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    Download biojava-structure JAR 5.0.0-alpha3 with all dependencies


    The protein structure modules of BioJava.

    Files of the artifact biojava-structure version 5.0.0-alpha3 from the group org.biojava.

    Test

    Download biojava-structure (5.0.0-alpha3)
    Artifact biojava-structure
    Group org.biojava
    Version 5.0.0-alpha3
    Organization not specified
    URL Not specified
    License GNU LGPL v2
    Dependencies amount 18
    Dependencies ${ciftools.artifact}, mmtf-api, mmtf-serialization, mmtf-codec, biojava-alignment, biojava-core, vecmath, jgrapht-core, jakarta.xml.bind-api, jaxb-runtime, jackson-databind, slf4j-api, log4j-slf4j2-impl, log4j-api, log4j-core, junit-jupiter-engine, junit-jupiter-params, junit-vintage-engine,
    There are maybe transitive dependencies!
    There is a newer version: 7.2.2
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    31 downloads

    Source code of biojava-structure version 5.0.0-alpha3

    META-INF
    META-INF.META-INF.MANIFEST.MF
    .about.properties
    .blosum62.mat
    .ce.properties
    chemcomp
    chemcomp.chemcomp.2EP.cif.gz
    chemcomp.chemcomp.2MD.cif.gz
    chemcomp.chemcomp.6MO.cif.gz
    chemcomp.chemcomp.A.cif.gz
    chemcomp.chemcomp.ACY.cif.gz
    chemcomp.chemcomp.ALA.cif.gz
    chemcomp.chemcomp.ANS.cif.gz
    chemcomp.chemcomp.ARG.cif.gz
    chemcomp.chemcomp.ASN.cif.gz
    chemcomp.chemcomp.ASP.cif.gz
    chemcomp.chemcomp.C.cif.gz
    chemcomp.chemcomp.CA.cif.gz
    chemcomp.chemcomp.CMP.cif.gz
    chemcomp.chemcomp.CSE.cif.gz
    chemcomp.chemcomp.CYS.cif.gz
    chemcomp.chemcomp.DA.cif.gz
    chemcomp.chemcomp.DAR.cif.gz
    chemcomp.chemcomp.DC.cif.gz
    chemcomp.chemcomp.DG.cif.gz
    chemcomp.chemcomp.DI.cif.gz
    chemcomp.chemcomp.DOD.cif.gz
    chemcomp.chemcomp.DT.cif.gz
    chemcomp.chemcomp.G.cif.gz
    chemcomp.chemcomp.GLN.cif.gz
    chemcomp.chemcomp.GLU.cif.gz
    chemcomp.chemcomp.GLY.cif.gz
    chemcomp.chemcomp.GOL.cif.gz
    chemcomp.chemcomp.HIS.cif.gz
    chemcomp.chemcomp.HOH.cif.gz
    chemcomp.chemcomp.I.cif.gz
    chemcomp.chemcomp.ILE.cif.gz
    chemcomp.chemcomp.KTH.cif.gz
    chemcomp.chemcomp.LEU.cif.gz
    chemcomp.chemcomp.LYS.cif.gz
    chemcomp.chemcomp.MAL.cif.gz
    chemcomp.chemcomp.MET.cif.gz
    chemcomp.chemcomp.MG.cif.gz
    chemcomp.chemcomp.MGD.cif.gz
    chemcomp.chemcomp.MO.cif.gz
    chemcomp.chemcomp.MSE.cif.gz
    chemcomp.chemcomp.NA.cif.gz
    chemcomp.chemcomp.PHE.cif.gz
    chemcomp.chemcomp.PO4.cif.gz
    chemcomp.chemcomp.PRO.cif.gz
    chemcomp.chemcomp.SEC.cif.gz
    chemcomp.chemcomp.SER.cif.gz
    chemcomp.chemcomp.SF4.cif.gz
    chemcomp.chemcomp.SO4.cif.gz
    chemcomp.chemcomp.THR.cif.gz
    chemcomp.chemcomp.TRP.cif.gz
    chemcomp.chemcomp.TYR.cif.gz
    chemcomp.chemcomp.TYS.cif.gz
    chemcomp.chemcomp.U.cif.gz
    chemcomp.chemcomp.UNX.cif.gz
    chemcomp.chemcomp.VAL.cif.gz
    chemcomp.chemcomp.ZN.cif.gz
    demo
    demo.demo.ChemCompDistribution
    demo.demo.DemoAsa
    demo.demo.DemoAtomCache
    demo.demo.DemoBerkeleyScop
    demo.demo.DemoCATH
    demo.demo.DemoCE
    demo.demo.DemoCeSymm
    demo.demo.DemoChangeChemCompProvider
    demo.demo.DemoCommandLineStartup
    demo.demo.DemoContacts
    demo.demo.DemoCrystalInterfaces
    demo.demo.DemoDomainsplit
    demo.demo.DemoFATCAT
