org.apache.mahout.cf.taste.impl.model.file.FileDataModel Maven / Gradle / Ivy
/**
* Licensed to the Apache Software Foundation (ASF) under one or more
* contributor license agreements. See the NOTICE file distributed with
* this work for additional information regarding copyright ownership.
* The ASF licenses this file to You under the Apache License, Version 2.0
* (the "License"); you may not use this file except in compliance with
* the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package org.apache.mahout.cf.taste.impl.model.file;
import java.io.File;
import java.io.FileFilter;
import java.io.FileNotFoundException;
import java.io.IOException;
import java.util.ArrayList;
import java.util.Collection;
import java.util.Iterator;
import java.util.List;
import java.util.Map;
import java.util.TreeMap;
import java.util.concurrent.locks.ReentrantLock;
import com.google.common.base.Preconditions;
import com.google.common.base.Splitter;
import com.google.common.io.Closeables;
import org.apache.mahout.cf.taste.common.Refreshable;
import org.apache.mahout.cf.taste.common.TasteException;
import org.apache.mahout.cf.taste.impl.common.FastByIDMap;
import org.apache.mahout.cf.taste.impl.common.FastIDSet;
import org.apache.mahout.cf.taste.impl.common.LongPrimitiveIterator;
import org.apache.mahout.cf.taste.impl.model.AbstractDataModel;
import org.apache.mahout.cf.taste.impl.model.GenericBooleanPrefDataModel;
import org.apache.mahout.cf.taste.impl.model.GenericDataModel;
import org.apache.mahout.cf.taste.impl.model.GenericPreference;
import org.apache.mahout.cf.taste.impl.model.GenericUserPreferenceArray;
import org.apache.mahout.cf.taste.model.DataModel;
import org.apache.mahout.cf.taste.model.Preference;
import org.apache.mahout.cf.taste.model.PreferenceArray;
import org.apache.mahout.common.iterator.FileLineIterator;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
*
* A {@link DataModel} backed by a delimited file. This class expects a file where each line
* contains a user ID, followed by item ID, followed by optional preference value, followed by
* optional timestamp. Commas or tabs delimit fields:
*
*
* {@code userID,itemID[,preference[,timestamp]]}
*
*
* Preference value is optional to accommodate applications that have no notion of a
* preference value (that is, the user simply expresses a
* preference for an item, but no degree of preference).
*
*
*
* The preference value is assumed to be parseable as a {@code double}. The user IDs and item IDs are
* read parsed as {@code long}s. The timestamp, if present, is assumed to be parseable as a
* {@code long}, though this can be overridden via {@link #readTimestampFromString(String)}.
* The preference value may be empty, to indicate "no preference value", but cannot be empty. That is,
* this is legal:
*
*
* {@code 123,456,,129050099059}
*
* But this isn't:
*
* {@code 123,456,129050099059}
*
*
* It is also acceptable for the lines to contain additional fields. Fields beyond the third will be ignored.
* An empty line, or one that begins with '#' will be ignored as a comment.
*
*
*
* This class will reload data from the data file when {@link #refresh(Collection)} is called, unless the file
* has been reloaded very recently already.
*
*
*
* This class will also look for update "delta" files in the same directory, with file names that start the
* same way (up to the first period). These files have the same format, and provide updated data that
* supersedes what is in the main data file. This is a mechanism that allows an application to push updates to
* {@link FileDataModel} without re-copying the entire data file.
*
*
*
* One small format difference exists. Update files must also be able to express deletes.
* This is done by ending with a blank preference value, as in "123,456,".
*
*
*
* Note that it's all-or-nothing -- all of the items in the file must express no preference, or the all must.
* These cannot be mixed. Put another way there will always be the same number of delimiters on every line of
* the file!
*
*
*
* This class is not intended for use with very large amounts of data (over, say, tens of millions of rows).
* For that, a JDBC-backed {@link DataModel} and a database are more appropriate.
