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Optional components of Mahout which generally support interaction with third party systems,
formats, APIs, etc.
/**
* Licensed to the Apache Software Foundation (ASF) under one or more
* contributor license agreements. See the NOTICE file distributed with
* this work for additional information regarding copyright ownership.
* The ASF licenses this file to You under the Apache License, Version 2.0
* (the "License"); you may not use this file except in compliance with
* the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package org.apache.mahout.utils;
import java.io.IOException;
import java.io.Serializable;
import java.util.Random;
import org.apache.hadoop.conf.Configuration;
import org.apache.hadoop.fs.FileSystem;
import org.apache.hadoop.fs.Path;
import org.apache.hadoop.io.Writable;
import org.apache.hadoop.io.WritableComparable;
import org.apache.hadoop.io.WritableComparator;
import org.apache.hadoop.mapreduce.Job;
import org.apache.hadoop.mapreduce.Mapper;
import org.apache.hadoop.mapreduce.Reducer;
import org.apache.hadoop.mapreduce.lib.input.FileInputFormat;
import org.apache.hadoop.mapreduce.lib.input.SequenceFileInputFormat;
import org.apache.hadoop.mapreduce.lib.output.FileOutputFormat;
import org.apache.hadoop.mapreduce.lib.output.MultipleOutputs;
import org.apache.hadoop.mapreduce.lib.output.SequenceFileOutputFormat;
import org.apache.mahout.common.Pair;
import org.apache.mahout.common.RandomUtils;
import org.apache.mahout.common.iterator.sequencefile.PathFilters;
import org.apache.mahout.common.iterator.sequencefile.PathType;
import org.apache.mahout.common.iterator.sequencefile.SequenceFileDirIterator;
/**
* Class which implements a map reduce version of SplitInput.
* This class takes a SequenceFile input, e.g. a set of training data
* for a learning algorithm, downsamples it, applies a random
* permutation and splits it into test and training sets
*/
public final class SplitInputJob {
private static final String DOWNSAMPLING_FACTOR = "SplitInputJob.downsamplingFactor";
private static final String RANDOM_SELECTION_PCT = "SplitInputJob.randomSelectionPct";
private static final String TRAINING_TAG = "training";
private static final String TEST_TAG = "test";
private SplitInputJob() {}
/**
* Run job to downsample, randomly permute and split data into test and
* training sets. This job takes a SequenceFile as input and outputs two
* SequenceFiles test-r-00000 and training-r-00000 which contain the test and
* training sets respectively
*
* @param initialConf
* Initial configuration
* @param inputPath
* path to input data SequenceFile
* @param outputPath
* path for output data SequenceFiles
* @param keepPct
* percentage of key value pairs in input to keep. The rest are
* discarded
* @param randomSelectionPercent
* percentage of key value pairs to allocate to test set. Remainder
* are allocated to training set
*/
@SuppressWarnings("rawtypes")
public static void run(Configuration initialConf, Path inputPath,
Path outputPath, int keepPct, float randomSelectionPercent)
throws IOException, ClassNotFoundException, InterruptedException {
int downsamplingFactor = (int) (100.0 / keepPct);
initialConf.setInt(DOWNSAMPLING_FACTOR, downsamplingFactor);
initialConf.setFloat(RANDOM_SELECTION_PCT, randomSelectionPercent);
// Determine class of keys and values
FileSystem fs = FileSystem.get(initialConf);
SequenceFileDirIterator iterator =
new SequenceFileDirIterator<>(inputPath,
PathType.LIST, PathFilters.partFilter(), null, false, fs.getConf());
Class keyClass;
Class valueClass;
if (iterator.hasNext()) {
Pair pair = iterator.next();
keyClass = pair.getFirst().getClass();
valueClass = pair.getSecond().getClass();
} else {
throw new IllegalStateException("Couldn't determine class of the input values");
}
Job job = new Job(new Configuration(initialConf));
MultipleOutputs.addNamedOutput(job, TRAINING_TAG, SequenceFileOutputFormat.class, keyClass, valueClass);
MultipleOutputs.addNamedOutput(job, TEST_TAG, SequenceFileOutputFormat.class, keyClass, valueClass);
job.setJarByClass(SplitInputJob.class);
FileInputFormat.addInputPath(job, inputPath);
FileOutputFormat.setOutputPath(job, outputPath);
job.setNumReduceTasks(1);
job.setInputFormatClass(SequenceFileInputFormat.class);
job.setOutputFormatClass(SequenceFileOutputFormat.class);
job.setMapperClass(SplitInputMapper.class);
job.setReducerClass(SplitInputReducer.class);
job.setSortComparatorClass(SplitInputComparator.class);
job.setOutputKeyClass(keyClass);
job.setOutputValueClass(valueClass);
job.submit();
boolean succeeded = job.waitForCompletion(true);
if (!succeeded) {
throw new IllegalStateException("Job failed!");
}
}
/** Mapper which downsamples the input by downsamplingFactor */
public static class SplitInputMapper extends
Mapper, Writable, WritableComparable, Writable> {
private int downsamplingFactor;
@Override
public void setup(Context ctx) {
downsamplingFactor = ctx.getConfiguration().getInt(DOWNSAMPLING_FACTOR, 1);
}
/** Only run map() for one out of every downsampleFactor inputs */
@Override
public void run(Context context) throws IOException, InterruptedException {
setup(context);
int i = 0;
while (context.nextKeyValue()) {
if (i % downsamplingFactor == 0) {
map(context.getCurrentKey(), context.getCurrentValue(), context);
}
i++;
}
cleanup(context);
}
}
/** Reducer which uses MultipleOutputs to randomly allocate key value pairs between test and training outputs */
public static class SplitInputReducer extends
Reducer, Writable, WritableComparable, Writable> {
private MultipleOutputs multipleOutputs;
private final Random rnd = RandomUtils.getRandom();
private float randomSelectionPercent;
@Override
protected void setup(Context ctx) throws IOException {
randomSelectionPercent = ctx.getConfiguration().getFloat(RANDOM_SELECTION_PCT, 0);
multipleOutputs = new MultipleOutputs(ctx);
}
/**
* Randomly allocate key value pairs between test and training sets.
* randomSelectionPercent of the pairs will go to the test set.
*/
@Override
protected void reduce(WritableComparable key, Iterable values,
Context context) throws IOException, InterruptedException {
for (Writable value : values) {
if (rnd.nextInt(100) < randomSelectionPercent) {
multipleOutputs.write(TEST_TAG, key, value);
} else {
multipleOutputs.write(TRAINING_TAG, key, value);
}
}
}
@Override
protected void cleanup(Context context) throws IOException {
try {
multipleOutputs.close();
} catch (InterruptedException e) {
throw new IOException(e);
}
}
}
/** Randomly permute key value pairs */
public static class SplitInputComparator extends WritableComparator implements Serializable {
private final Random rnd = RandomUtils.getRandom();
protected SplitInputComparator() {
super(WritableComparable.class);
}
@Override
public int compare(byte[] b1, int s1, int l1, byte[] b2, int s2, int l2) {
if (rnd.nextBoolean()) {
return 1;
} else {
return -1;
}
}
}
}