    demo.demo.DemoLoadSecStruc
    demo.demo.DemoLoadStructure
    demo.demo.DemoMMCIFReader
    demo.demo.DemoMultipleMC
    demo.demo.DemoSCOP
    demo.demo.DemoSecStrucCalc
    .jfatcat.properties
    .log4j2.xml
    org.biojava.nbio.structure
    org.biojava.nbio.structure.org.biojava.nbio.structure.AminoAcid
    org.biojava.nbio.structure.org.biojava.nbio.structure.AminoAcidImpl
    org.biojava.nbio.structure.org.biojava.nbio.structure.Atom
    org.biojava.nbio.structure.org.biojava.nbio.structure.AtomImpl
    org.biojava.nbio.structure.org.biojava.nbio.structure.AtomIterator
    org.biojava.nbio.structure.org.biojava.nbio.structure.AtomPositionMap
    org.biojava.nbio.structure.org.biojava.nbio.structure.AugmentedResidueRange
    org.biojava.nbio.structure.org.biojava.nbio.structure.Author
    org.biojava.nbio.structure.org.biojava.nbio.structure.BioAssemblyIdentifier
    org.biojava.nbio.structure.org.biojava.nbio.structure.Bond
    org.biojava.nbio.structure.org.biojava.nbio.structure.BondImpl
    org.biojava.nbio.structure.org.biojava.nbio.structure.BondType
    org.biojava.nbio.structure.org.biojava.nbio.structure.Calc
    org.biojava.nbio.structure.org.biojava.nbio.structure.Chain
    org.biojava.nbio.structure.org.biojava.nbio.structure.ChainImpl
    org.biojava.nbio.structure.org.biojava.nbio.structure.DBRef
    org.biojava.nbio.structure.org.biojava.nbio.structure.Element
    org.biojava.nbio.structure.org.biojava.nbio.structure.ElementType
    org.biojava.nbio.structure.org.biojava.nbio.structure.EntityInfo
    org.biojava.nbio.structure.org.biojava.nbio.structure.EntityType
    org.biojava.nbio.structure.org.biojava.nbio.structure.ExperimentalTechnique
    org.biojava.nbio.structure.org.biojava.nbio.structure.Group
    org.biojava.nbio.structure.org.biojava.nbio.structure.GroupIterator
    org.biojava.nbio.structure.org.biojava.nbio.structure.GroupType
    org.biojava.nbio.structure.org.biojava.nbio.structure.HetatomImpl
    org.biojava.nbio.structure.org.biojava.nbio.structure.Identifier
    org.biojava.nbio.structure.org.biojava.nbio.structure.JournalArticle
    org.biojava.nbio.structure.org.biojava.nbio.structure.Mutator
    org.biojava.nbio.structure.org.biojava.nbio.structure.NucleotideImpl
    org.biojava.nbio.structure.org.biojava.nbio.structure.PDBCrystallographicInfo
    org.biojava.nbio.structure.org.biojava.nbio.structure.PDBHeader
    org.biojava.nbio.structure.org.biojava.nbio.structure.PDBRecord
    org.biojava.nbio.structure.org.biojava.nbio.structure.PDBStatus
    org.biojava.nbio.structure.org.biojava.nbio.structure.PassthroughIdentifier
    org.biojava.nbio.structure.org.biojava.nbio.structure.ResidueNumber
    org.biojava.nbio.structure.org.biojava.nbio.structure.ResidueRange
    org.biojava.nbio.structure.org.biojava.nbio.structure.ResidueRangeAndLength
    org.biojava.nbio.structure.org.biojava.nbio.structure.SVDSuperimposer
    org.biojava.nbio.structure.org.biojava.nbio.structure.SeqMisMatch
    org.biojava.nbio.structure.org.biojava.nbio.structure.SeqMisMatchImpl
    org.biojava.nbio.structure.org.biojava.nbio.structure.Site
    org.biojava.nbio.structure.org.biojava.nbio.structure.StandardAminoAcid
    org.biojava.nbio.structure.org.biojava.nbio.structure.Structure
    org.biojava.nbio.structure.org.biojava.nbio.structure.StructureException
