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Optional components of Mahout which generally support interaction with third party systems, formats, APIs, etc.

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/**
 * Licensed to the Apache Software Foundation (ASF) under one or more
 * contributor license agreements.  See the NOTICE file distributed with
 * this work for additional information regarding copyright ownership.
 * The ASF licenses this file to You under the Apache License, Version 2.0
 * (the "License"); you may not use this file except in compliance with
 * the License.  You may obtain a copy of the License at
 *
 *     http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */

package org.apache.mahout.text.wikipedia;

import java.io.BufferedWriter;
import java.io.File;
import java.io.FileInputStream;
import java.io.IOException;
import java.io.OutputStreamWriter;
import java.net.URI;
import java.text.DecimalFormat;
import java.text.NumberFormat;

import org.apache.commons.cli2.CommandLine;
import org.apache.commons.cli2.Group;
import org.apache.commons.cli2.Option;
import org.apache.commons.cli2.OptionException;
import org.apache.commons.cli2.builder.ArgumentBuilder;
import org.apache.commons.cli2.builder.DefaultOptionBuilder;
import org.apache.commons.cli2.builder.GroupBuilder;
import org.apache.commons.cli2.commandline.Parser;
import org.apache.hadoop.conf.Configuration;
import org.apache.hadoop.fs.FileSystem;
import org.apache.hadoop.fs.Path;
import org.apache.hadoop.io.compress.BZip2Codec;
import org.apache.hadoop.io.compress.CompressionCodec;
import org.apache.mahout.common.CommandLineUtil;
import org.apache.mahout.common.iterator.FileLineIterator;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;

/**
 * 
The Bayes example package provides some helper classes for training the Naive Bayes classifier
 * on the Twenty Newsgroups data. See {@code PrepareTwentyNewsgroups}
 * for details on running the trainer and
 * formatting the Twenty Newsgroups data properly for the training.

 *
 * 
The easiest way to prepare the data is to use the ant task in core/build.xml:

 *
 * 
{@code ant extract-20news-18828}

 *
 * 
This runs the arg line:

 *
 * 
{@code -p $\{working.dir\}/20news-18828/ -o $\{working.dir\}/20news-18828-collapse -a $\{analyzer\} -c UTF-8}

 *
 * 
To Run the Wikipedia examples (assumes you've built the Mahout Job jar):

 *
 * 
    
 *  
  1. Download the Wikipedia Dataset. Use the Ant target: {@code ant enwiki-files}
    2. 
 *  
  2. Chunk the data using the WikipediaXmlSplitter (from the Hadoop home):
 *   {@code bin/hadoop jar $MAHOUT_HOME/target/mahout-examples-0.x
 *   org.apache.mahout.classifier.bayes.WikipediaXmlSplitter
 *   -d $MAHOUT_HOME/examples/temp/enwiki-latest-pages-articles.xml
 *   -o $MAHOUT_HOME/examples/work/wikipedia/chunks/ -c 64}
    3. 
 * 

 */
public final class WikipediaXmlSplitter {

  private static final Logger log = LoggerFactory.getLogger(WikipediaXmlSplitter.class);

  private WikipediaXmlSplitter() { }

  public static void main(String[] args) throws IOException {
    DefaultOptionBuilder obuilder = new DefaultOptionBuilder();
    ArgumentBuilder abuilder = new ArgumentBuilder();
    GroupBuilder gbuilder = new GroupBuilder();

    Option dumpFileOpt = obuilder.withLongName("dumpFile").withRequired(true).withArgument(
      abuilder.withName("dumpFile").withMinimum(1).withMaximum(1).create()).withDescription(
      "The path to the wikipedia dump file (.bz2 or uncompressed)").withShortName("d").create();

    Option outputDirOpt = obuilder.withLongName("outputDir").withRequired(true).withArgument(
      abuilder.withName("outputDir").withMinimum(1).withMaximum(1).create()).withDescription(
      "The output directory to place the splits in:\n"
          + "local files:\n\t/var/data/wikipedia-xml-chunks or\n\tfile:///var/data/wikipedia-xml-chunks\n"
          + "Hadoop DFS:\n\thdfs://wikipedia-xml-chunks\n"
          + "AWS S3 (blocks):\n\ts3://bucket-name/wikipedia-xml-chunks\n"
          + "AWS S3 (native files):\n\ts3n://bucket-name/wikipedia-xml-chunks\n")

    .withShortName("o").create();

    Option s3IdOpt = obuilder.withLongName("s3ID").withRequired(false).withArgument(
      abuilder.withName("s3Id").withMinimum(1).withMaximum(1).create()).withDescription("Amazon S3 ID key")
        .withShortName("i").create();
    Option s3SecretOpt = obuilder.withLongName("s3Secret").withRequired(false).withArgument(
      abuilder.withName("s3Secret").withMinimum(1).withMaximum(1).create()).withDescription(
      "Amazon S3 secret key").withShortName("s").create();