*
*
*
* It is possible and likely useful to subclass this class and customize its behavior to accommodate
* application-specific needs and input formats. See {@link #processLine(String, FastByIDMap, FastByIDMap, boolean)} and
* {@link #processLineWithoutID(String, FastByIDMap, FastByIDMap)}
*/
public class FileDataModel extends AbstractDataModel {
private static final Logger log = LoggerFactory.getLogger(FileDataModel.class);
public static final long DEFAULT_MIN_RELOAD_INTERVAL_MS = 60 * 1000L; // 1 minute?
private static final char COMMENT_CHAR = '#';
private static final char[] DELIMIETERS = {',', '\t'};
private final File dataFile;
private long lastModified;
private long lastUpdateFileModified;
private final Splitter delimiterPattern;
private final boolean hasPrefValues;
private DataModel delegate;
private final ReentrantLock reloadLock;
private final boolean transpose;
private final long minReloadIntervalMS;
/**
* @param dataFile
* file containing preferences data. If file is compressed (and name ends in .gz or .zip
* accordingly) it will be decompressed as it is read)
* @throws FileNotFoundException
* if dataFile does not exist
* @throws IOException
* if file can't be read
*/
public FileDataModel(File dataFile) throws IOException {
this(dataFile, false, DEFAULT_MIN_RELOAD_INTERVAL_MS);
}
/**
* @param delimiterRegex If your data file don't use '\t' or ',' as delimiter, you can specify
* a custom regex pattern.
*/
public FileDataModel(File dataFile, String delimiterRegex) throws IOException {
this(dataFile, false, DEFAULT_MIN_RELOAD_INTERVAL_MS, delimiterRegex);
}
/**
* @param transpose
* transposes user IDs and item IDs -- convenient for 'flipping' the data model this way
* @param minReloadIntervalMS
* the minimum interval in milliseconds after which a full reload of the original datafile is done
* when refresh() is called
* @see #FileDataModel(File)
*/
public FileDataModel(File dataFile, boolean transpose, long minReloadIntervalMS) throws IOException {
this(dataFile, transpose, minReloadIntervalMS, null);
}
/**
* @param delimiterRegex If your data file don't use '\t' or ',' as delimiters, you can specify
* user own using regex pattern.
* @throws IOException
*/
public FileDataModel(File dataFile, boolean transpose, long minReloadIntervalMS, String delimiterRegex)
throws IOException {
this.dataFile = Preconditions.checkNotNull(dataFile.getAbsoluteFile());
if (!dataFile.exists() || dataFile.isDirectory()) {
throw new FileNotFoundException(dataFile.toString());
}
Preconditions.checkArgument(dataFile.length() > 0L, "dataFile is empty");
Preconditions.checkArgument(minReloadIntervalMS >= 0L, "minReloadIntervalMs must be non-negative");
log.info("Creating FileDataModel for file {}", dataFile);
this.lastModified = dataFile.lastModified();
this.lastUpdateFileModified = readLastUpdateFileModified();
FileLineIterator iterator = new FileLineIterator(dataFile, false);
String firstLine = iterator.peek();
while (firstLine.isEmpty() || firstLine.charAt(0) == COMMENT_CHAR) {
iterator.next();
firstLine = iterator.peek();
}
Closeables.close(iterator, true);
char delimiter;
if (delimiterRegex == null) {
delimiter = determineDelimiter(firstLine);
