTAL-".
* @param master The master defining the HBase root and file system.
* @return A map for each table and its percentage (never null).
* @throws IOException When scanning the directory fails.
*/
public static Map getTableFragmentation(final HMaster master)
throws IOException {
Path path = CommonFSUtils.getRootDir(master.getConfiguration());
// since HMaster.getFileSystem() is package private
FileSystem fs = path.getFileSystem(master.getConfiguration());
return getTableFragmentation(fs, path);
}
/**
* Runs through the HBase rootdir and checks how many stores for each table have more than one
* file in them. Checks -ROOT- and hbase:meta too. The total percentage across all tables is
* stored under the special key "-TOTAL-".
* @param fs The file system to use
* @param hbaseRootDir The root directory to scan
* @return A map for each table and its percentage (never null)
* @throws IOException When scanning the directory fails
*/
public static Map getTableFragmentation(final FileSystem fs,
final Path hbaseRootDir) throws IOException {
Map frags = new HashMap<>();
int cfCountTotal = 0;
int cfFragTotal = 0;
PathFilter regionFilter = new RegionDirFilter(fs);
PathFilter familyFilter = new FamilyDirFilter(fs);
List tableDirs = getTableDirs(fs, hbaseRootDir);
for (Path d : tableDirs) {
int cfCount = 0;
int cfFrag = 0;
FileStatus[] regionDirs = fs.listStatus(d, regionFilter);
for (FileStatus regionDir : regionDirs) {
Path dd = regionDir.getPath();
// else its a region name, now look in region for families
FileStatus[] familyDirs = fs.listStatus(dd, familyFilter);
for (FileStatus familyDir : familyDirs) {
cfCount++;
cfCountTotal++;
Path family = familyDir.getPath();
// now in family make sure only one file
FileStatus[] familyStatus = fs.listStatus(family);
if (familyStatus.length > 1) {
cfFrag++;
cfFragTotal++;
}
}
}
// compute percentage per table and store in result list
frags.put(CommonFSUtils.getTableName(d).getNameAsString(),
cfCount == 0 ? 0 : Math.round((float) cfFrag / cfCount * 100));
}
// set overall percentage for all tables
frags.put("-TOTAL-",
cfCountTotal == 0 ? 0 : Math.round((float) cfFragTotal / cfCountTotal * 100));
return frags;
}
/**
* A {@link PathFilter} that returns only regular files.
*/
static class FileFilter extends AbstractFileStatusFilter {
private final FileSystem fs;
public FileFilter(final FileSystem fs) {
this.fs = fs;
}
@Override
protected boolean accept(Path p, @CheckForNull Boolean isDir) {
try {
return isFile(fs, isDir, p);
} catch (IOException e) {
LOG.warn("Unable to verify if path={} is a regular file", p, e);
return false;
}
}
}
/**
* Directory filter that doesn't include any of the directories in the specified blacklist
*/
public static class BlackListDirFilter extends AbstractFileStatusFilter {
private final FileSystem fs;
private List blacklist;
/**
* Create a filter on the givem filesystem with the specified blacklist
* @param fs filesystem to filter
* @param directoryNameBlackList list of the names of the directories to filter. If
* null, all directories are returned
*/
@SuppressWarnings("unchecked")
public BlackListDirFilter(final FileSystem fs, final List directoryNameBlackList) {
this.fs = fs;
blacklist = (List) (directoryNameBlackList == null
? Collections.emptyList()
: directoryNameBlackList);
}
@Override
protected boolean accept(Path p, @CheckForNull Boolean isDir) {
if (!isValidName(p.getName())) {
return false;
}
try {
return isDirectory(fs, isDir, p);
} catch (IOException e) {
LOG.warn("An error occurred while verifying if [{}] is a valid directory."
+ " Returning 'not valid' and continuing.", p, e);
return false;
}
}
protected boolean isValidName(final String name) {
return !blacklist.contains(name);
}
}
/**
* A {@link PathFilter} that only allows directories.
*/
public static class DirFilter extends BlackListDirFilter {
public DirFilter(FileSystem fs) {
super(fs, null);
}
}
/**
* A {@link PathFilter} that returns usertable directories. To get all directories use the
* {@link BlackListDirFilter} with a null blacklist
*/
public static class UserTableDirFilter extends BlackListDirFilter {
public UserTableDirFilter(FileSystem fs) {
super(fs, HConstants.HBASE_NON_TABLE_DIRS);
}
@Override
protected boolean isValidName(final String name) {
if (!super.isValidName(name)) return false;
try {
TableName.isLegalTableQualifierName(Bytes.toBytes(name));
} catch (IllegalArgumentException e) {
LOG.info("Invalid table name: {}", name);
return false;
}
return true;
}
}
public static List getTableDirs(final FileSystem fs, final Path rootdir)
throws IOException {
List tableDirs = new ArrayList<>();
Path baseNamespaceDir = new Path(rootdir, HConstants.BASE_NAMESPACE_DIR);
if (fs.exists(baseNamespaceDir)) {
for (FileStatus status : fs.globStatus(new Path(baseNamespaceDir, "*"))) {
tableDirs.addAll(FSUtils.getLocalTableDirs(fs, status.getPath()));
}
}
return tableDirs;
}
/**
* @return All the table directories under rootdir. Ignore non table hbase folders
* such as .logs, .oldlogs, .corrupt folders.