    org.biojava.nbio.structure.org.biojava.nbio.structure.StructureIO
    org.biojava.nbio.structure.org.biojava.nbio.structure.StructureIdentifier
    org.biojava.nbio.structure.org.biojava.nbio.structure.StructureImpl
    org.biojava.nbio.structure.org.biojava.nbio.structure.StructureTools
    org.biojava.nbio.structure.org.biojava.nbio.structure.SubstructureIdentifier
    org.biojava.nbio.structure.org.biojava.nbio.structure.URLIdentifier
    org.biojava.nbio.structure.align
    org.biojava.nbio.structure.align.org.biojava.nbio.structure.align.AFPTwister
    org.biojava.nbio.structure.align.org.biojava.nbio.structure.align.AbstractStructureAlignment
    org.biojava.nbio.structure.align.org.biojava.nbio.structure.align.BioJavaStructureAlignment
    org.biojava.nbio.structure.align.org.biojava.nbio.structure.align.CallableStructureAlignment
    org.biojava.nbio.structure.align.org.biojava.nbio.structure.align.ClusterAltAligs
    org.biojava.nbio.structure.align.org.biojava.nbio.structure.align.FarmJob
    org.biojava.nbio.structure.align.org.biojava.nbio.structure.align.MultiThreadedDBSearch
    org.biojava.nbio.structure.align.org.biojava.nbio.structure.align.MultipleStructureAligner
    org.biojava.nbio.structure.align.org.biojava.nbio.structure.align.StrucAligParameters
    org.biojava.nbio.structure.align.org.biojava.nbio.structure.align.StructureAlignment
    org.biojava.nbio.structure.align.org.biojava.nbio.structure.align.StructureAlignmentFactory
    org.biojava.nbio.structure.align.org.biojava.nbio.structure.align.StructurePairAligner
    org.biojava.nbio.structure.align.ce
    org.biojava.nbio.structure.align.ce.org.biojava.nbio.structure.align.ce.AbstractUserArgumentProcessor
    org.biojava.nbio.structure.align.ce.org.biojava.nbio.structure.align.ce.CECPParameters
    org.biojava.nbio.structure.align.ce.org.biojava.nbio.structure.align.ce.CECalculator
    org.biojava.nbio.structure.align.ce.org.biojava.nbio.structure.align.ce.CeCPMain
    org.biojava.nbio.structure.align.ce.org.biojava.nbio.structure.align.ce.CeCPUserArgumentProcessor
    org.biojava.nbio.structure.align.ce.org.biojava.nbio.structure.align.ce.CeCalculatorEnhanced
    org.biojava.nbio.structure.align.ce.org.biojava.nbio.structure.align.ce.CeMain
    org.biojava.nbio.structure.align.ce.org.biojava.nbio.structure.align.ce.CeParameters
    org.biojava.nbio.structure.align.ce.org.biojava.nbio.structure.align.ce.CeSideChainMain
    org.biojava.nbio.structure.align.ce.org.biojava.nbio.structure.align.ce.CeSideChainUserArgumentProcessor
    org.biojava.nbio.structure.align.ce.org.biojava.nbio.structure.align.ce.CeUserArgumentProcessor
    org.biojava.nbio.structure.align.ce.org.biojava.nbio.structure.align.ce.ConfigStrucAligParams
    org.biojava.nbio.structure.align.ce.org.biojava.nbio.structure.align.ce.GuiWrapper
    org.biojava.nbio.structure.align.ce.org.biojava.nbio.structure.align.ce.MatrixListener
    org.biojava.nbio.structure.align.ce.org.biojava.nbio.structure.align.ce.OptimalCECPMain
    org.biojava.nbio.structure.align.ce.org.biojava.nbio.structure.align.ce.OptimalCECPParameters
    org.biojava.nbio.structure.align.ce.org.biojava.nbio.structure.align.ce.StartupParameters
    org.biojava.nbio.structure.align.ce.org.biojava.nbio.structure.align.ce.UserArgumentProcessor
    org.biojava.nbio.structure.align.ce.org.biojava.nbio.structure.align.ce.package.html