delimiterPattern = Splitter.on(delimiter);
} else {
delimiter = '\0';
delimiterPattern = Splitter.onPattern(delimiterRegex);
if (!delimiterPattern.split(firstLine).iterator().hasNext()) {
throw new IllegalArgumentException("Did not find a delimiter(pattern) in first line");
}
}
List firstLineSplit = new ArrayList<>();
for (String token : delimiterPattern.split(firstLine)) {
firstLineSplit.add(token);
}
// If preference value exists and isn't empty then the file is specifying pref values
hasPrefValues = firstLineSplit.size() >= 3 && !firstLineSplit.get(2).isEmpty();
this.reloadLock = new ReentrantLock();
this.transpose = transpose;
this.minReloadIntervalMS = minReloadIntervalMS;
reload();
}
public File getDataFile() {
return dataFile;
}
protected void reload() {
if (reloadLock.tryLock()) {
try {
delegate = buildModel();
} catch (IOException ioe) {
log.warn("Exception while reloading", ioe);
} finally {
reloadLock.unlock();
}
}
}
protected DataModel buildModel() throws IOException {
long newLastModified = dataFile.lastModified();
long newLastUpdateFileModified = readLastUpdateFileModified();
boolean loadFreshData = delegate == null || newLastModified > lastModified + minReloadIntervalMS;
long oldLastUpdateFileModifieid = lastUpdateFileModified;
lastModified = newLastModified;
lastUpdateFileModified = newLastUpdateFileModified;
FastByIDMap> timestamps = new FastByIDMap<>();
if (hasPrefValues) {
if (loadFreshData) {
FastByIDMap> data = new FastByIDMap<>();
FileLineIterator iterator = new FileLineIterator(dataFile, false);
processFile(iterator, data, timestamps, false);
for (File updateFile : findUpdateFilesAfter(newLastModified)) {
processFile(new FileLineIterator(updateFile, false), data, timestamps, false);
}
return new GenericDataModel(GenericDataModel.toDataMap(data, true), timestamps);
} else {
FastByIDMap rawData = ((GenericDataModel) delegate).getRawUserData();
for (File updateFile : findUpdateFilesAfter(Math.max(oldLastUpdateFileModifieid, newLastModified))) {
processFile(new FileLineIterator(updateFile, false), rawData, timestamps, true);
}
return new GenericDataModel(rawData, timestamps);
}
} else {
if (loadFreshData) {
FastByIDMap data = new FastByIDMap<>();
FileLineIterator iterator = new FileLineIterator(dataFile, false);
processFileWithoutID(iterator, data, timestamps);
for (File updateFile : findUpdateFilesAfter(newLastModified)) {
processFileWithoutID(new FileLineIterator(updateFile, false), data, timestamps);
}
return new GenericBooleanPrefDataModel(data, timestamps);
} else {
FastByIDMap rawData = ((GenericBooleanPrefDataModel) delegate).getRawUserData();
for (File updateFile : findUpdateFilesAfter(Math.max(oldLastUpdateFileModifieid, newLastModified))) {
processFileWithoutID(new FileLineIterator(updateFile, false), rawData, timestamps);
}
return new GenericBooleanPrefDataModel(rawData, timestamps);
}
}
}
/**
* Finds update delta files in the same directory as the data file. This finds any file whose name starts
* the same way as the data file (up to first period) but isn't the data file itself. For example, if the
* data file is /foo/data.txt.gz, you might place update files at /foo/data.1.txt.gz, /foo/data.2.txt.gz,
* etc.