*/
public static List getLocalTableDirs(final FileSystem fs, final Path rootdir)
throws IOException {
// presumes any directory under hbase.rootdir is a table
FileStatus[] dirs = fs.listStatus(rootdir, new UserTableDirFilter(fs));
List tabledirs = new ArrayList<>(dirs.length);
for (FileStatus dir : dirs) {
tabledirs.add(dir.getPath());
}
return tabledirs;
}
/**
* Filter for all dirs that don't start with '.'
*/
public static class RegionDirFilter extends AbstractFileStatusFilter {
// This pattern will accept 0.90+ style hex region dirs and older numeric region dir names.
final public static Pattern regionDirPattern = Pattern.compile("^[0-9a-f]*$");
final FileSystem fs;
public RegionDirFilter(FileSystem fs) {
this.fs = fs;
}
@Override
protected boolean accept(Path p, @CheckForNull Boolean isDir) {
if (!regionDirPattern.matcher(p.getName()).matches()) {
return false;
}
try {
return isDirectory(fs, isDir, p);
} catch (IOException ioe) {
// Maybe the file was moved or the fs was disconnected.
LOG.warn("Skipping file {} due to IOException", p, ioe);
return false;
}
}
}
/**
* Given a particular table dir, return all the regiondirs inside it, excluding files such as
* .tableinfo
* @param fs A file system for the Path
* @param tableDir Path to a specific table directory <hbase.rootdir>/<tabledir>
* @return List of paths to valid region directories in table dir.
*/
public static List getRegionDirs(final FileSystem fs, final Path tableDir)
throws IOException {
// assumes we are in a table dir.
List rds = listStatusWithStatusFilter(fs, tableDir, new RegionDirFilter(fs));
if (rds == null) {
return Collections.emptyList();
}
List regionDirs = new ArrayList<>(rds.size());
for (FileStatus rdfs : rds) {
Path rdPath = rdfs.getPath();
regionDirs.add(rdPath);
}
return regionDirs;
}
public static Path getRegionDirFromRootDir(Path rootDir, RegionInfo region) {
return getRegionDirFromTableDir(CommonFSUtils.getTableDir(rootDir, region.getTable()), region);
}
public static Path getRegionDirFromTableDir(Path tableDir, RegionInfo region) {
return getRegionDirFromTableDir(tableDir,
ServerRegionReplicaUtil.getRegionInfoForFs(region).getEncodedName());
}
public static Path getRegionDirFromTableDir(Path tableDir, String encodedRegionName) {
return new Path(tableDir, encodedRegionName);
}
/**
* Filter for all dirs that are legal column family names. This is generally used for colfam dirs
* <hbase.rootdir>/<tabledir>/<regiondir>/<colfamdir>.
*/
public static class FamilyDirFilter extends AbstractFileStatusFilter {
final FileSystem fs;
public FamilyDirFilter(FileSystem fs) {
this.fs = fs;
}
@Override
protected boolean accept(Path p, @CheckForNull Boolean isDir) {
try {
// throws IAE if invalid
HColumnDescriptor.isLegalFamilyName(Bytes.toBytes(p.getName()));
} catch (IllegalArgumentException iae) {
// path name is an invalid family name and thus is excluded.
return false;
}
try {
return isDirectory(fs, isDir, p);
} catch (IOException ioe) {
// Maybe the file was moved or the fs was disconnected.
LOG.warn("Skipping file {} due to IOException", p, ioe);
return false;
}
}
}
/**
* Given a particular region dir, return all the familydirs inside it
* @param fs A file system for the Path
* @param regionDir Path to a specific region directory
* @return List of paths to valid family directories in region dir.
