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Apache XML Security for Java supports XML-Signature Syntax and Processing, W3C Recommendation 12 February 2002, and XML Encryption Syntax and Processing, W3C Recommendation 10 December 2002. As of version 1.4, the library supports the standard Java API JSR-105: XML Digital Signature APIs.
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/**
 * Licensed to the Apache Software Foundation (ASF) under one
 * or more contributor license agreements. See the NOTICE file
 * distributed with this work for additional information
 * regarding copyright ownership. The ASF licenses this file
 * to you under the Apache License, Version 2.0 (the
 * "License"); you may not use this file except in compliance
 * with the License. You may obtain a copy of the License at
 *
 * http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing,
 * software distributed under the License is distributed on an
 * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
 * KIND, either express or implied. See the License for the
 * specific language governing permissions and limitations
 * under the License.
 */
/*
 * Copyright 2005 Sun Microsystems, Inc. All rights reserved.
 */
/*
 * $Id: DOMExcC14NMethod.java 1537956 2013-11-01 15:25:17Z coheigea $
 */
package org.apache.jcp.xml.dsig.internal.dom;

import javax.xml.crypto.*;
import javax.xml.crypto.dsig.*;
import javax.xml.crypto.dsig.spec.C14NMethodParameterSpec;
import javax.xml.crypto.dsig.spec.ExcC14NParameterSpec;
import javax.xml.crypto.dsig.spec.TransformParameterSpec;

import java.security.InvalidAlgorithmParameterException;
import java.security.spec.AlgorithmParameterSpec;
import java.util.*;

import org.w3c.dom.Element;
import org.apache.xml.security.c14n.Canonicalizer;
import org.apache.xml.security.c14n.InvalidCanonicalizerException;

/**
 * DOM-based implementation of CanonicalizationMethod for Exclusive
 * Canonical XML algorithm (with or without comments).
 * Uses Apache XML-Sec Canonicalizer.
 *
 * @author Sean Mullan
 */
public final class DOMExcC14NMethod extends ApacheCanonicalizer {

    public void init(TransformParameterSpec params)
        throws InvalidAlgorithmParameterException
    {
        if (params != null) {
            if (!(params instanceof ExcC14NParameterSpec)) {
                throw new InvalidAlgorithmParameterException
                    ("params must be of type ExcC14NParameterSpec");
            }
            this.params = (C14NMethodParameterSpec)params;
        }
    }

    public void init(XMLStructure parent, XMLCryptoContext context)
        throws InvalidAlgorithmParameterException
    {
        super.init(parent, context);
        Element paramsElem = DOMUtils.getFirstChildElement(transformElem);
        if (paramsElem == null) {
            this.params = null;
            this.inclusiveNamespaces = null;
            return;
        }
        unmarshalParams(paramsElem);
    }

    private void unmarshalParams(Element paramsElem) {
        String prefixListAttr = paramsElem.getAttributeNS(null, "PrefixList");
        this.inclusiveNamespaces = prefixListAttr;
        int begin = 0;
        int end = prefixListAttr.indexOf(' ');
        List prefixList = new ArrayList();
        while (end != -1) {
            prefixList.add(prefixListAttr.substring(begin, end));
            begin = end + 1;
            end = prefixListAttr.indexOf(' ', begin);
        }
        if (begin <= prefixListAttr.length()) {
            prefixList.add(prefixListAttr.substring(begin));
        }
        this.params = new ExcC14NParameterSpec(prefixList);
    }

    public void marshalParams(XMLStructure parent, XMLCryptoContext context)
        throws MarshalException
    {
        super.marshalParams(parent, context);
        AlgorithmParameterSpec spec = getParameterSpec();
        if (spec == null) {
            return;
        }

        String prefix = DOMUtils.getNSPrefix(context,
                                             CanonicalizationMethod.EXCLUSIVE);
        Element eElem = DOMUtils.createElement(ownerDoc,
                                               "InclusiveNamespaces", 
                                               CanonicalizationMethod.EXCLUSIVE,
                                               prefix);
        if (prefix == null || prefix.length() == 0) {
            eElem.setAttributeNS("http://www.w3.org/2000/xmlns/", "xmlns",
                                 CanonicalizationMethod.EXCLUSIVE);
        } else {
            eElem.setAttributeNS("http://www.w3.org/2000/xmlns/", 
                                   "xmlns:" + prefix,
                                   CanonicalizationMethod.EXCLUSIVE);
        }

        ExcC14NParameterSpec params = (ExcC14NParameterSpec)spec;
        StringBuffer prefixListAttr = new StringBuffer("");
        @SuppressWarnings("unchecked")
        List prefixList = params.getPrefixList();
        for (int i = 0, size = prefixList.size(); i < size; i++) {
            prefixListAttr.append(prefixList.get(i));
            if (i < size - 1) {
                prefixListAttr.append(" ");
            }
        }
        DOMUtils.setAttribute(eElem, "PrefixList", prefixListAttr.toString());
        this.inclusiveNamespaces = prefixListAttr.toString();
        transformElem.appendChild(eElem);
    }

    public String getParamsNSURI() {
        return CanonicalizationMethod.EXCLUSIVE;
    }

    public Data transform(Data data, XMLCryptoContext xc)
        throws TransformException
    {
        // ignore comments if dereferencing same-document URI that require
        // you to omit comments, even if the Transform says otherwise -
        // this is to be compliant with section 4.3.3.3 of W3C Rec.
        if (data instanceof DOMSubTreeData) {
            DOMSubTreeData subTree = (DOMSubTreeData)data;
            if (subTree.excludeComments()) {
                try {
                    apacheCanonicalizer = Canonicalizer.getInstance
                        (CanonicalizationMethod.EXCLUSIVE);
                    boolean secVal = Utils.secureValidation(xc);
                    apacheCanonicalizer.setSecureValidation(secVal);
                } catch (InvalidCanonicalizerException ice) {
                    throw new TransformException
                        ("Couldn't find Canonicalizer for: " +
                         CanonicalizationMethod.EXCLUSIVE + ": " +
                         ice.getMessage(), ice);
                }
            }
        }

        return canonicalize(data, xc);
    }
}