• Home
• org.biojava
• alignment
• 1.9.2
• source code
• BLOSUMN.50

×

Project download

Many resources are needed to download a project. Please understand that we have to compensate our server costs. Thank you in advance.
Project price only 1 $

You can buy this project and download/modify it how often you want.

org.biojava.bio.alignment.BLOSUMN.50 Maven / Gradle / Ivy

#  Matrix made by matblas from blosumn.iij
#  * column uses minimum score
#  BLOSUM Clustered Scoring Matrix in 1/2 Bit Units
#  Blocks Database = /data/blocks_5.0/blocks.dat
#  Cluster Percentage: >= -2
#  Entropy =   1.5172, Expected =  -1.1484
   A  R  N  D  C  Q  E  G  H  I  L  K  M  F  P  S  T  W  Y  V  B  Z  X  *
A  6 -2 -2 -3 -2 -1 -2 -1 -3 -3 -3 -2 -2 -4 -1  1 -1 -4 -4 -1 -3 -2 -1 -7 
R -2  7 -1 -3 -6  0 -2 -4 -1 -5 -4  2 -3 -4 -3 -2 -2 -5 -4 -4 -2 -1 -2 -7 
N -2 -1  7  1 -4 -1 -1 -2  0 -5 -5 -1 -4 -5 -4  0 -1 -6 -4 -4  4 -1 -2 -7 
D -3 -3  1  7 -6 -2  1 -3 -2 -6 -6 -2 -5 -5 -3 -2 -2 -7 -5 -5  4  0 -3 -7 
C -2 -6 -4 -6  9 -5 -7 -5 -6 -2 -3 -5 -3 -3 -5 -2 -2 -5 -4 -2 -5 -6 -4 -7 
Q -1  0 -1 -2 -5  7  1 -4  0 -4 -3  1 -1 -4 -2 -1 -2 -4 -3 -4 -1  4 -2 -7 
E -2 -2 -1  1 -7  1  6 -4 -1 -5 -5  0 -4 -5 -3 -1 -2 -5 -4 -4  0  5 -2 -7 
G -1 -4 -2 -3 -5 -4 -4  6 -4 -6 -6 -3 -5 -5 -4 -1 -3 -5 -6 -5 -2 -4 -3 -7 
H -3 -1  0 -2 -6  0 -1 -4  9 -5 -4 -2 -3 -3 -4 -2 -3 -4  1 -5 -1 -1 -3 -7 
I -3 -5 -5 -6 -2 -4 -5 -6 -5  6  1 -4  1 -1 -5 -4 -2 -4 -3  2 -5 -5 -2 -7 
L -3 -4 -5 -6 -3 -3 -5 -6 -4  1  5 -4  2  0 -5 -4 -3 -4 -3  0 -5 -4 -2 -7 
K -2  2 -1 -2 -5  1  0 -3 -2 -4 -4  6 -2 -4 -2 -1 -2 -6 -4 -4 -1  0 -2 -7 
M -2 -3 -4 -5 -3 -1 -4 -5 -3  1  2 -2  8 -1 -4 -3 -2 -2 -3  0 -5 -3 -2 -7 
F -4 -4 -5 -5 -3 -4 -5 -5 -3 -1  0 -4 -1  7 -5 -4 -3  0  3 -2 -5 -5 -3 -7 
P -1 -3 -4 -3 -5 -2 -3 -4 -4 -5 -5 -2 -4 -5  8 -2 -3 -5 -5 -4 -4 -3 -3 -7 
S  1 -2  0 -2 -2 -1 -1 -1 -2 -4 -4 -1 -3 -4 -2  6  1 -4 -3 -3 -1 -1 -1 -7 
T -1 -2 -1 -2 -2 -2 -2 -3 -3 -2 -3 -2 -2 -3 -3  1  6 -5 -3 -1 -2 -2 -1 -7 
W -4 -5 -6 -7 -5 -4 -5 -5 -4 -4 -4 -6 -2  0 -5 -4 -5 11  1 -3 -6 -4 -4 -7 
Y -4 -4 -4 -5 -4 -3 -4 -6  1 -3 -3 -4 -3  3 -5 -3 -3  1  8 -3 -4 -4 -3 -7 
V -1 -4 -4 -5 -2 -4 -4 -5 -5  2  0 -4  0 -2 -4 -3 -1 -3 -3  5 -5 -4 -2 -7 
B -3 -2  4  4 -5 -1  0 -2 -1 -5 -5 -1 -5 -5 -4 -1 -2 -6 -4 -5  4  1 -2 -7 
Z -2 -1 -1  0 -6  4  5 -4 -1 -5 -4  0 -3 -5 -3 -1 -2 -4 -4 -4  1  4 -2 -7 
X -1 -2 -2 -3 -4 -2 -2 -3 -3 -2 -2 -2 -2 -3 -3 -1 -1 -4 -3 -2 -2 -2 -2 -7 
* -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7  1