*/
public static List getFamilyDirs(final FileSystem fs, final Path regionDir)
throws IOException {
// assumes we are in a region dir.
return getFilePaths(fs, regionDir, new FamilyDirFilter(fs));
}
public static List getReferenceFilePaths(final FileSystem fs, final Path familyDir)
throws IOException {
return getFilePaths(fs, familyDir, new ReferenceFileFilter(fs));
}
public static List getReferenceAndLinkFilePaths(final FileSystem fs, final Path familyDir)
throws IOException {
return getFilePaths(fs, familyDir, new ReferenceAndLinkFileFilter(fs));
}
private static List getFilePaths(final FileSystem fs, final Path dir,
final PathFilter pathFilter) throws IOException {
FileStatus[] fds = fs.listStatus(dir, pathFilter);
List files = new ArrayList<>(fds.length);
for (FileStatus fdfs : fds) {
Path fdPath = fdfs.getPath();
files.add(fdPath);
}
return files;
}
public static int getRegionReferenceAndLinkFileCount(final FileSystem fs, final Path p) {
int result = 0;
try {
for (Path familyDir : getFamilyDirs(fs, p)) {
result += getReferenceAndLinkFilePaths(fs, familyDir).size();
}
} catch (IOException e) {
LOG.warn("Error Counting reference files.", e);
}
return result;
}
public static class ReferenceAndLinkFileFilter implements PathFilter {
private final FileSystem fs;
public ReferenceAndLinkFileFilter(FileSystem fs) {
this.fs = fs;
}
@Override
public boolean accept(Path rd) {
try {
// only files can be references.
return !fs.getFileStatus(rd).isDirectory()
&& (StoreFileInfo.isReference(rd) || HFileLink.isHFileLink(rd));
} catch (IOException ioe) {
// Maybe the file was moved or the fs was disconnected.
LOG.warn("Skipping file " + rd + " due to IOException", ioe);
return false;
}
}
}
/**
* Filter for HFiles that excludes reference files.
*/
public static class HFileFilter extends AbstractFileStatusFilter {
final FileSystem fs;
public HFileFilter(FileSystem fs) {
this.fs = fs;
}
@Override
protected boolean accept(Path p, @CheckForNull Boolean isDir) {
if (!StoreFileInfo.isHFile(p) && !StoreFileInfo.isMobFile(p)) {
return false;
}
try {
return isFile(fs, isDir, p);
} catch (IOException ioe) {
// Maybe the file was moved or the fs was disconnected.
LOG.warn("Skipping file {} due to IOException", p, ioe);
return false;
}
}
}
/**
* Filter for HFileLinks (StoreFiles and HFiles not included). the filter itself does not consider
* if a link is file or not.
*/
public static class HFileLinkFilter implements PathFilter {
@Override
public boolean accept(Path p) {
return HFileLink.isHFileLink(p);
}
}
public static class ReferenceFileFilter extends AbstractFileStatusFilter {
private final FileSystem fs;
public ReferenceFileFilter(FileSystem fs) {
this.fs = fs;
}
@Override
protected boolean accept(Path p, @CheckForNull Boolean isDir) {
if (!StoreFileInfo.isReference(p)) {
return false;
}
try {
// only files can be references.
return isFile(fs, isDir, p);
} catch (IOException ioe) {
// Maybe the file was moved or the fs was disconnected.
LOG.warn("Skipping file {} due to IOException", p, ioe);
return false;
}
}
}
/**
* Called every so-often by storefile map builder getTableStoreFilePathMap to report progress.
*/
interface ProgressReporter {
/**
* @param status File or directory we are about to process.
*/
void progress(FileStatus status);
}
/**
* Runs through the HBase rootdir/tablename and creates a reverse lookup map for table StoreFile
* names to the full Path.
* Example...
* Key = 3944417774205889744
* Value = hdfs://localhost:51169/user/userid/-ROOT-/70236052/info/3944417774205889744
* @param map map to add values. If null, this method will create and populate one to
* return
* @param fs The file system to use.
* @param hbaseRootDir The root directory to scan.
* @param tableName name of the table to scan.
* @return Map keyed by StoreFile name with a value of the full Path.
* @throws IOException When scanning the directory fails.
*/
public static Map getTableStoreFilePathMap(Map map,
final FileSystem fs, final Path hbaseRootDir, TableName tableName)
throws IOException, InterruptedException {
return getTableStoreFilePathMap(map, fs, hbaseRootDir, tableName, null, null,
(ProgressReporter) null);
}
/**
* Runs through the HBase rootdir/tablename and creates a reverse lookup map for table StoreFile
* names to the full Path. Note that because this method can be called on a 'live' HBase system
* that we will skip files that no longer exist by the time we traverse them and similarly the
* user of the result needs to consider that some entries in this map may not exist by the time
* this call completes.
* Example...
* Key = 3944417774205889744
* Value = hdfs://localhost:51169/user/userid/-ROOT-/70236052/info/3944417774205889744
* @param resultMap map to add values. If null, this method will create and populate one to
* return
* @param fs The file system to use.
* @param hbaseRootDir The root directory to scan.
* @param tableName name of the table to scan.
* @param sfFilter optional path filter to apply to store files
* @param executor optional executor service to parallelize this operation
* @param progressReporter Instance or null; gets called every time we move to new region of
* family dir and for each store file.
