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    • org.biojava.bio.alignment.PAM160 Maven / Gradle / Ivy

    There is a newer version: 1.9.7
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    #
# This matrix was produced by "pam" Version 1.0.6 [28-Jul-93]
#
# PAM 160 substitution matrix, scale = ln(2)/2 = 0.346574
#
# Expected score = -1.14, Entropy = 0.694 bits
#
# Lowest score = -7, Highest score = 12
#
   A  R  N  D  C  Q  E  G  H  I  L  K  M  F  P  S  T  W  Y  V  B  Z  X  *
A  2 -2  0  0 -2 -1  0  1 -2 -1 -2 -2 -1 -3  1  1  1 -5 -3  0  0  0  0 -7
R -2  6 -1 -2 -3  1 -2 -3  1 -2 -3  3 -1 -4 -1 -1 -1  1 -4 -3 -1  0 -1 -7
N  0 -1  3  2 -4  0  1  0  2 -2 -3  1 -2 -3 -1  1  0 -4 -2 -2  2  1  0 -7
D  0 -2  2  4 -5  1  3  0  0 -3 -4  0 -3 -6 -2  0 -1 -6 -4 -3  3  2 -1 -7
C -2 -3 -4 -5  9 -5 -5 -3 -3 -2 -6 -5 -5 -5 -3  0 -2 -7  0 -2 -4 -5 -3 -7
Q -1  1  0  1 -5  5  2 -2  2 -2 -2  0 -1 -5  0 -1 -1 -5 -4 -2  1  3 -1 -7
E  0 -2  1  3 -5  2  4  0  0 -2 -3 -1 -2 -5 -1  0 -1 -7 -4 -2  2  3 -1 -7
G  1 -3  0  0 -3 -2  0  4 -3 -3 -4 -2 -3 -4 -1  1 -1 -7 -5 -2  0 -1 -1 -7
H -2  1  2  0 -3  2  0 -3  6 -3 -2 -1 -3 -2 -1 -1 -2 -3  0 -2  1  1 -1 -7
I -1 -2 -2 -3 -2 -2 -2 -3 -3  5  2 -2  2  0 -2 -2  0 -5 -2  3 -2 -2 -1 -7
L -2 -3 -3 -4 -6 -2 -3 -4 -2  2  5 -3  3  1 -3 -3 -2 -2 -2  1 -4 -3 -2 -7
K -2  3  1  0 -5  0 -1 -2 -1 -2 -3  4  0 -5 -2 -1  0 -4 -4 -3  0  0 -1 -7
M -1 -1 -2 -3 -5 -1 -2 -3 -3  2  3  0  7  0 -2 -2 -1 -4 -3  1 -3 -2 -1 -7
F -3 -4 -3 -6 -5 -5 -5 -4 -2  0  1 -5  0  7 -4 -3 -3 -1  5 -2 -4 -5 -3 -7
P  1 -1 -1 -2 -3  0 -1 -1 -1 -2 -3 -2 -2 -4  5  1  0 -5 -5 -2 -1 -1 -1 -7
S  1 -1  1  0  0 -1  0  1 -1 -2 -3 -1 -2 -3  1  2  1 -2 -3 -1  0 -1  0 -7
T  1 -1  0 -1 -2 -1 -1 -1 -2  0 -2  0 -1 -3  0  1  3 -5 -3  0  0 -1  0 -7
W -5  1 -4 -6 -7 -5 -7 -7 -3 -5 -2 -4 -4 -1 -5 -2 -5 12 -1 -6 -5 -6 -4 -7
Y -3 -4 -2 -4  0 -4 -4 -5  0 -2 -2 -4 -3  5 -5 -3 -3 -1  8 -3 -3 -4 -3 -7
V  0 -3 -2 -3 -2 -2 -2 -2 -2  3  1 -3  1 -2 -2 -1  0 -6 -3  4 -2 -2 -1 -7
B  0 -1  2  3 -4  1  2  0  1 -2 -4  0 -3 -4 -1  0  0 -5 -3 -2  3  2 -1 -7
Z  0  0  1  2 -5  3  3 -1  1 -2 -3  0 -2 -5 -1 -1 -1 -6 -4 -2  2  3 -1 -7
X  0 -1  0 -1 -3 -1 -1 -1 -1 -1 -2 -1 -1 -3 -1  0  0 -4 -3 -1 -1 -1 -1 -7
* -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7  1




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