    Option chunkSizeOpt = obuilder.withLongName("chunkSize").withRequired(true).withArgument(
      abuilder.withName("chunkSize").withMinimum(1).withMaximum(1).create()).withDescription(
      "The Size of the chunk, in megabytes").withShortName("c").create();
    Option numChunksOpt = obuilder
        .withLongName("numChunks")
        .withRequired(false)
        .withArgument(abuilder.withName("numChunks").withMinimum(1).withMaximum(1).create())
        .withDescription(
          "The maximum number of chunks to create.  If specified, program will only create a subset of the chunks")
        .withShortName("n").create();
    Group group = gbuilder.withName("Options").withOption(dumpFileOpt).withOption(outputDirOpt).withOption(
      chunkSizeOpt).withOption(numChunksOpt).withOption(s3IdOpt).withOption(s3SecretOpt).create();

    Parser parser = new Parser();
    parser.setGroup(group);
    CommandLine cmdLine;
    try {
      cmdLine = parser.parse(args);
    } catch (OptionException e) {
      log.error("Error while parsing options", e);
      CommandLineUtil.printHelp(group);
      return;
    }

    Configuration conf = new Configuration();
    String dumpFilePath = (String) cmdLine.getValue(dumpFileOpt);
    String outputDirPath = (String) cmdLine.getValue(outputDirOpt);

    if (cmdLine.hasOption(s3IdOpt)) {
      String id = (String) cmdLine.getValue(s3IdOpt);
      conf.set("fs.s3n.awsAccessKeyId", id);
      conf.set("fs.s3.awsAccessKeyId", id);
    }
    if (cmdLine.hasOption(s3SecretOpt)) {
      String secret = (String) cmdLine.getValue(s3SecretOpt);
      conf.set("fs.s3n.awsSecretAccessKey", secret);
      conf.set("fs.s3.awsSecretAccessKey", secret);
    }
    // do not compute crc file when using local FS
    conf.set("fs.file.impl", "org.apache.hadoop.fs.RawLocalFileSystem");
    FileSystem fs = FileSystem.get(URI.create(outputDirPath), conf);

    int chunkSize = 1024 * 1024 * Integer.parseInt((String) cmdLine.getValue(chunkSizeOpt));

    int numChunks = Integer.MAX_VALUE;
    if (cmdLine.hasOption(numChunksOpt)) {
      numChunks = Integer.parseInt((String) cmdLine.getValue(numChunksOpt));
    }

    String header = "\n" + "  \n" + "Wikipedia\n"
                    + "    http://en.wikipedia.org/wiki/Main_Page\n"
                    + "    MediaWiki 1.13alpha\n" + "    first-letter\n"
                    + "    \n" + "      Media\n"
                    + "      Special\n" + "      \n"
                    + "      Talk\n"
                    + "      User\n"
                    + "      User talk\n"
                    + "      Wikipedia\n"
                    + "      Wikipedia talk\n"
                    + "      Image\n"
                    + "      Image talk\n"
                    + "      MediaWiki\n"
                    + "      MediaWiki talk\n"
                    + "      Template\n"
                    + "      Template talk\n"
                    + "      Help\n"
                    + "      Help talk\n"
                    + "      Category\n"
                    + "      Category talk\n"
                    + "      Portal\n"
                    + "      Portal talk\n" + "    \n"
                    + "  \n";

    StringBuilder content = new StringBuilder();
    content.append(header);
    NumberFormat decimalFormatter = new DecimalFormat("0000");
    File dumpFile = new File(dumpFilePath);

    // If the specified path for the input file is incorrect, return immediately
    if (!dumpFile.exists()) {
      log.error("Input file path {} doesn't exist", dumpFilePath);
      return;
    }

    FileLineIterator it;
    if (dumpFilePath.endsWith(".bz2")) {
      // default compression format from http://download.wikimedia.org
      CompressionCodec codec = new BZip2Codec();
      it = new FileLineIterator(codec.createInputStream(new FileInputStream(dumpFile)));
    } else {
      // assume the user has previously de-compressed the dump file
      it = new FileLineIterator(dumpFile);
    }
    int fileNumber = 0;
    while (it.hasNext()) {
      String thisLine = it.next();
      if (thisLine.trim().startsWith("")) {
        boolean end = false;
        while (!thisLine.trim().startsWith("")) {
          content.append(thisLine).append('\n');
          if (it.hasNext()) {
            thisLine = it.next();
          } else {
            end = true;
            break;
          }
        }
        content.append(thisLine).append('\n');

        if (content.length() > chunkSize || end) {
          content.append("");
          fileNumber++;
          String filename = outputDirPath + "/chunk-" + decimalFormatter.format(fileNumber) + ".xml";
          try (BufferedWriter chunkWriter =
                   new BufferedWriter(new OutputStreamWriter(fs.create(new Path(filename)), "UTF-8"))) {
            chunkWriter.write(content.toString(), 0, content.length());
          }
          if (fileNumber >= numChunks) {
            break;
          }
          content = new StringBuilder();
          content.append(header);
        }
      }
    }
  }
}




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