* @return Map keyed by StoreFile name with a value of the full Path.
* @throws IOException When scanning the directory fails.
* @deprecated Since 2.3.0. For removal in hbase4. Use ProgressReporter override instead.
*/
@Deprecated
public static Map getTableStoreFilePathMap(Map resultMap,
final FileSystem fs, final Path hbaseRootDir, TableName tableName, final PathFilter sfFilter,
ExecutorService executor, final HbckErrorReporter progressReporter)
throws IOException, InterruptedException {
return getTableStoreFilePathMap(resultMap, fs, hbaseRootDir, tableName, sfFilter, executor,
new ProgressReporter() {
@Override
public void progress(FileStatus status) {
// status is not used in this implementation.
progressReporter.progress();
}
});
}
/**
* Runs through the HBase rootdir/tablename and creates a reverse lookup map for table StoreFile
* names to the full Path. Note that because this method can be called on a 'live' HBase system
* that we will skip files that no longer exist by the time we traverse them and similarly the
* user of the result needs to consider that some entries in this map may not exist by the time
* this call completes.
* Example...
* Key = 3944417774205889744
* Value = hdfs://localhost:51169/user/userid/-ROOT-/70236052/info/3944417774205889744
* @param resultMap map to add values. If null, this method will create and populate one to
* return
* @param fs The file system to use.
* @param hbaseRootDir The root directory to scan.
* @param tableName name of the table to scan.
* @param sfFilter optional path filter to apply to store files
* @param executor optional executor service to parallelize this operation
* @param progressReporter Instance or null; gets called every time we move to new region of
* family dir and for each store file.
* @return Map keyed by StoreFile name with a value of the full Path.
* @throws IOException When scanning the directory fails.
* @throws InterruptedException the thread is interrupted, either before or during the activity.
*/
public static Map getTableStoreFilePathMap(Map resultMap,
final FileSystem fs, final Path hbaseRootDir, TableName tableName, final PathFilter sfFilter,
ExecutorService executor, final ProgressReporter progressReporter)
throws IOException, InterruptedException {
final Map finalResultMap =
resultMap == null ? new ConcurrentHashMap<>(128, 0.75f, 32) : resultMap;
// only include the directory paths to tables
Path tableDir = CommonFSUtils.getTableDir(hbaseRootDir, tableName);
// Inside a table, there are compaction.dir directories to skip. Otherwise, all else
// should be regions.
final FamilyDirFilter familyFilter = new FamilyDirFilter(fs);
final Vector exceptions = new Vector<>();
try {
List regionDirs =
FSUtils.listStatusWithStatusFilter(fs, tableDir, new RegionDirFilter(fs));
if (regionDirs == null) {
return finalResultMap;
}
final List> futures = new ArrayList<>(regionDirs.size());
for (FileStatus regionDir : regionDirs) {
if (null != progressReporter) {
progressReporter.progress(regionDir);
}
final Path dd = regionDir.getPath();
if (!exceptions.isEmpty()) {
break;
}
Runnable getRegionStoreFileMapCall = new Runnable() {
@Override
public void run() {
try {
HashMap regionStoreFileMap = new HashMap<>();
List familyDirs =
FSUtils.listStatusWithStatusFilter(fs, dd, familyFilter);
if (familyDirs == null) {
if (!fs.exists(dd)) {
LOG.warn("Skipping region because it no longer exists: " + dd);
} else {
LOG.warn("Skipping region because it has no family dirs: " + dd);
}
return;
}
for (FileStatus familyDir : familyDirs) {
if (null != progressReporter) {
progressReporter.progress(familyDir);
}
Path family = familyDir.getPath();
if (family.getName().equals(HConstants.RECOVERED_EDITS_DIR)) {
continue;
}
// now in family, iterate over the StoreFiles and
// put in map
FileStatus[] familyStatus = fs.listStatus(family);
for (FileStatus sfStatus : familyStatus) {
if (null != progressReporter) {
progressReporter.progress(sfStatus);
}
Path sf = sfStatus.getPath();
if (sfFilter == null || sfFilter.accept(sf)) {
regionStoreFileMap.put(sf.getName(), sf);
}
}
}
finalResultMap.putAll(regionStoreFileMap);
} catch (Exception e) {
LOG.error("Could not get region store file map for region: " + dd, e);
exceptions.add(e);
}
}
};
// If executor is available, submit async tasks to exec concurrently, otherwise
// just do serial sync execution
if (executor != null) {
Future future = executor.submit(getRegionStoreFileMapCall);
futures.add(future);
} else {
FutureTask future = new FutureTask<>(getRegionStoreFileMapCall, null);
future.run();
futures.add(future);
}
}
// Ensure all pending tasks are complete (or that we run into an exception)
for (Future f : futures) {
if (!exceptions.isEmpty()) {
break;
}
try {
f.get();
} catch (ExecutionException e) {
LOG.error("Unexpected exec exception! Should've been caught already. (Bug?)", e);
// Shouldn't happen, we already logged/caught any exceptions in the Runnable
}
}
} catch (IOException e) {
LOG.error("Cannot execute getTableStoreFilePathMap for " + tableName, e);
exceptions.add(e);
} finally {
if (!exceptions.isEmpty()) {
// Just throw the first exception as an indication something bad happened
// Don't need to propagate all the exceptions, we already logged them all anyway
Throwables.propagateIfPossible(exceptions.firstElement(), IOException.class);
throw new IOException(exceptions.firstElement());
}
}
return finalResultMap;
}
public static int getRegionReferenceFileCount(final FileSystem fs, final Path p) {
int result = 0;
try {
for (Path familyDir : getFamilyDirs(fs, p)) {
result += getReferenceFilePaths(fs, familyDir).size();
}
} catch (IOException e) {
LOG.warn("Error counting reference files", e);
}
return result;
}
/**
* Runs through the HBase rootdir and creates a reverse lookup map for table StoreFile names to
* the full Path.
