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*
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* See the License for the specific language governing permissions and
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*/
/*
* The Apache Software License, Version 1.1
*
* Copyright (c) 2001-2003 The Apache Software Foundation. All rights
* reserved.
*
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* modification, are permitted provided that the following conditions
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*
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* any, must include the following acknowlegement:
* "This product includes software developed by the
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*
* This software consists of voluntary contributions made by many
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* to whom the Ant project is very grateful for his
* great code.
*/
package org.apache.tools.bzip2r;
import java.io.InputStream;
import java.io.IOException;
import org.apache.hadoop.fs.FSDataInputStream;
import org.apache.hadoop.mapreduce.InputSplit;
/**
* An input stream that decompresses from the BZip2 format (without the file
* header chars) to be read as any other stream.
*
* @author Keiron Liddle
*/
public class CBZip2InputStream extends InputStream implements BZip2Constants {
private static void cadvise(String reason) throws IOException {
throw new IOException(reason);
}
private static void compressedStreamEOF() throws IOException {
cadvise("compressedStream EOF");
}
private void makeMaps() {
int i;
nInUse = 0;
for (i = 0; i < 256; i++) {
if (inUse[i]) {
seqToUnseq[nInUse] = (char) i;
unseqToSeq[i] = (char) nInUse;
nInUse++;
}
}
}
/*
index of the last char in the block, so
the block size == last + 1.
*/
private int last;
/*
index in zptr[] of original string after sorting.
*/
private int origPtr;
/*
always: in the range 0 .. 9.
The current block size is 100000 * this number.
*/
private int blockSize100k;
private boolean blockRandomised;
// a buffer to keep the read byte
private int bsBuff;
// since bzip is bit-aligned at block boundaries there can be a case wherein
// only few bits out of a read byte are consumed and the remaining bits
// need to be consumed while processing the next block.
// indicate how many bits in bsBuff have not been processed yet
private int bsLive;
private CRC mCrc = new CRC();
private boolean[] inUse = new boolean[256];
private int nInUse;
private char[] seqToUnseq = new char[256];
private char[] unseqToSeq = new char[256];
private char[] selector = new char[MAX_SELECTORS];
private char[] selectorMtf = new char[MAX_SELECTORS];
private int[] tt;
private char[] ll8;
/*
freq table collected to save a pass over the data
during decompression.
*/
private int[] unzftab = new int[256];
private int[][] limit = new int[N_GROUPS][MAX_ALPHA_SIZE];
private int[][] base = new int[N_GROUPS][MAX_ALPHA_SIZE];
private int[][] perm = new int[N_GROUPS][MAX_ALPHA_SIZE];
private int[] minLens = new int[N_GROUPS];
private FSDataInputStream innerBsStream;
long readLimit = Long.MAX_VALUE;
public long getReadLimit() {
return readLimit;
}
public void setReadLimit(long readLimit) {
this.readLimit = readLimit;
}
long readCount;
public long getReadCount() {
return readCount;
}
private boolean streamEnd = false;
private int currentChar = -1;
private static final int START_BLOCK_STATE = 1;
private static final int RAND_PART_A_STATE = 2;
private static final int RAND_PART_B_STATE = 3;
private static final int RAND_PART_C_STATE = 4;
private static final int NO_RAND_PART_A_STATE = 5;
private static final int NO_RAND_PART_B_STATE = 6;
private static final int NO_RAND_PART_C_STATE = 7;
private int currentState = START_BLOCK_STATE;
private int storedBlockCRC, storedCombinedCRC;
private int computedBlockCRC, computedCombinedCRC;
private boolean checkComputedCombinedCRC = true;
int i2, count, chPrev, ch2;
int i, tPos;
int rNToGo = 0;
int rTPos = 0;
int j2;
char z;
// see comment in getPos()
private long retPos = -1;
// the position offset which corresponds to the end of the InputSplit that
// will be processed by this instance
private long endOffsetOfSplit;
private boolean signalToStopReading;
public CBZip2InputStream(FSDataInputStream zStream, int blockSize, long end)
throws IOException {
endOffsetOfSplit = end;
// initialize retPos to the beginning of the current InputSplit
// see comments in getPos() to understand how this is used.