    org.biojava.nbio.structure.align.client
    org.biojava.nbio.structure.align.client.org.biojava.nbio.structure.align.client.CountProgressListener
    org.biojava.nbio.structure.align.client.org.biojava.nbio.structure.align.client.FarmJobParameters
    org.biojava.nbio.structure.align.client.org.biojava.nbio.structure.align.client.FarmJobRunnable
    org.biojava.nbio.structure.align.client.org.biojava.nbio.structure.align.client.JFatCatClient
    org.biojava.nbio.structure.align.client.org.biojava.nbio.structure.align.client.JobKillException
    org.biojava.nbio.structure.align.client.org.biojava.nbio.structure.align.client.PdbPair
    org.biojava.nbio.structure.align.client.org.biojava.nbio.structure.align.client.StructureName
    org.biojava.nbio.structure.align.client.org.biojava.nbio.structure.align.client.package.html
    org.biojava.nbio.structure.align.events
    org.biojava.nbio.structure.align.events.org.biojava.nbio.structure.align.events.AlignmentProgressListener
    org.biojava.nbio.structure.align.fatcat
    org.biojava.nbio.structure.align.fatcat.org.biojava.nbio.structure.align.fatcat.FatCat
    org.biojava.nbio.structure.align.fatcat.org.biojava.nbio.structure.align.fatcat.FatCatFlexible
    org.biojava.nbio.structure.align.fatcat.org.biojava.nbio.structure.align.fatcat.FatCatRigid
    org.biojava.nbio.structure.align.fatcat.org.biojava.nbio.structure.align.fatcat.FatCatUserArgumentProcessor
    org.biojava.nbio.structure.align.fatcat.calc
    org.biojava.nbio.structure.align.fatcat.calc.org.biojava.nbio.structure.align.fatcat.calc.AFPCalculator
    org.biojava.nbio.structure.align.fatcat.calc.org.biojava.nbio.structure.align.fatcat.calc.AFPChainer
    org.biojava.nbio.structure.align.fatcat.calc.org.biojava.nbio.structure.align.fatcat.calc.AFPOptimizer
    org.biojava.nbio.structure.align.fatcat.calc.org.biojava.nbio.structure.align.fatcat.calc.AFPPostProcessor
    org.biojava.nbio.structure.align.fatcat.calc.org.biojava.nbio.structure.align.fatcat.calc.FCAlignHelper
    org.biojava.nbio.structure.align.fatcat.calc.org.biojava.nbio.structure.align.fatcat.calc.FatCatAligner
    org.biojava.nbio.structure.align.fatcat.calc.org.biojava.nbio.structure.align.fatcat.calc.FatCatParameters
    org.biojava.nbio.structure.align.fatcat.calc.org.biojava.nbio.structure.align.fatcat.calc.SigEva
    org.biojava.nbio.structure.align.fatcat.calc.org.biojava.nbio.structure.align.fatcat.calc.StructureAlignmentOptimizer
    org.biojava.nbio.structure.align.fatcat
    org.biojava.nbio.structure.align.fatcat.org.biojava.nbio.structure.align.fatcat.package.html
    org.biojava.nbio.structure.align.helper
    org.biojava.nbio.structure.align.helper.org.biojava.nbio.structure.align.helper.AligMatEl
    org.biojava.nbio.structure.align.helper.org.biojava.nbio.structure.align.helper.AlignTools
    org.biojava.nbio.structure.align.helper.org.biojava.nbio.structure.align.helper.GapArray
    org.biojava.nbio.structure.align.helper.org.biojava.nbio.structure.align.helper.IdxComparator
    org.biojava.nbio.structure.align.helper.org.biojava.nbio.structure.align.helper.IndexPair
    org.biojava.nbio.structure.align.helper.org.biojava.nbio.structure.align.helper.JointFragments
    org.biojava.nbio.structure.align.helper.org.biojava.nbio.structure.align.helper.package.html
    org.biojava.nbio.structure.align.model
