All Downloads are FREE. Search and download functionalities are using the official Maven repository.
  • Log In
  • Register

    • org.biojava.bio.alignment.PAM140 Maven / Gradle / Ivy

    There is a newer version: 1.9.7
    Show newest version
    #
# This matrix was produced by "pam" Version 1.0.6 [28-Jul-93]
#
# PAM 140 substitution matrix, scale = ln(2)/2 = 0.346574
#
# Expected score = -1.35, Entropy = 0.820 bits
#
# Lowest score = -8, Highest score = 12
#
   A  R  N  D  C  Q  E  G  H  I  L  K  M  F  P  S  T  W  Y  V  B  Z  X  *
A  3 -2  0  0 -2 -1  0  1 -2 -1 -2 -2 -2 -4  1  1  1 -6 -4  0  0  0 -1 -8
R -2  6 -1 -3 -4  1 -2 -4  1 -2 -4  3 -1 -5 -1 -1 -2  1 -5 -3 -2 -1 -1 -8
N  0 -1  3  2 -4  0  1  0  2 -2 -3  1 -2 -4 -1  1  0 -4 -2 -2  3  1 -1 -8
D  0 -3  2  4 -6  1  3  0  0 -3 -5 -1 -4 -6 -2  0 -1 -7 -5 -3  4  3 -1 -8
C -2 -4 -4 -6  9 -6 -6 -4 -4 -3 -7 -6 -6 -5 -3  0 -3 -8 -1 -2 -5 -6 -4 -8
Q -1  1  0  1 -6  5  2 -2  3 -3 -2  0 -1 -5  0 -1 -2 -5 -5 -2  1  4 -1 -8
E  0 -2  1  3 -6  2  4 -1  0 -2 -4 -1 -3 -6 -1 -1 -1 -8 -4 -2  2  4 -1 -8
G  1 -4  0  0 -4 -2 -1  5 -3 -4 -5 -3 -3 -5 -1  1 -1 -7 -6 -2  0 -1 -1 -8
H -2  1  2  0 -4  3  0 -3  6 -3 -2 -1 -3 -2 -1 -1 -2 -3  0 -3  1  1 -1 -8
I -1 -2 -2 -3 -3 -3 -2 -4 -3  5  1 -2  2  0 -3 -2  0 -6 -2  3 -2 -2 -1 -8
L -2 -4 -3 -5 -7 -2 -4 -5 -2  1  5 -3  3  1 -3 -3 -2 -2 -2  1 -4 -3 -2 -8
K -2  3  1 -1 -6  0 -1 -3 -1 -2 -3  5  0 -6 -2 -1  0 -4 -5 -3  0  0 -1 -8
M -2 -1 -2 -4 -6 -1 -3 -3 -3  2  3  0  7 -1 -3 -2 -1 -5 -4  1 -3 -2 -1 -8
F -4 -5 -4 -6 -5 -5 -6 -5 -2  0  1 -6 -1  7 -5 -3 -4 -1  4 -2 -5 -6 -3 -8
P  1 -1 -1 -2 -3  0 -1 -1 -1 -3 -3 -2 -3 -5  6  1  0 -6 -6 -2 -2 -1 -1 -8
S  1 -1  1  0  0 -1 -1  1 -1 -2 -3 -1 -2 -3  1  3  2 -2 -3 -2  0 -1  0 -8
T  1 -2  0 -1 -3 -2 -1 -1 -2  0 -2  0 -1 -4  0  2  4 -5 -3  0  0 -1 -1 -8
W -6  1 -4 -7 -8 -5 -8 -7 -3 -6 -2 -4 -5 -1 -6 -2 -5 12 -1 -7 -5 -6 -5 -8
Y -4 -5 -2 -5 -1 -5 -4 -6  0 -2 -2 -5 -4  4 -6 -3 -3 -1  8 -3 -3 -4 -3 -8
V  0 -3 -2 -3 -2 -2 -2 -2 -3  3  1 -3  1 -2 -2 -2  0 -7 -3  5 -3 -2 -1 -8
B  0 -2  3  4 -5  1  2  0  1 -2 -4  0 -3 -5 -2  0  0 -5 -3 -3  3  2 -1 -8
Z  0 -1  1  3 -6  4  4 -1  1 -2 -3  0 -2 -6 -1 -1 -1 -6 -4 -2  2  4 -1 -8
X -1 -1 -1 -1 -4 -1 -1 -1 -1 -1 -2 -1 -1 -3 -1  0 -1 -5 -3 -1 -1 -1 -1 -8
* -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8  1




    © 2015 - 2025 Weber Informatics LLC | Privacy Policy