* Example...
* Key = 3944417774205889744
* Value = hdfs://localhost:51169/user/userid/-ROOT-/70236052/info/3944417774205889744
* @param fs The file system to use.
* @param hbaseRootDir The root directory to scan.
* @return Map keyed by StoreFile name with a value of the full Path.
* @throws IOException When scanning the directory fails.
*/
public static Map getTableStoreFilePathMap(final FileSystem fs,
final Path hbaseRootDir) throws IOException, InterruptedException {
return getTableStoreFilePathMap(fs, hbaseRootDir, null, null, (ProgressReporter) null);
}
/**
* Runs through the HBase rootdir and creates a reverse lookup map for table StoreFile names to
* the full Path.
* Example...
* Key = 3944417774205889744
* Value = hdfs://localhost:51169/user/userid/-ROOT-/70236052/info/3944417774205889744
* @param fs The file system to use.
* @param hbaseRootDir The root directory to scan.
* @param sfFilter optional path filter to apply to store files
* @param executor optional executor service to parallelize this operation
* @param progressReporter Instance or null; gets called every time we move to new region of
* family dir and for each store file.
* @return Map keyed by StoreFile name with a value of the full Path.
* @throws IOException When scanning the directory fails.
* @deprecated Since 2.3.0. Will be removed in hbase4. Used
* {@link #getTableStoreFilePathMap(FileSystem, Path, PathFilter, ExecutorService, ProgressReporter)}
*/
@Deprecated
public static Map getTableStoreFilePathMap(final FileSystem fs,
final Path hbaseRootDir, PathFilter sfFilter, ExecutorService executor,
HbckErrorReporter progressReporter) throws IOException, InterruptedException {
return getTableStoreFilePathMap(fs, hbaseRootDir, sfFilter, executor, new ProgressReporter() {
@Override
public void progress(FileStatus status) {
// status is not used in this implementation.
progressReporter.progress();
}
});
}
/**
* Runs through the HBase rootdir and creates a reverse lookup map for table StoreFile names to
* the full Path.
* Example...
* Key = 3944417774205889744
* Value = hdfs://localhost:51169/user/userid/-ROOT-/70236052/info/3944417774205889744
* @param fs The file system to use.
* @param hbaseRootDir The root directory to scan.
* @param sfFilter optional path filter to apply to store files
* @param executor optional executor service to parallelize this operation
* @param progressReporter Instance or null; gets called every time we move to new region of
* family dir and for each store file.
* @return Map keyed by StoreFile name with a value of the full Path.
* @throws IOException When scanning the directory fails.
*/
public static Map getTableStoreFilePathMap(final FileSystem fs,
final Path hbaseRootDir, PathFilter sfFilter, ExecutorService executor,
ProgressReporter progressReporter) throws IOException, InterruptedException {
ConcurrentHashMap map = new ConcurrentHashMap<>(1024, 0.75f, 32);
// if this method looks similar to 'getTableFragmentation' that is because
// it was borrowed from it.