*/
private Iterable findUpdateFilesAfter(long minimumLastModified) {
String dataFileName = dataFile.getName();
int period = dataFileName.indexOf('.');
String startName = period < 0 ? dataFileName : dataFileName.substring(0, period);
File parentDir = dataFile.getParentFile();
Map modTimeToUpdateFile = new TreeMap<>();
FileFilter onlyFiles = new FileFilter() {
@Override
public boolean accept(File file) {
return !file.isDirectory();
}
};
for (File updateFile : parentDir.listFiles(onlyFiles)) {
String updateFileName = updateFile.getName();
if (updateFileName.startsWith(startName)
&& !updateFileName.equals(dataFileName)
&& updateFile.lastModified() >= minimumLastModified) {
modTimeToUpdateFile.put(updateFile.lastModified(), updateFile);
}
}
return modTimeToUpdateFile.values();
}
private long readLastUpdateFileModified() {
long mostRecentModification = Long.MIN_VALUE;
for (File updateFile : findUpdateFilesAfter(0L)) {
mostRecentModification = Math.max(mostRecentModification, updateFile.lastModified());
}
return mostRecentModification;
}
public static char determineDelimiter(String line) {
for (char possibleDelimieter : DELIMIETERS) {
if (line.indexOf(possibleDelimieter) >= 0) {
return possibleDelimieter;
}
}
throw new IllegalArgumentException("Did not find a delimiter in first line");
}
protected void processFile(FileLineIterator dataOrUpdateFileIterator,
FastByIDMap data,
FastByIDMap> timestamps,
boolean fromPriorData) {
log.info("Reading file info...");
int count = 0;
while (dataOrUpdateFileIterator.hasNext()) {
String line = dataOrUpdateFileIterator.next();
if (!line.isEmpty()) {
processLine(line, data, timestamps, fromPriorData);
if (++count % 1000000 == 0) {
log.info("Processed {} lines", count);
}
}
}
log.info("Read lines: {}", count);
}
/**
*
* Reads one line from the input file and adds the data to a {@link FastByIDMap} data structure which maps user IDs
* to preferences. This assumes that each line of the input file corresponds to one preference. After
* reading a line and determining which user and item the preference pertains to, the method should look to
* see if the data contains a mapping for the user ID already, and if not, add an empty data structure of preferences
* as appropriate to the data.
*
*
*
* Note that if the line is empty or begins with '#' it will be ignored as a comment.
*
*
* @param line
* line from input data file
* @param data
* all data read so far, as a mapping from user IDs to preferences
* @param fromPriorData an implementation detail -- if true, data will map IDs to
* {@link PreferenceArray} since the framework is attempting to read and update raw
* data that is already in memory. Otherwise it maps to {@link Collection}s of
* {@link Preference}s, since it's reading fresh data. Subclasses must be prepared
* to handle this wrinkle.
*/
protected void processLine(String line,
FastByIDMap data,
FastByIDMap> timestamps,
boolean fromPriorData) {
// Ignore empty lines and comments
if (line.isEmpty() || line.charAt(0) == COMMENT_CHAR) {
return;
}
Iterator tokens = delimiterPattern.split(line).iterator();
String userIDString = tokens.next();
String itemIDString = tokens.next();
String preferenceValueString = tokens.next();
boolean hasTimestamp = tokens.hasNext();
String timestampString = hasTimestamp ? tokens.next() : null;
long userID = readUserIDFromString(userIDString);
long itemID = readItemIDFromString(itemIDString);
if (transpose) {
long tmp = userID;
userID = itemID;
itemID = tmp;
}
// This is kind of gross but need to handle two types of storage
Object maybePrefs = data.get(userID);
if (fromPriorData) {
// Data are PreferenceArray
PreferenceArray prefs = (PreferenceArray) maybePrefs;
if (!hasTimestamp && preferenceValueString.isEmpty()) {
// Then line is of form "userID,itemID,", meaning remove
if (prefs != null) {
boolean exists = false;
int length = prefs.length();
for (int i = 0; i < length; i++) {
if (prefs.getItemID(i) == itemID) {
exists = true;
break;
}
}
if (exists) {
if (length == 1) {
data.remove(userID);
} else {
PreferenceArray newPrefs = new GenericUserPreferenceArray(length - 1);
for (int i = 0, j = 0; i < length; i++, j++) {
if (prefs.getItemID(i) == itemID) {
j--;
} else {
