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    Download biojava-alignment JAR 6.0.0-alpha6 with all dependencies


    Files of the artifact biojava-alignment version 6.0.0-alpha6 from the group org.biojava.

    Artifact biojava-alignment
    Group org.biojava
    Version 6.0.0-alpha6


    Please rate this JAR file. Is it a good library?

    9 downloads

    Source code of biojava-alignment version 6.0.0-alpha6

    META-INF
    META-INF.META-INF.MANIFEST.MF
    META-INF.maven.org.biojava.biojava-alignment
    META-INF.maven.org.biojava.biojava-alignment.META-INF.maven.org.biojava.biojava-alignment.pom.properties
    META-INF.maven.org.biojava.biojava-alignment.META-INF.maven.org.biojava.biojava-alignment.pom.xml
    .PF00104_small.fasta
    demo
    demo.demo.CookbookMSA
    demo.demo.DemoAlignProteins
    demo.demo.DemoDistanceTree
    demo.demo.DemoLoadSubstMax
    demo.demo.TestDNANeedlemanWunsch
    .log4j2.xml
    org.biojava.nbio.alignment
    org.biojava.nbio.alignment.org.biojava.nbio.alignment.Alignments
    org.biojava.nbio.alignment.org.biojava.nbio.alignment.FractionalIdentityInProfileScorer
    org.biojava.nbio.alignment.org.biojava.nbio.alignment.FractionalIdentityScorer
    org.biojava.nbio.alignment.org.biojava.nbio.alignment.FractionalSimilarityInProfileScorer
    org.biojava.nbio.alignment.org.biojava.nbio.alignment.FractionalSimilarityScorer
    org.biojava.nbio.alignment.org.biojava.nbio.alignment.GuideTree
    org.biojava.nbio.alignment.org.biojava.nbio.alignment.NeedlemanWunsch
    org.biojava.nbio.alignment.org.biojava.nbio.alignment.SimpleGapPenalty
    org.biojava.nbio.alignment.org.biojava.nbio.alignment.SimpleProfileProfileAligner
    org.biojava.nbio.alignment.org.biojava.nbio.alignment.SmithWaterman
    org.biojava.nbio.alignment.org.biojava.nbio.alignment.StandardRescoreRefiner
    org.biojava.nbio.alignment.org.biojava.nbio.alignment.SubstitutionMatrixScorer
    org.biojava.nbio.alignment.io
    org.biojava.nbio.alignment.io.org.biojava.nbio.alignment.io.StockholmConsensusAnnotation
    org.biojava.nbio.alignment.io.org.biojava.nbio.alignment.io.StockholmFileAnnotation
    org.biojava.nbio.alignment.io.org.biojava.nbio.alignment.io.StockholmFileParser
    org.biojava.nbio.alignment.io.org.biojava.nbio.alignment.io.StockholmResidueAnnotation
    org.biojava.nbio.alignment.io.org.biojava.nbio.alignment.io.StockholmSequenceAnnotation
    org.biojava.nbio.alignment.io.org.biojava.nbio.alignment.io.StockholmStructure
    org.biojava.nbio.alignment.routines
    org.biojava.nbio.alignment.routines.org.biojava.nbio.alignment.routines.AlignerHelper
    org.biojava.nbio.alignment.routines.org.biojava.nbio.alignment.routines.AnchoredPairwiseSequenceAligner
    org.biojava.nbio.alignment.routines.org.biojava.nbio.alignment.routines.GuanUberbacher
    org.biojava.nbio.alignment.template
    org.biojava.nbio.alignment.template.org.biojava.nbio.alignment.template.AbstractMatrixAligner
    org.biojava.nbio.alignment.template.org.biojava.nbio.alignment.template.AbstractPairwiseSequenceAligner
    org.biojava.nbio.alignment.template.org.biojava.nbio.alignment.template.AbstractProfileProfileAligner
    org.biojava.nbio.alignment.template.org.biojava.nbio.alignment.template.AbstractScorer
    org.biojava.nbio.alignment.template.org.biojava.nbio.alignment.template.Aligner
    org.biojava.nbio.alignment.template.org.biojava.nbio.alignment.template.CallablePairwiseSequenceAligner
    org.biojava.nbio.alignment.template.org.biojava.nbio.alignment.template.CallablePairwiseSequenceScorer
    org.biojava.nbio.alignment.template.org.biojava.nbio.alignment.template.CallableProfileProfileAligner
    org.biojava.nbio.alignment.template.org.biojava.nbio.alignment.template.GapPenalty
    org.biojava.nbio.alignment.template.org.biojava.nbio.alignment.template.GuideTreeNode
    org.biojava.nbio.alignment.template.org.biojava.nbio.alignment.template.HierarchicalClusterer
    org.biojava.nbio.alignment.template.org.biojava.nbio.alignment.template.MatrixAligner
    org.biojava.nbio.alignment.template.org.biojava.nbio.alignment.template.PairInProfileScorer
    org.biojava.nbio.alignment.template.org.biojava.nbio.alignment.template.PairwiseSequenceAligner
    org.biojava.nbio.alignment.template.org.biojava.nbio.alignment.template.PairwiseSequenceScorer
    org.biojava.nbio.alignment.template.org.biojava.nbio.alignment.template.PartitionRefiner
    org.biojava.nbio.alignment.template.org.biojava.nbio.alignment.template.ProfileProfileAligner
    org.biojava.nbio.alignment.template.org.biojava.nbio.alignment.template.ProfileProfileScorer
    org.biojava.nbio.alignment.template.org.biojava.nbio.alignment.template.RescoreRefiner
    org.biojava.nbio.alignment.template.org.biojava.nbio.alignment.template.Scorer
    org.biojava.nbio.phylo
    org.biojava.nbio.phylo.org.biojava.nbio.phylo.Comparison
    org.biojava.nbio.phylo.org.biojava.nbio.phylo.DistanceMatrixCalculator
    org.biojava.nbio.phylo.org.biojava.nbio.phylo.DistanceTreeEvaluator
    org.biojava.nbio.phylo.org.biojava.nbio.phylo.ForesterWrapper
    org.biojava.nbio.phylo.org.biojava.nbio.phylo.TreeConstructor
    org.biojava.nbio.phylo.org.biojava.nbio.phylo.TreeConstructorType
    org.biojava.nbio.phylo.org.biojava.nbio.phylo.TreeType




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