    org.biojava.nbio.structure.align.model.org.biojava.nbio.structure.align.model.AFP
    org.biojava.nbio.structure.align.model.org.biojava.nbio.structure.align.model.AFPChain
    org.biojava.nbio.structure.align.model.org.biojava.nbio.structure.align.model.AfpChainWriter
    org.biojava.nbio.structure.align.multiple
    org.biojava.nbio.structure.align.multiple.org.biojava.nbio.structure.align.multiple.AbstractScoresCache
    org.biojava.nbio.structure.align.multiple.org.biojava.nbio.structure.align.multiple.Block
    org.biojava.nbio.structure.align.multiple.org.biojava.nbio.structure.align.multiple.BlockImpl
    org.biojava.nbio.structure.align.multiple.org.biojava.nbio.structure.align.multiple.BlockSet
    org.biojava.nbio.structure.align.multiple.org.biojava.nbio.structure.align.multiple.BlockSetImpl
    org.biojava.nbio.structure.align.multiple.org.biojava.nbio.structure.align.multiple.MultipleAlignment
    org.biojava.nbio.structure.align.multiple.org.biojava.nbio.structure.align.multiple.MultipleAlignmentEnsemble
    org.biojava.nbio.structure.align.multiple.org.biojava.nbio.structure.align.multiple.MultipleAlignmentEnsembleImpl
    org.biojava.nbio.structure.align.multiple.org.biojava.nbio.structure.align.multiple.MultipleAlignmentImpl
    org.biojava.nbio.structure.align.multiple.org.biojava.nbio.structure.align.multiple.ScoresCache
    org.biojava.nbio.structure.align.multiple.mc
    org.biojava.nbio.structure.align.multiple.mc.org.biojava.nbio.structure.align.multiple.mc.MultipleMcMain
    org.biojava.nbio.structure.align.multiple.mc.org.biojava.nbio.structure.align.multiple.mc.MultipleMcOptimizer
    org.biojava.nbio.structure.align.multiple.mc.org.biojava.nbio.structure.align.multiple.mc.MultipleMcParameters
    org.biojava.nbio.structure.align.multiple.util
    org.biojava.nbio.structure.align.multiple.util.org.biojava.nbio.structure.align.multiple.util.CoreSuperimposer
    org.biojava.nbio.structure.align.multiple.util.org.biojava.nbio.structure.align.multiple.util.MultipleAlignmentDisplay
    org.biojava.nbio.structure.align.multiple.util.org.biojava.nbio.structure.align.multiple.util.MultipleAlignmentScorer
    org.biojava.nbio.structure.align.multiple.util.org.biojava.nbio.structure.align.multiple.util.MultipleAlignmentTools
    org.biojava.nbio.structure.align.multiple.util.org.biojava.nbio.structure.align.multiple.util.MultipleAlignmentWriter
    org.biojava.nbio.structure.align.multiple.util.org.biojava.nbio.structure.align.multiple.util.MultipleSuperimposer
    org.biojava.nbio.structure.align.multiple.util.org.biojava.nbio.structure.align.multiple.util.ReferenceSuperimposer
    org.biojava.nbio.structure.align
    org.biojava.nbio.structure.align.org.biojava.nbio.structure.align.package.html
    org.biojava.nbio.structure.align.pairwise
    org.biojava.nbio.structure.align.pairwise.org.biojava.nbio.structure.align.pairwise.AligNPE
    org.biojava.nbio.structure.align.pairwise.org.biojava.nbio.structure.align.pairwise.Alignable
    org.biojava.nbio.structure.align.pairwise.org.biojava.nbio.structure.align.pairwise.AlignmentProgressListener
    org.biojava.nbio.structure.align.pairwise.org.biojava.nbio.structure.align.pairwise.AlignmentResult
    org.biojava.nbio.structure.align.pairwise.org.biojava.nbio.structure.align.pairwise.AltAligComparator
