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    • org.biojava.bio.alignment.PAM290 Maven / Gradle / Ivy

    There is a newer version: 1.9.7
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    #
# This matrix was produced by "pam" Version 1.0.6 [28-Jul-93]
#
# PAM 290 substitution matrix, scale = ln(2)/4 = 0.173287
#
# Expected score = -0.877, Entropy = 0.271 bits
#
# Lowest score = -9, Highest score = 22
#
   A  R  N  D  C  Q  E  G  H  I  L  K  M  F  P  S  T  W  Y  V  B  Z  X  *
A  2 -2  0  0 -2  0  0  2 -1 -1 -2 -1 -1 -4  1  1  1 -7 -4  0  0  0  0 -9
R -2  7  0 -1 -4  2 -1 -3  2 -2 -3  4  0 -5  0  0 -1  3 -5 -3  0  0 -1 -9
N  0  0  2  2 -4  1  2  1  2 -2 -3  1 -2 -4  0  1  1 -5 -3 -2  2  1  0 -9
D  0 -1  2  4 -6  2  4  1  1 -3 -4  0 -3 -6 -1  0  0 -8 -5 -2  3  3 -1 -9
C -2 -4 -4 -6 15 -6 -6 -4 -4 -3 -7 -6 -6 -5 -3  0 -2 -9  1 -2 -5 -6 -3 -9
Q  0  2  1  2 -6  4  3 -1  3 -2 -2  1 -1 -5  0  0 -1 -5 -5 -2  2  3  0 -9
E  0 -1  2  4 -6  3  4  0  1 -2 -4  0 -2 -6  0  0  0 -8 -5 -2  3  4 -1 -9
G  2 -3  1  1 -4 -1  0  5 -2 -3 -4 -2 -3 -6  0  1  0 -8 -6 -1  1  0 -1 -9
H -1  2  2  1 -4  3  1 -2  7 -3 -2  0 -2 -2  0 -1 -1 -3  0 -2  1  2 -1 -9
I -1 -2 -2 -3 -3 -2 -2 -3 -3  5  3 -2  3  1 -2 -1  0 -6 -1  4 -2 -2 -1 -9
L -2 -3 -3 -4 -7 -2 -4 -4 -2  3  7 -3  5  3 -3 -3 -2 -2 -1  2 -4 -3 -1 -9
K -1  4  1  0 -6  1  0 -2  0 -2 -3  5  0 -6 -1  0  0 -4 -5 -3  1  1 -1 -9
M -1  0 -2 -3 -6 -1 -2 -3 -2  3  5  0  7  0 -2 -2 -1 -5 -2  2 -2 -2 -1 -9
F -4 -5 -4 -6 -5 -5 -6 -6 -2  1  3 -6  0 11 -5 -4 -3  1  9 -1 -5 -6 -3 -9
P  1  0  0 -1 -3  0  0  0  0 -2 -3 -1 -2 -5  7  1  1 -6 -6 -1 -1  0 -1 -9
S  1  0  1  0  0  0  0  1 -1 -1 -3  0 -2 -4  1  2  1 -3 -3 -1  1  0  0 -9
T  1 -1  1  0 -2 -1  0  0 -1  0 -2  0 -1 -3  1  1  3 -6 -3  0  0  0  0 -9
W -7  3 -5 -8 -9 -5 -8 -8 -3 -6 -2 -4 -5  1 -6 -3 -6 22  0 -7 -6 -7 -5 -9
Y -4 -5 -3 -5  1 -5 -5 -6  0 -1 -1 -5 -2  9 -6 -3 -3  0 13 -3 -4 -5 -2 -9
V  0 -3 -2 -2 -2 -2 -2 -1 -2  4  2 -3  2 -1 -1 -1  0 -7 -3  5 -2 -2 -1 -9
B  0  0  2  3 -5  2  3  1  1 -2 -4  1 -2 -5 -1  1  0 -6 -4 -2  3  2  0 -9
Z  0  0  1  3 -6  3  4  0  2 -2 -3  1 -2 -6  0  0  0 -7 -5 -2  2  4 -1 -9
X  0 -1  0 -1 -3  0 -1 -1 -1 -1 -1 -1 -1 -3 -1  0  0 -5 -2 -1  0 -1 -1 -9
* -9 -9 -9 -9 -9 -9 -9 -9 -9 -9 -9 -9 -9 -9 -9 -9 -9 -9 -9 -9 -9 -9 -9  1




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