// only include the directory paths to tables
for (Path tableDir : FSUtils.getTableDirs(fs, hbaseRootDir)) {
getTableStoreFilePathMap(map, fs, hbaseRootDir, CommonFSUtils.getTableName(tableDir),
sfFilter, executor, progressReporter);
}
return map;
}
/**
* Filters FileStatuses in an array and returns a list
* @param input An array of FileStatuses
* @param filter A required filter to filter the array
* @return A list of FileStatuses
*/
public static List filterFileStatuses(FileStatus[] input, FileStatusFilter filter) {
if (input == null) return null;
return filterFileStatuses(Iterators.forArray(input), filter);
}
/**
* Filters FileStatuses in an iterator and returns a list
* @param input An iterator of FileStatuses
* @param filter A required filter to filter the array
* @return A list of FileStatuses
*/
public static List filterFileStatuses(Iterator input,
FileStatusFilter filter) {
if (input == null) return null;
ArrayList results = new ArrayList<>();
while (input.hasNext()) {
FileStatus f = input.next();
if (filter.accept(f)) {
results.add(f);
}
}
return results;
}
/**
* Calls fs.listStatus() and treats FileNotFoundException as non-fatal This accommodates
* differences between hadoop versions, where hadoop 1 does not throw a FileNotFoundException, and
* return an empty FileStatus[] while Hadoop 2 will throw FileNotFoundException.
* @param fs file system
* @param dir directory
* @param filter file status filter
* @return null if dir is empty or doesn't exist, otherwise FileStatus list
*/
public static List listStatusWithStatusFilter(final FileSystem fs, final Path dir,
final FileStatusFilter filter) throws IOException {
FileStatus[] status = null;
try {
status = fs.listStatus(dir);
} catch (FileNotFoundException fnfe) {
LOG.trace("{} does not exist", dir);
return null;
}
if (ArrayUtils.getLength(status) == 0) {
return null;
}
if (filter == null) {
return Arrays.asList(status);
} else {
List status2 = filterFileStatuses(status, filter);
if (status2 == null || status2.isEmpty()) {
return null;
} else {
return status2;
}
}
}
/**
* This function is to scan the root path of the file system to get the degree of locality for
* each region on each of the servers having at least one block of that region. This is used by
* the tool {@link org.apache.hadoop.hbase.master.RegionPlacementMaintainer} the configuration to
* use
* @return the mapping from region encoded name to a map of server names to locality fraction in
* case of file system errors or interrupts
*/
public static Map>
getRegionDegreeLocalityMappingFromFS(final Configuration conf) throws IOException {
return getRegionDegreeLocalityMappingFromFS(conf, null,
conf.getInt(THREAD_POOLSIZE, DEFAULT_THREAD_POOLSIZE));
}
/**
* This function is to scan the root path of the file system to get the degree of locality for
* each region on each of the servers having at least one block of that region. the configuration
* to use the table you wish to scan locality for the thread pool size to use
* @return the mapping from region encoded name to a map of server names to locality fraction in
* case of file system errors or interrupts
*/
public static Map> getRegionDegreeLocalityMappingFromFS(
final Configuration conf, final String desiredTable, int threadPoolSize) throws IOException {
Map> regionDegreeLocalityMapping = new ConcurrentHashMap<>();
getRegionLocalityMappingFromFS(conf, desiredTable, threadPoolSize, regionDegreeLocalityMapping);
return regionDegreeLocalityMapping;
}
/**
* This function is to scan the root path of the file system to get either the mapping between the
* region name and its best locality region server or the degree of locality of each region on
* each of the servers having at least one block of that region. The output map parameters are
* both optional. the configuration to use the table you wish to scan locality for the thread pool
* size to use the map into which to put the locality degree mapping or null, must be a
* thread-safe implementation in case of file system errors or interrupts
*/
private static void getRegionLocalityMappingFromFS(final Configuration conf,
final String desiredTable, int threadPoolSize,
final Map> regionDegreeLocalityMapping) throws IOException {
final FileSystem fs = FileSystem.get(conf);
final Path rootPath = CommonFSUtils.getRootDir(conf);
final long startTime = EnvironmentEdgeManager.currentTime();
final Path queryPath;
// The table files are in ${hbase.rootdir}/data///*
if (null == desiredTable) {
queryPath =
new Path(new Path(rootPath, HConstants.BASE_NAMESPACE_DIR).toString() + "/*/*/*/");
} else {
queryPath = new Path(
CommonFSUtils.getTableDir(rootPath, TableName.valueOf(desiredTable)).toString() + "/*/");
}
// reject all paths that are not appropriate
PathFilter pathFilter = new PathFilter() {
@Override
public boolean accept(Path path) {
// this is the region name; it may get some noise data
if (null == path) {
return false;
}
// no parent?