    org.biojava.nbio.structure.align.pairwise.org.biojava.nbio.structure.align.pairwise.AlternativeAlignment
    org.biojava.nbio.structure.align.pairwise.org.biojava.nbio.structure.align.pairwise.FragmentJoiner
    org.biojava.nbio.structure.align.pairwise.org.biojava.nbio.structure.align.pairwise.FragmentPair
    org.biojava.nbio.structure.align.pairwise.org.biojava.nbio.structure.align.pairwise.Gotoh
    org.biojava.nbio.structure.align.pairwise.org.biojava.nbio.structure.align.pairwise.StrCompAlignment
    org.biojava.nbio.structure.align.pairwise.org.biojava.nbio.structure.align.pairwise.package.html
    org.biojava.nbio.structure.align.seq
    org.biojava.nbio.structure.align.seq.org.biojava.nbio.structure.align.seq.SmithWaterman3DParameters
    org.biojava.nbio.structure.align.seq.org.biojava.nbio.structure.align.seq.SmithWaterman3Daligner
    org.biojava.nbio.structure.align.seq.org.biojava.nbio.structure.align.seq.SmithWatermanUserArgumentProcessor
    org.biojava.nbio.structure.align.util
    org.biojava.nbio.structure.align.util.org.biojava.nbio.structure.align.util.AFPAlignmentDisplay
    org.biojava.nbio.structure.align.util.org.biojava.nbio.structure.align.util.AFPChainScorer
    org.biojava.nbio.structure.align.util.org.biojava.nbio.structure.align.util.AlignmentTools
    org.biojava.nbio.structure.align.util.org.biojava.nbio.structure.align.util.AtomCache
    org.biojava.nbio.structure.align.util.org.biojava.nbio.structure.align.util.CacheFactory
    org.biojava.nbio.structure.align.util.org.biojava.nbio.structure.align.util.CliTools
    org.biojava.nbio.structure.align.util.org.biojava.nbio.structure.align.util.CollectionTools
    org.biojava.nbio.structure.align.util.org.biojava.nbio.structure.align.util.ConfigurationException
    org.biojava.nbio.structure.align.util.org.biojava.nbio.structure.align.util.HTTPConnectionTools
    org.biojava.nbio.structure.align.util.org.biojava.nbio.structure.align.util.ResourceManager
    org.biojava.nbio.structure.align.util.org.biojava.nbio.structure.align.util.RotationAxis
    org.biojava.nbio.structure.align.util.org.biojava.nbio.structure.align.util.SynchronizedOutFile
    org.biojava.nbio.structure.align.util.org.biojava.nbio.structure.align.util.UserConfiguration
    org.biojava.nbio.structure.align.xml
    org.biojava.nbio.structure.align.xml.org.biojava.nbio.structure.align.xml.AFPChainFlipper
    org.biojava.nbio.structure.align.xml.org.biojava.nbio.structure.align.xml.AFPChainXMLConverter
    org.biojava.nbio.structure.align.xml.org.biojava.nbio.structure.align.xml.AFPChainXMLParser
    org.biojava.nbio.structure.align.xml.org.biojava.nbio.structure.align.xml.HasResultXMLConverter
    org.biojava.nbio.structure.align.xml.org.biojava.nbio.structure.align.xml.MultipleAlignmentXMLConverter
    org.biojava.nbio.structure.align.xml.org.biojava.nbio.structure.align.xml.MultipleAlignmentXMLParser
    org.biojava.nbio.structure.align.xml.org.biojava.nbio.structure.align.xml.PdbPairXMLConverter
    org.biojava.nbio.structure.align.xml.org.biojava.nbio.structure.align.xml.PdbPairsMessage
    org.biojava.nbio.structure.align.xml.org.biojava.nbio.structure.align.xml.PositionInQueueXMLConverter
    org.biojava.nbio.structure.align.xml.org.biojava.nbio.structure.align.xml.RepresentativeXMLConverter
    org.biojava.nbio.structure.align.xml.org.biojava.nbio.structure.align.xml.package.html