newPrefs.set(j, prefs.get(i));
}
}
((FastByIDMap) data).put(userID, newPrefs);
}
}
}
removeTimestamp(userID, itemID, timestamps);
} else {
float preferenceValue = Float.parseFloat(preferenceValueString);
boolean exists = false;
if (prefs != null) {
for (int i = 0; i < prefs.length(); i++) {
if (prefs.getItemID(i) == itemID) {
exists = true;
prefs.setValue(i, preferenceValue);
break;
}
}
}
if (!exists) {
if (prefs == null) {
prefs = new GenericUserPreferenceArray(1);
} else {
PreferenceArray newPrefs = new GenericUserPreferenceArray(prefs.length() + 1);
for (int i = 0, j = 1; i < prefs.length(); i++, j++) {
newPrefs.set(j, prefs.get(i));
}
prefs = newPrefs;
}
prefs.setUserID(0, userID);
prefs.setItemID(0, itemID);
prefs.setValue(0, preferenceValue);
((FastByIDMap) data).put(userID, prefs);
}
}
addTimestamp(userID, itemID, timestampString, timestamps);
} else {
// Data are Collection
Collection prefs = (Collection) maybePrefs;
if (!hasTimestamp && preferenceValueString.isEmpty()) {
// Then line is of form "userID,itemID,", meaning remove
if (prefs != null) {
// remove pref
Iterator prefsIterator = prefs.iterator();
while (prefsIterator.hasNext()) {
Preference pref = prefsIterator.next();
if (pref.getItemID() == itemID) {
prefsIterator.remove();
break;
}
}
}
removeTimestamp(userID, itemID, timestamps);
} else {
float preferenceValue = Float.parseFloat(preferenceValueString);
boolean exists = false;
if (prefs != null) {
for (Preference pref : prefs) {
if (pref.getItemID() == itemID) {
exists = true;
pref.setValue(preferenceValue);
break;
}
}
}
if (!exists) {
if (prefs == null) {
prefs = new ArrayList<>(2);
((FastByIDMap>) data).put(userID, prefs);
}
prefs.add(new GenericPreference(userID, itemID, preferenceValue));
}
addTimestamp(userID, itemID, timestampString, timestamps);
}
}
}
protected void processFileWithoutID(FileLineIterator dataOrUpdateFileIterator,
FastByIDMap data,
FastByIDMap> timestamps) {
log.info("Reading file info...");
int count = 0;
while (dataOrUpdateFileIterator.hasNext()) {
String line = dataOrUpdateFileIterator.next();
if (!line.isEmpty()) {
processLineWithoutID(line, data, timestamps);
if (++count % 100000 == 0) {
log.info("Processed {} lines", count);
}
}
}
log.info("Read lines: {}", count);
}
protected void processLineWithoutID(String line,
FastByIDMap data,
FastByIDMap> timestamps) {
if (line.isEmpty() || line.charAt(0) == COMMENT_CHAR) {
return;
}
Iterator tokens = delimiterPattern.split(line).iterator();
String userIDString = tokens.next();
String itemIDString = tokens.next();
boolean hasPreference = tokens.hasNext();
String preferenceValueString = hasPreference ? tokens.next() : "";
boolean hasTimestamp = tokens.hasNext();
String timestampString = hasTimestamp ? tokens.next() : null;
long userID = readUserIDFromString(userIDString);
long itemID = readItemIDFromString(itemIDString);
if (transpose) {
long tmp = userID;
userID = itemID;
itemID = tmp;
}
if (hasPreference && !hasTimestamp && preferenceValueString.isEmpty()) {
// Then line is of form "userID,itemID,", meaning remove
FastIDSet itemIDs = data.get(userID);
if (itemIDs != null) {
itemIDs.remove(itemID);
}
removeTimestamp(userID, itemID, timestamps);
} else {
FastIDSet itemIDs = data.get(userID);
if (itemIDs == null) {
itemIDs = new FastIDSet(2);
data.put(userID, itemIDs);
}
itemIDs.add(itemID);
addTimestamp(userID, itemID, timestampString, timestamps);
}
}
private void addTimestamp(long userID,
long itemID,
String timestampString,
FastByIDMap> timestamps) {
if (timestampString != null) {
FastByIDMap itemTimestamps = timestamps.get(userID);
if (itemTimestamps == null) {
itemTimestamps = new FastByIDMap<>();
timestamps.put(userID, itemTimestamps);
}
long timestamp = readTimestampFromString(timestampString);
itemTimestamps.put(itemID, timestamp);
}
}
private static void removeTimestamp(long userID,
long itemID,
FastByIDMap> timestamps) {
FastByIDMap itemTimestamps = timestamps.get(userID);
if (itemTimestamps != null) {
itemTimestamps.remove(itemID);
}
}
/**
* Subclasses may wish to override this if ID values in the file are not numeric. This provides a hook by
* which subclasses can inject an {@link org.apache.mahout.cf.taste.model.IDMigrator} to perform
* translation.
