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Apache Ignite® is a Distributed Database For High-Performance Computing With In-Memory Speed.
/*
* Licensed to the Apache Software Foundation (ASF) under one or more
* contributor license agreements. See the NOTICE file distributed with
* this work for additional information regarding copyright ownership.
* The ASF licenses this file to You under the Apache License, Version 2.0
* (the "License"); you may not use this file except in compliance with
* the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package org.apache.ignite.ml.genetic;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.Random;
import javax.cache.Cache.Entry;
import org.apache.ignite.Ignite;
import org.apache.ignite.IgniteCache;
import org.apache.ignite.IgniteException;
import org.apache.ignite.cache.affinity.Affinity;
import org.apache.ignite.cache.query.QueryCursor;
import org.apache.ignite.cache.query.SqlQuery;
import org.apache.ignite.cluster.ClusterNode;
import org.apache.ignite.compute.ComputeJob;
import org.apache.ignite.compute.ComputeJobResult;
import org.apache.ignite.compute.ComputeJobResultPolicy;
import org.apache.ignite.compute.ComputeTaskAdapter;
import org.apache.ignite.resources.IgniteInstanceResource;
import org.apache.ignite.ml.genetic.parameter.GAConfiguration;
import org.apache.ignite.ml.genetic.parameter.GAGridConstants;
/**
* Responsible for applying mutation on respective chromosomes.
*
* MutateTask leverages Ignite's data affinity capabilities for routing MutateJobs to primary IgniteNode where
* chromosomes reside.
*/
public class MutateTask extends ComputeTaskAdapter, Boolean> {
/** Ignite instance */
@IgniteInstanceResource
private Ignite ignite = null;
/** GAConfiguration */
private GAConfiguration config = null;
/**
* @param config GAConfiguration
*/
public MutateTask(GAConfiguration config) {
this.config = config;
}
/**
* choose mutated genes.
*
* @return Gene primary keys
*/
private List getMutatedGenes() {
List mutatedGenes = new ArrayList();
config.getChromosomeLength();
for (int i = 0; i < config.getChromosomeLength(); i++)
mutatedGenes.add(selectGene(i));
return mutatedGenes;
}
/**
* @param nodes List of ClusterNode
* @param chromosomeKeys Primary keys for respective chromosomes
*/
public Map map(List nodes, List chromosomeKeys) throws IgniteException {
Map map = new HashMap<>();
Affinity affinity = ignite.affinity(GAGridConstants.POPULATION_CACHE);
for (Long key : chromosomeKeys) {
MutateJob ajob = new MutateJob(key, getMutatedGenes(), this.config.getMutationRate());
ClusterNode primary = affinity.mapKeyToNode(key);
map.put(ajob, primary);
}
return map;
}
/**
* We return TRUE if success, else Exection is thrown.
*
* @param list List of ComputeJobResult
* @return Boolean value
*/
public Boolean reduce(List list) throws IgniteException {
return Boolean.TRUE;
}
/**
* @param res ComputeJobResult
* @param rcvd List of ComputeJobResult
* @return ComputeJobResultPolicy
*/
public ComputeJobResultPolicy result(ComputeJobResult res, List rcvd) {
IgniteException err = res.getException();
if (err != null)
return ComputeJobResultPolicy.FAILOVER;
// If there is no exception, wait for all job results.
return ComputeJobResultPolicy.WAIT;
}
/**
* select a gene from the Gene pool
*
* @return Primary key of Gene
*/
private long selectAnyGene() {
int idx = selectRandomIndex(config.getGenePool().size());
Gene gene = config.getGenePool().get(idx);
return gene.id();
}
/**
* select a gene based from the Gene pool
*
* @param k Gene index in Chromosome.
* @return Primary key of Gene
*/
private long selectGene(int k) {
if (config.getChromosomeCriteria() == null)
return (selectAnyGene());
else
return (selectGeneByChromsomeCriteria(k));
}
/**
* method assumes ChromosomeCriteria is set.
*
* @param k Gene index in Chromosome.
* @return Primary key of Gene
*/
private long selectGeneByChromsomeCriteria(int k) {
List genes = new ArrayList();
StringBuffer sbSqlClause = new StringBuffer("_val like '");
sbSqlClause.append("%");
sbSqlClause.append(config.getChromosomeCriteria().getCriteria().get(k));
sbSqlClause.append("%'");
IgniteCache cache = ignite.cache(GAGridConstants.GENE_CACHE);
SqlQuery sql = new SqlQuery(Gene.class, sbSqlClause.toString());
try (QueryCursor> cursor = cache.query(sql)) {
for (Entry e : cursor)
genes.add(e.getValue());
}
int idx = selectRandomIndex(genes.size());
Gene gene = genes.get(idx);
return gene.id();
}
/**
* select an index at random
*
* @param sizeOfGenePool Size of gene pool
* @return Index of Gene to be selected
*/
private int selectRandomIndex(int sizeOfGenePool) {
Random randomGenerator = new Random();
int index = randomGenerator.nextInt(sizeOfGenePool);
return index;
}
}
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