Path parent = path.getParent();
if (null == parent) {
return false;
}
String regionName = path.getName();
if (null == regionName) {
return false;
}
if (!regionName.toLowerCase(Locale.ROOT).matches("[0-9a-f]+")) {
return false;
}
return true;
}
};
FileStatus[] statusList = fs.globStatus(queryPath, pathFilter);
if (LOG.isDebugEnabled()) {
LOG.debug("Query Path: {} ; # list of files: {}", queryPath, Arrays.toString(statusList));
}
if (null == statusList) {
return;
}
// lower the number of threads in case we have very few expected regions
threadPoolSize = Math.min(threadPoolSize, statusList.length);
// run in multiple threads
final ExecutorService tpe = Executors.newFixedThreadPool(threadPoolSize,
new ThreadFactoryBuilder().setNameFormat("FSRegionQuery-pool-%d").setDaemon(true)
.setUncaughtExceptionHandler(Threads.LOGGING_EXCEPTION_HANDLER).build());
try {
// ignore all file status items that are not of interest
for (FileStatus regionStatus : statusList) {
if (null == regionStatus || !regionStatus.isDirectory()) {
continue;
}
final Path regionPath = regionStatus.getPath();
if (null != regionPath) {
tpe.execute(new FSRegionScanner(fs, regionPath, null, regionDegreeLocalityMapping));
}
}
} finally {
tpe.shutdown();
final long threadWakeFrequency = (long) conf.getInt(HConstants.THREAD_WAKE_FREQUENCY,
HConstants.DEFAULT_THREAD_WAKE_FREQUENCY);
try {
// here we wait until TPE terminates, which is either naturally or by
// exceptions in the execution of the threads
while (!tpe.awaitTermination(threadWakeFrequency, TimeUnit.MILLISECONDS)) {
// printing out rough estimate, so as to not introduce
// AtomicInteger
LOG.info("Locality checking is underway: { Scanned Regions : "
+ ((ThreadPoolExecutor) tpe).getCompletedTaskCount() + "/"
+ ((ThreadPoolExecutor) tpe).getTaskCount() + " }");
}
} catch (InterruptedException e) {
Thread.currentThread().interrupt();
throw (InterruptedIOException) new InterruptedIOException().initCause(e);
}
}
long overhead = EnvironmentEdgeManager.currentTime() - startTime;
LOG.info("Scan DFS for locality info takes {}ms", overhead);
}
/**
* Do our short circuit read setup. Checks buffer size to use and whether to do checksumming in
* hbase or hdfs.
*/
public static void setupShortCircuitRead(final Configuration conf) {
// Check that the user has not set the "dfs.client.read.shortcircuit.skip.checksum" property.
boolean shortCircuitSkipChecksum =
conf.getBoolean("dfs.client.read.shortcircuit.skip.checksum", false);
boolean useHBaseChecksum = conf.getBoolean(HConstants.HBASE_CHECKSUM_VERIFICATION, true);
if (shortCircuitSkipChecksum) {
LOG.warn("Configuration \"dfs.client.read.shortcircuit.skip.checksum\" should not "
+ "be set to true."
+ (useHBaseChecksum
? " HBase checksum doesn't require "
+ "it, see https://issues.apache.org/jira/browse/HBASE-6868."
: ""));
assert !shortCircuitSkipChecksum; // this will fail if assertions are on
}
checkShortCircuitReadBufferSize(conf);
}
/**
* Check if short circuit read buffer size is set and if not, set it to hbase value.
*/
public static void checkShortCircuitReadBufferSize(final Configuration conf) {
final int defaultSize = HConstants.DEFAULT_BLOCKSIZE * 2;
final int notSet = -1;
// DFSConfigKeys.DFS_CLIENT_READ_SHORTCIRCUIT_BUFFER_SIZE_KEY is only defined in h2
final String dfsKey = "dfs.client.read.shortcircuit.buffer.size";
int size = conf.getInt(dfsKey, notSet);
// If a size is set, return -- we will use it.
if (size != notSet) return;
// But short circuit buffer size is normally not set. Put in place the hbase wanted size.
int hbaseSize = conf.getInt("hbase." + dfsKey, defaultSize);
conf.setIfUnset(dfsKey, Integer.toString(hbaseSize));
}
/**
* Returns The DFSClient DFSHedgedReadMetrics instance or null if can't be found or not on hdfs.
*/
public static DFSHedgedReadMetrics getDFSHedgedReadMetrics(final Configuration c)
throws IOException {
if (!CommonFSUtils.isHDFS(c)) {
return null;
}
// getHedgedReadMetrics is package private. Get the DFSClient instance that is internal
// to the DFS FS instance and make the method getHedgedReadMetrics accessible, then invoke it
// to get the singleton instance of DFSHedgedReadMetrics shared by DFSClients.
