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org.biojava.nbio.ontology.utils.SmallAnnotation Maven / Gradle / Ivy
/*
* BioJava development code
*
* This code may be freely distributed and modified under the
* terms of the GNU Lesser General Public Licence. This should
* be distributed with the code. If you do not have a copy,
* see:
*
* http://www.gnu.org/copyleft/lesser.html
*
* Copyright for this code is held jointly by the individual
* authors. These should be listed in @author doc comments.
*
* For more information on the BioJava project and its aims,
* or to join the biojava-l mailing list, visit the home page
* at:
*
* http://www.biojava.org/
*
*/
package org.biojava.nbio.ontology.utils;
import java.util.Map;
/**
* Annotation that is optimized for memory usage. Access time
* is linear, so SmallAnnotations are not recommended when
* the number of entries is large. However, they are fine for
* small numbers of keys.
*
* @author Thomas Down
* @author Matthew Pocock
* @since 1.2
*
*
* A minimal-memory alternative to SimpleAnnotation
*
*
* When creating a large number of small Annotation instances, it is worth
* instantiating SmallAnnotation. Small is anything up to at least 30 properties
* but will vary with the JavaVM and underlying platform.
*/
public class SmallAnnotation extends AbstractAnnotation {
private Map properties;
@Override
protected final Map getProperties() {
if(!propertiesAllocated()) {
properties = new SmallMap();
}
return properties;
}
@Override
protected final boolean propertiesAllocated() {
return properties != null;
}
/**
* Return a new SmallAnnotation optimised for small sets of properties.
*/
public SmallAnnotation() {
super();
}
/**
* Return a new SmallAnnotation that copies all values from another annoation.
*
* @param ann the Annoation to copy all values from
* @throws NullPointerException if ann is null
*/
public SmallAnnotation(Annotation ann) {
super(ann);
}
/**
* Return a new SmallAnnotation that copies all values from a Map.
*
* @param map the Map to copy values from
*/
public SmallAnnotation(Map map) {
super(map);
}
}
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