retPos = zStream.getPos();
ll8 = null;
tt = null;
checkComputedCombinedCRC = blockSize == -1;
bsSetStream(zStream);
initialize(blockSize);
initBlock(blockSize != -1);
setupBlock();
}
@Override
public int read() throws IOException {
if (this.innerBsStream == null) {
throw new IOException("stream closed");
}
if (streamEnd) {
return -1;
} else {
// if we just started reading a bzip block which starts at a position
// >= end of current split, then we should set up retpos such that
// after a record is read, future getPos() calls will get a value
// > end of current split - this way we will read only one record out
// of this bzip block - the rest of the records from this bzip block
// should be read by the next map task while processing the next split
if(signalToStopReading) {
retPos = endOffsetOfSplit + 1;
}
int retChar = currentChar;
switch(currentState) {
case START_BLOCK_STATE:
break;
case RAND_PART_A_STATE:
break;
case RAND_PART_B_STATE:
setupRandPartB();
break;
case RAND_PART_C_STATE:
setupRandPartC();
break;
case NO_RAND_PART_A_STATE:
break;
case NO_RAND_PART_B_STATE:
setupNoRandPartB();
break;
case NO_RAND_PART_C_STATE:
setupNoRandPartC();
break;
default:
break;
}
return retChar;
}
}
@Override
public void close() throws IOException {
if (this.innerBsStream == null) {
return;
}
try {
innerBsStream.close();
} finally {
this.innerBsStream = null;
}
}
/**
* getPos is used by the caller to know when the processing of the current
* {@link InputSplit} is complete. In this method, as we read each bzip
* block, we keep returning the beginning of the {@link InputSplit} as the
* return value until we hit a block which starts at a position >= end of
* current split. At that point we should set up retpos such that after a
* record is read, future getPos() calls will get a value > end of current
* split - this way we will read only one record out of that bzip block -
* the rest of the records from that bzip block should be read by the next
* map task while processing the next split
* @return
* @throws IOException
*/
public long getPos() throws IOException{
return retPos;
}
private void initialize(int blockSize) throws IOException {
if (blockSize == -1) {
char magic1, magic2;
char magic3, magic4;
magic1 = bsGetUChar();
magic2 = bsGetUChar();
magic3 = bsGetUChar();
magic4 = bsGetUChar();
if (magic1 != 'B' || magic2 != 'Z' ||
magic3 != 'h' || magic4 < '1' || magic4 > '9') {
streamEnd = true;
return;
}
blockSize = magic4 - '0';
}
setDecompressStructureSizes(blockSize);
computedCombinedCRC = 0;
}
private final static long mask = 0xffffffffffffL;
private final static long eob = 0x314159265359L & mask;
private final static long eos = 0x177245385090L & mask;
private void initBlock(boolean searchForMagic) throws IOException {
if (readCount >= readLimit) {
streamEnd = true;
return;
}
// position before beginning of bzip block header
long pos = innerBsStream.getPos();
if (!searchForMagic) {
char magic1, magic2, magic3, magic4;
char magic5, magic6;
magic1 = bsGetUChar();
magic2 = bsGetUChar();
magic3 = bsGetUChar();
magic4 = bsGetUChar();
magic5 = bsGetUChar();
magic6 = bsGetUChar();
if (magic1 == 0x17 && magic2 == 0x72 && magic3 == 0x45
&& magic4 == 0x38 && magic5 == 0x50 && magic6 == 0x90) {
complete();
return;
}
if (magic1 != 0x31 || magic2 != 0x41 || magic3 != 0x59
|| magic4 != 0x26 || magic5 != 0x53 || magic6 != 0x59) {
badBlockHeader();
streamEnd = true;
return;
}
} else {
long magic = 0;
for(int i = 0; i < 6; i++) {
magic <<= 8;
magic |= bsGetUChar();
}
while(magic != eos && magic != eob) {
magic <<= 1;
magic &= mask;
magic |= bsR(1);
// if we just found the block header, the beginning of the bzip
// header would be 6 bytes before the current stream position
// when we eventually break from this while(), if it is because
// we found a block header then pos will have the correct start
// of header position
pos = innerBsStream.getPos() - 6;
}
if (magic == eos) {
complete();
return;
}
}
// if the previous block finished a few bits into the previous byte,
// then we will first be reading the remaining bits from the previous
// byte - so logically pos needs to be one behind
if(bsLive > 0) {
pos--;
}
if(pos >= endOffsetOfSplit) {
// we have reached a block which begins exactly at the next InputSplit
// or >1 byte into the next InputSplit - lets record this fact
signalToStopReading = true;
}
storedBlockCRC = bsGetInt32();
if (bsR(1) == 1) {
blockRandomised = true;
} else {
blockRandomised = false;
}
// currBlockNo++;
getAndMoveToFrontDecode();
mCrc.initialiseCRC();