final String name = "getHedgedReadMetrics";
DFSClient dfsclient = ((DistributedFileSystem) FileSystem.get(c)).getClient();
Method m;
try {
m = dfsclient.getClass().getDeclaredMethod(name);
} catch (NoSuchMethodException e) {
LOG.warn(
"Failed find method " + name + " in dfsclient; no hedged read metrics: " + e.getMessage());
return null;
} catch (SecurityException e) {
LOG.warn(
"Failed find method " + name + " in dfsclient; no hedged read metrics: " + e.getMessage());
return null;
}
m.setAccessible(true);
try {
return (DFSHedgedReadMetrics) m.invoke(dfsclient);
} catch (IllegalAccessException | IllegalArgumentException | InvocationTargetException e) {
LOG.warn("Failed invoking method " + name + " on dfsclient; no hedged read metrics: "
+ e.getMessage());
return null;
}
}
public static List copyFilesParallel(FileSystem srcFS, Path src, FileSystem dstFS, Path dst,
Configuration conf, int threads) throws IOException {
ExecutorService pool = Executors.newFixedThreadPool(threads);
List> futures = new ArrayList<>();
List traversedPaths;
try {
traversedPaths = copyFiles(srcFS, src, dstFS, dst, conf, pool, futures);
for (Future future : futures) {
future.get();
}
} catch (ExecutionException | InterruptedException | IOException e) {
throw new IOException("Copy snapshot reference files failed", e);
} finally {
pool.shutdownNow();
}
return traversedPaths;
}
private static List copyFiles(FileSystem srcFS, Path src, FileSystem dstFS, Path dst,
Configuration conf, ExecutorService pool, List> futures) throws IOException {
List traversedPaths = new ArrayList<>();
traversedPaths.add(dst);
FileStatus currentFileStatus = srcFS.getFileStatus(src);
if (currentFileStatus.isDirectory()) {
if (!dstFS.mkdirs(dst)) {
throw new IOException("Create directory failed: " + dst);
}
FileStatus[] subPaths = srcFS.listStatus(src);
for (FileStatus subPath : subPaths) {
traversedPaths.addAll(copyFiles(srcFS, subPath.getPath(), dstFS,
new Path(dst, subPath.getPath().getName()), conf, pool, futures));
}
} else {
Future future = pool.submit(() -> {
FileUtil.copy(srcFS, src, dstFS, dst, false, false, conf);
return null;
});
futures.add(future);
}
return traversedPaths;
}
/** Returns A set containing all namenode addresses of fs */
private static Set getNNAddresses(DistributedFileSystem fs,
Configuration conf) {
Set addresses = new HashSet<>();
String serviceName = fs.getCanonicalServiceName();
if (serviceName.startsWith("ha-hdfs")) {
try {
Map> addressMap =
DFSUtil.getNNServiceRpcAddressesForCluster(conf);
String nameService = serviceName.substring(serviceName.indexOf(":") + 1);
if (addressMap.containsKey(nameService)) {
Map nnMap = addressMap.get(nameService);
for (Map.Entry e2 : nnMap.entrySet()) {
InetSocketAddress addr = e2.getValue();
addresses.add(addr);
}
}
} catch (Exception e) {
LOG.warn("DFSUtil.getNNServiceRpcAddresses failed. serviceName=" + serviceName, e);
}
} else {
URI uri = fs.getUri();
int port = uri.getPort();
if (port < 0) {
int idx = serviceName.indexOf(':');
port = Integer.parseInt(serviceName.substring(idx + 1));
}
InetSocketAddress addr = new InetSocketAddress(uri.getHost(), port);
addresses.add(addr);
}
return addresses;
}
/**
* @param conf the Configuration of HBase
* @return Whether srcFs and desFs are on same hdfs or not
*/
public static boolean isSameHdfs(Configuration conf, FileSystem srcFs, FileSystem desFs) {
// By getCanonicalServiceName, we could make sure both srcFs and desFs
// show a unified format which contains scheme, host and port.
String srcServiceName = srcFs.getCanonicalServiceName();
String desServiceName = desFs.getCanonicalServiceName();
if (srcServiceName == null || desServiceName == null) {
return false;
}
if (srcServiceName.equals(desServiceName)) {
return true;
}
if (srcServiceName.startsWith("ha-hdfs") && desServiceName.startsWith("ha-hdfs")) {
Collection internalNameServices =
conf.getTrimmedStringCollection("dfs.internal.nameservices");
if (!internalNameServices.isEmpty()) {
if (internalNameServices.contains(srcServiceName.split(":")[1])) {
return true;
} else {
return false;
}
}
}
if (srcFs instanceof DistributedFileSystem && desFs instanceof DistributedFileSystem) {
// If one serviceName is an HA format while the other is a non-HA format,
// maybe they refer to the same FileSystem.
// For example, srcFs is "ha-hdfs://nameservices" and desFs is "hdfs://activeNamenode:port"
Set srcAddrs = getNNAddresses((DistributedFileSystem) srcFs, conf);
Set desAddrs = getNNAddresses((DistributedFileSystem) desFs, conf);
if (Sets.intersection(srcAddrs, desAddrs).size() > 0) {
return true;
}
}
return false;
}
}
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