    org.biojava.nbio.structure.asa
    org.biojava.nbio.structure.asa.org.biojava.nbio.structure.asa.AsaCalculator
    org.biojava.nbio.structure.asa.org.biojava.nbio.structure.asa.GroupAsa
    org.biojava.nbio.structure.cath
    org.biojava.nbio.structure.cath.org.biojava.nbio.structure.cath.CathCategory
    org.biojava.nbio.structure.cath.org.biojava.nbio.structure.cath.CathDatabase
    org.biojava.nbio.structure.cath.org.biojava.nbio.structure.cath.CathDomain
    org.biojava.nbio.structure.cath.org.biojava.nbio.structure.cath.CathFactory
    org.biojava.nbio.structure.cath.org.biojava.nbio.structure.cath.CathFragment
    org.biojava.nbio.structure.cath.org.biojava.nbio.structure.cath.CathInstallation
    org.biojava.nbio.structure.cath.org.biojava.nbio.structure.cath.CathNode
    org.biojava.nbio.structure.cath.org.biojava.nbio.structure.cath.CathSegment
    org.biojava.nbio.structure.contact
    org.biojava.nbio.structure.contact.org.biojava.nbio.structure.contact.AtomContact
    org.biojava.nbio.structure.contact.org.biojava.nbio.structure.contact.AtomContactSet
    org.biojava.nbio.structure.contact.org.biojava.nbio.structure.contact.AtomIdentifier
    org.biojava.nbio.structure.contact.org.biojava.nbio.structure.contact.BoundingBox
    org.biojava.nbio.structure.contact.org.biojava.nbio.structure.contact.Grid
    org.biojava.nbio.structure.contact.org.biojava.nbio.structure.contact.GridCell
    org.biojava.nbio.structure.contact.org.biojava.nbio.structure.contact.GroupContact
    org.biojava.nbio.structure.contact.org.biojava.nbio.structure.contact.GroupContactSet
    org.biojava.nbio.structure.contact.org.biojava.nbio.structure.contact.Pair
    org.biojava.nbio.structure.contact.org.biojava.nbio.structure.contact.ResidueIdentifier
    org.biojava.nbio.structure.contact.org.biojava.nbio.structure.contact.StructureInterface
    org.biojava.nbio.structure.contact.org.biojava.nbio.structure.contact.StructureInterfaceCluster
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    org.biojava.nbio.structure.symmetry.core.org.biojava.nbio.structure.symmetry.core.SequenceAlignmentCluster
    org.biojava.nbio.structure.symmetry.core.org.biojava.nbio.structure.symmetry.core.SubunitGraph
    org.biojava.nbio.structure.symmetry.core.org.biojava.nbio.structure.symmetry.core.Subunits
    org.biojava.nbio.structure.symmetry.core.org.biojava.nbio.structure.symmetry.core.SystematicSolver
    org.biojava.nbio.structure.symmetry.core.org.biojava.nbio.structure.symmetry.core.UniqueSequenceList
    org.biojava.nbio.structure.symmetry.geometry
    org.biojava.nbio.structure.symmetry.geometry.org.biojava.nbio.structure.symmetry.geometry.DistanceBox
    org.biojava.nbio.structure.symmetry.geometry.org.biojava.nbio.structure.symmetry.geometry.IcosahedralSampler
    org.biojava.nbio.structure.symmetry.geometry.org.biojava.nbio.structure.symmetry.geometry.Icosahedron
    org.biojava.nbio.structure.symmetry.geometry.org.biojava.nbio.structure.symmetry.geometry.MomentsOfInertia
    org.biojava.nbio.structure.symmetry.geometry.org.biojava.nbio.structure.symmetry.geometry.Octahedron
    org.biojava.nbio.structure.symmetry.geometry.org.biojava.nbio.structure.symmetry.geometry.Polyhedron
    org.biojava.nbio.structure.symmetry.geometry.org.biojava.nbio.structure.symmetry.geometry.Prism