currentState = START_BLOCK_STATE;
}
private void endBlock() throws IOException {
computedBlockCRC = mCrc.getFinalCRC();
/* A bad CRC is considered a fatal error. */
if (storedBlockCRC != computedBlockCRC) {
crcError();
}
computedCombinedCRC = (computedCombinedCRC << 1)
| (computedCombinedCRC >>> 31);
computedCombinedCRC ^= computedBlockCRC;
}
private void complete() throws IOException {
storedCombinedCRC = bsGetInt32();
if (checkComputedCombinedCRC &&
storedCombinedCRC != computedCombinedCRC) {
crcError();
}
if (innerBsStream.getPos() < endOffsetOfSplit) {
throw new IOException("Encountered additional bytes in the filesplit past the crc block. "
+ "Loading of concatenated bz2 files is not supported");
}
streamEnd = true;
}
private static void blockOverrun() throws IOException {
cadvise("block overrun");
}
private static void badBlockHeader() throws IOException {
cadvise("bad block header");
}
private static void crcError() throws IOException {
cadvise("CRC error");
}
private void bsSetStream(FSDataInputStream f) {
innerBsStream = f;
bsLive = 0;
bsBuff = 0;
}
final private int readBs() throws IOException {
readCount++;
return innerBsStream.read();
}
private int bsR(int n) throws IOException {
int v;
while (bsLive < n) {
int zzi;
zzi = readBs();
if (zzi == -1) {
compressedStreamEOF();
}
bsBuff = (bsBuff << 8) | (zzi & 0xff);
bsLive += 8;
}
v = (bsBuff >> (bsLive - n)) & ((1 << n) - 1);
bsLive -= n;
return v;
}
private char bsGetUChar() throws IOException {
return (char) bsR(8);
}
private int bsGetint() throws IOException {
int u = 0;
u = (u << 8) | bsR(8);
u = (u << 8) | bsR(8);
u = (u << 8) | bsR(8);
u = (u << 8) | bsR(8);
return u;
}
private int bsGetIntVS(int numBits) throws IOException {
return bsR(numBits);
}
private int bsGetInt32() throws IOException {
return bsGetint();
}
private void hbCreateDecodeTables(int[] limit, int[] base,
int[] perm, char[] length,
int minLen, int maxLen, int alphaSize) {
int pp, i, j, vec;
pp = 0;
for (i = minLen; i <= maxLen; i++) {
for (j = 0; j < alphaSize; j++) {
if (length[j] == i) {
perm[pp] = j;
pp++;
}
}
}
for (i = 0; i < MAX_CODE_LEN; i++) {
base[i] = 0;
}
for (i = 0; i < alphaSize; i++) {
base[length[i] + 1]++;
}
for (i = 1; i < MAX_CODE_LEN; i++) {
base[i] += base[i - 1];
}
for (i = 0; i < MAX_CODE_LEN; i++) {
limit[i] = 0;
}
vec = 0;
for (i = minLen; i <= maxLen; i++) {
vec += (base[i + 1] - base[i]);
limit[i] = vec - 1;
vec <<= 1;
}
for (i = minLen + 1; i <= maxLen; i++) {
base[i] = ((limit[i - 1] + 1) << 1) - base[i];
}
}
private void recvDecodingTables() throws IOException {
char len[][] = new char[N_GROUPS][MAX_ALPHA_SIZE];
int i, j, t, nGroups, nSelectors, alphaSize;
int minLen, maxLen;
boolean[] inUse16 = new boolean[16];
/* Receive the mapping table */
for (i = 0; i < 16; i++) {
if (bsR(1) == 1) {
inUse16[i] = true;
} else {
inUse16[i] = false;
}
}
for (i = 0; i < 256; i++) {
inUse[i] = false;
}
for (i = 0; i < 16; i++) {
if (inUse16[i]) {
for (j = 0; j < 16; j++) {
if (bsR(1) == 1) {
inUse[i * 16 + j] = true;
}
}
}
}
makeMaps();
alphaSize = nInUse + 2;
/* Now the selectors */
nGroups = bsR(3);
nSelectors = bsR(15);
for (i = 0; i < nSelectors; i++) {
j = 0;
while (bsR(1) == 1) {
j++;
}
selectorMtf[i] = (char) j;
}
/* Undo the MTF values for the selectors. */
{
char[] pos = new char[N_GROUPS];
char tmp, v;
for (v = 0; v < nGroups; v++) {
pos[v] = v;
}
for (i = 0; i < nSelectors; i++) {
v = selectorMtf[i];
tmp = pos[v];
while (v > 0) {
pos[v] = pos[v - 1];
v--;
}
pos[0] = tmp;
selector[i] = tmp;
}
}
/* Now the coding tables */
for (t = 0; t < nGroups; t++) {
int curr = bsR(5);
for (i = 0; i < alphaSize; i++) {
while (bsR(1) == 1) {
if (bsR(1) == 0) {
curr++;
} else {
curr--;
}
}
len[t][i] = (char) curr;
}
}
/* Create the Huffman decoding tables */
for (t = 0; t < nGroups; t++) {
minLen = 32;
maxLen = 0;
for (i = 0; i < alphaSize; i++) {
if (len[t][i] > maxLen) {
maxLen = len[t][i];
}
if (len[t][i] < minLen) {
minLen = len[t][i];
}
}
hbCreateDecodeTables(limit[t], base[t], perm[t], len[t], minLen,
maxLen, alphaSize);
minLens[t] = minLen;
}
}
private void getAndMoveToFrontDecode() throws IOException {
char[] yy = new char[256];
int i, j, nextSym, limitLast;
int EOB, groupNo, groupPos;
limitLast = baseBlockSize * blockSize100k;
origPtr = bsGetIntVS(24);
recvDecodingTables();
EOB = nInUse + 1;
groupNo = -1;
groupPos = 0;
/*
Setting up the unzftab entries here is not strictly
necessary, but it does save having to do it later
in a separate pass, and so saves a block's worth of
cache misses.