*/
protected long readUserIDFromString(String value) {
return Long.parseLong(value);
}
/**
* Subclasses may wish to override this if ID values in the file are not numeric. This provides a hook by
* which subclasses can inject an {@link org.apache.mahout.cf.taste.model.IDMigrator} to perform
* translation.
*/
protected long readItemIDFromString(String value) {
return Long.parseLong(value);
}
/**
* Subclasses may wish to override this to change how time values in the input file are parsed.
* By default they are expected to be numeric, expressing a time as milliseconds since the epoch.
*/
protected long readTimestampFromString(String value) {
return Long.parseLong(value);
}
@Override
public LongPrimitiveIterator getUserIDs() throws TasteException {
return delegate.getUserIDs();
}
@Override
public PreferenceArray getPreferencesFromUser(long userID) throws TasteException {
return delegate.getPreferencesFromUser(userID);
}
@Override
public FastIDSet getItemIDsFromUser(long userID) throws TasteException {
return delegate.getItemIDsFromUser(userID);
}
@Override
public LongPrimitiveIterator getItemIDs() throws TasteException {
return delegate.getItemIDs();
}
@Override
public PreferenceArray getPreferencesForItem(long itemID) throws TasteException {
return delegate.getPreferencesForItem(itemID);
}
@Override
public Float getPreferenceValue(long userID, long itemID) throws TasteException {
return delegate.getPreferenceValue(userID, itemID);
}
@Override
public Long getPreferenceTime(long userID, long itemID) throws TasteException {
return delegate.getPreferenceTime(userID, itemID);
}
@Override
public int getNumItems() throws TasteException {
return delegate.getNumItems();
}
@Override
public int getNumUsers() throws TasteException {
return delegate.getNumUsers();
}
@Override
public int getNumUsersWithPreferenceFor(long itemID) throws TasteException {
return delegate.getNumUsersWithPreferenceFor(itemID);
}
@Override
public int getNumUsersWithPreferenceFor(long itemID1, long itemID2) throws TasteException {
return delegate.getNumUsersWithPreferenceFor(itemID1, itemID2);
}
/**
* Note that this method only updates the in-memory preference data that this {@link FileDataModel}
* maintains; it does not modify any data on disk. Therefore any updates from this method are only
* temporary, and lost when data is reloaded from a file. This method should also be considered relatively
* slow.
*/
@Override
public void setPreference(long userID, long itemID, float value) throws TasteException {
delegate.setPreference(userID, itemID, value);
}
/** See the warning at {@link #setPreference(long, long, float)}. */
@Override
public void removePreference(long userID, long itemID) throws TasteException {
delegate.removePreference(userID, itemID);
}
@Override
public void refresh(Collection alreadyRefreshed) {
if (dataFile.lastModified() > lastModified + minReloadIntervalMS
|| readLastUpdateFileModified() > lastUpdateFileModified + minReloadIntervalMS) {
log.debug("File has changed; reloading...");
reload();
}
}
@Override
public boolean hasPreferenceValues() {
return delegate.hasPreferenceValues();
}
@Override
public float getMaxPreference() {
return delegate.getMaxPreference();
}
@Override
public float getMinPreference() {
return delegate.getMinPreference();
}
@Override
public String toString() {
return "FileDataModel[dataFile:" + dataFile + ']';
}
}