*/
for (i = 0; i <= 255; i++) {
unzftab[i] = 0;
}
for (i = 0; i <= 255; i++) {
yy[i] = (char) i;
}
last = -1;
{
int zt, zn, zvec, zj;
if (groupPos == 0) {
groupNo++;
groupPos = G_SIZE;
}
groupPos--;
zt = selector[groupNo];
zn = minLens[zt];
zvec = bsR(zn);
while (zvec > limit[zt][zn]) {
zn++;
{
{
while (bsLive < 1) {
int zzi = 0;
try {
zzi = readBs();
} catch (IOException e) {
compressedStreamEOF();
}
if (zzi == -1) {
compressedStreamEOF();
}
bsBuff = (bsBuff << 8) | (zzi & 0xff);
bsLive += 8;
}
}
zj = (bsBuff >> (bsLive - 1)) & 1;
bsLive--;
}
zvec = (zvec << 1) | zj;
}
nextSym = perm[zt][zvec - base[zt][zn]];
}
while (true) {
if (nextSym == EOB) {
break;
}
if (nextSym == RUNA || nextSym == RUNB) {
char ch;
int s = -1;
int N = 1;
do {
if (nextSym == RUNA) {
s = s + (0 + 1) * N;
} else if (nextSym == RUNB) {
s = s + (1 + 1) * N;
}
N = N * 2;
{
int zt, zn, zvec, zj;
if (groupPos == 0) {
groupNo++;
groupPos = G_SIZE;
}
groupPos--;
zt = selector[groupNo];
zn = minLens[zt];
zvec = bsR(zn);
while (zvec > limit[zt][zn]) {
zn++;
{
{
while (bsLive < 1) {
int zzi = 0;
try {
zzi = readBs();
} catch (IOException e) {
compressedStreamEOF();
}
if (zzi == -1) {
compressedStreamEOF();
}
bsBuff = (bsBuff << 8) | (zzi & 0xff);
bsLive += 8;
}
}
zj = (bsBuff >> (bsLive - 1)) & 1;
bsLive--;
}
zvec = (zvec << 1) | zj;
}
nextSym = perm[zt][zvec - base[zt][zn]];
}
} while (nextSym == RUNA || nextSym == RUNB);
s++;
ch = seqToUnseq[yy[0]];
unzftab[ch] += s;
while (s > 0) {
last++;
ll8[last] = ch;
s--;
}
if (last >= limitLast) {
blockOverrun();
}
continue;
} else {
char tmp;
last++;
if (last >= limitLast) {
blockOverrun();
}
tmp = yy[nextSym - 1];
unzftab[seqToUnseq[tmp]]++;
ll8[last] = seqToUnseq[tmp];
/*
This loop is hammered during decompression,
hence the unrolling.
for (j = nextSym-1; j > 0; j--) yy[j] = yy[j-1];
*/
j = nextSym - 1;
for (; j > 3; j -= 4) {
yy[j] = yy[j - 1];
yy[j - 1] = yy[j - 2];
yy[j - 2] = yy[j - 3];
yy[j - 3] = yy[j - 4];
}
for (; j > 0; j--) {
yy[j] = yy[j - 1];
}
yy[0] = tmp;
{
int zt, zn, zvec, zj;
if (groupPos == 0) {
groupNo++;
groupPos = G_SIZE;
}
groupPos--;
zt = selector[groupNo];
zn = minLens[zt];
zvec = bsR(zn);
while (zvec > limit[zt][zn]) {
zn++;
{
{
while (bsLive < 1) {
int zzi;
char thech = 0;
try {
thech = (char) readBs();
} catch (IOException e) {
compressedStreamEOF();
}
zzi = thech;
bsBuff = (bsBuff << 8) | (zzi & 0xff);
bsLive += 8;
}
}
zj = (bsBuff >> (bsLive - 1)) & 1;
bsLive--;
}
zvec = (zvec << 1) | zj;
}
nextSym = perm[zt][zvec - base[zt][zn]];
}
continue;
}
}
}
private void setupBlock() throws IOException {
int[] cftab = new int[257];
char ch;
cftab[0] = 0;
for (i = 1; i <= 256; i++) {
cftab[i] = unzftab[i - 1];
}
for (i = 1; i <= 256; i++) {
cftab[i] += cftab[i - 1];
}
for (i = 0; i <= last; i++) {
ch = ll8[i];
tt[cftab[ch]] = i;
cftab[ch]++;
}
cftab = null;
tPos = tt[origPtr];
count = 0;
i2 = 0;
ch2 = 256; /* not a char and not EOF */
if (blockRandomised) {
rNToGo = 0;
rTPos = 0;
setupRandPartA();
} else {
setupNoRandPartA();
}
}
private void setupRandPartA() throws IOException {
if (i2 <= last) {
chPrev = ch2;
ch2 = ll8[tPos];
tPos = tt[tPos];
if (rNToGo == 0) {
rNToGo = rNums[rTPos];
rTPos++;
if (rTPos == 512) {
rTPos = 0;
}
}
rNToGo--;
ch2 ^= ((rNToGo == 1) ? 1 : 0);
i2++;
currentChar = ch2;
currentState = RAND_PART_B_STATE;
mCrc.updateCRC(ch2);
} else {
endBlock();
initBlock(false);
setupBlock();
}
}
private void setupNoRandPartA() throws IOException {
if (i2 <= last) {
chPrev = ch2;
ch2 = ll8[tPos];
tPos = tt[tPos];
i2++;
currentChar = ch2;
currentState = NO_RAND_PART_B_STATE;
mCrc.updateCRC(ch2);
} else {
endBlock();
initBlock(false);
setupBlock();
}
}
private void setupRandPartB() throws IOException {
if (ch2 != chPrev) {
currentState = RAND_PART_A_STATE;
count = 1;
setupRandPartA();
} else {
count++;
if (count >= 4) {
z = ll8[tPos];
tPos = tt[tPos];
if (rNToGo == 0) {
rNToGo = rNums[rTPos];
rTPos++;
if (rTPos == 512) {
rTPos = 0;
}
}
rNToGo--;
z ^= ((rNToGo == 1) ? 1 : 0);
j2 = 0;
currentState = RAND_PART_C_STATE;
setupRandPartC();
} else {
currentState = RAND_PART_A_STATE;
setupRandPartA();
}
}
}
private void setupRandPartC() throws IOException {
if (j2 < (int) z) {
currentChar = ch2;
mCrc.updateCRC(ch2);
j2++;
} else {
currentState = RAND_PART_A_STATE;
i2++;
count = 0;
setupRandPartA();
}
}
private void setupNoRandPartB() throws IOException {
if (ch2 != chPrev) {
currentState = NO_RAND_PART_A_STATE;
count = 1;
setupNoRandPartA();
} else {
count++;
if (count >= 4) {
z = ll8[tPos];
tPos = tt[tPos];
currentState = NO_RAND_PART_C_STATE;
j2 = 0;
setupNoRandPartC();
} else {
currentState = NO_RAND_PART_A_STATE;
setupNoRandPartA();
}
}
}
private void setupNoRandPartC() throws IOException {
if (j2 < (int) z) {
currentChar = ch2;
mCrc.updateCRC(ch2);
j2++;
} else {
currentState = NO_RAND_PART_A_STATE;
i2++;
count = 0;
setupNoRandPartA();
}
}
private void setDecompressStructureSizes(int newSize100k) {
if (!(0 <= newSize100k && newSize100k <= 9 && 0 <= blockSize100k
&& blockSize100k <= 9)) {
// throw new IOException("Invalid block size");
}
blockSize100k = newSize100k;
if (newSize100k == 0) {
return;
}
int n = baseBlockSize * newSize100k;
ll8 = new char[n];
tt = new int[n];
}
}