    org.biojava.nbio.structure.symmetry.geometry.org.biojava.nbio.structure.symmetry.geometry.RectangularPrism
    org.biojava.nbio.structure.symmetry.geometry.org.biojava.nbio.structure.symmetry.geometry.SphereSampler
    org.biojava.nbio.structure.symmetry.geometry.org.biojava.nbio.structure.symmetry.geometry.SuperPosition
    org.biojava.nbio.structure.symmetry.geometry.org.biojava.nbio.structure.symmetry.geometry.SuperPositionQCP
    org.biojava.nbio.structure.symmetry.geometry.org.biojava.nbio.structure.symmetry.geometry.Tetrahedron
    org.biojava.nbio.structure.symmetry.internal
    org.biojava.nbio.structure.symmetry.internal.org.biojava.nbio.structure.symmetry.internal.AngleOrderDetectorPlus
    org.biojava.nbio.structure.symmetry.internal.org.biojava.nbio.structure.symmetry.internal.CESymmParameters
    org.biojava.nbio.structure.symmetry.internal.org.biojava.nbio.structure.symmetry.internal.CeSymm
    org.biojava.nbio.structure.symmetry.internal.org.biojava.nbio.structure.symmetry.internal.CeSymmIterative
    org.biojava.nbio.structure.symmetry.internal.org.biojava.nbio.structure.symmetry.internal.CeSymmResult
    org.biojava.nbio.structure.symmetry.internal.org.biojava.nbio.structure.symmetry.internal.GraphComponentOrderDetector
    org.biojava.nbio.structure.symmetry.internal.org.biojava.nbio.structure.symmetry.internal.GraphComponentRefiner
    org.biojava.nbio.structure.symmetry.internal.org.biojava.nbio.structure.symmetry.internal.OrderDetector
    org.biojava.nbio.structure.symmetry.internal.org.biojava.nbio.structure.symmetry.internal.RefinerFailedException
    org.biojava.nbio.structure.symmetry.internal.org.biojava.nbio.structure.symmetry.internal.ResidueGroup
    org.biojava.nbio.structure.symmetry.internal.org.biojava.nbio.structure.symmetry.internal.SequenceFunctionOrderDetector
    org.biojava.nbio.structure.symmetry.internal.org.biojava.nbio.structure.symmetry.internal.SequenceFunctionRefiner
    org.biojava.nbio.structure.symmetry.internal.org.biojava.nbio.structure.symmetry.internal.SymmOptimizer
    org.biojava.nbio.structure.symmetry.internal.org.biojava.nbio.structure.symmetry.internal.SymmetryAxes
    org.biojava.nbio.structure.symmetry.internal.org.biojava.nbio.structure.symmetry.internal.SymmetryRefiner
    org.biojava.nbio.structure.symmetry.misc
    org.biojava.nbio.structure.symmetry.misc.org.biojava.nbio.structure.symmetry.misc.ChainSignature
    org.biojava.nbio.structure.symmetry.misc.org.biojava.nbio.structure.symmetry.misc.ProteinComplexSignature
    org.biojava.nbio.structure.symmetry.utils
    org.biojava.nbio.structure.symmetry.utils.org.biojava.nbio.structure.symmetry.utils.BlastClustReader
    org.biojava.nbio.structure.symmetry.utils.org.biojava.nbio.structure.symmetry.utils.CombinationGenerator
    org.biojava.nbio.structure.symmetry.utils.org.biojava.nbio.structure.symmetry.utils.PermutationGenerator
    org.biojava.nbio.structure.symmetry.utils.org.biojava.nbio.structure.symmetry.utils.SymmetryTools
    org.biojava.nbio.structure.validation
    org.biojava.nbio.structure.validation.org.biojava.nbio.structure.validation.AngleOutlier
    org.biojava.nbio.structure.validation.org.biojava.nbio.structure.validation.BondOutlier
    org.biojava.nbio.structure.validation.org.biojava.nbio.structure.validation.Clash
    org.biojava.nbio.structure.validation.org.biojava.nbio.structure.validation.Entry
    org.biojava.nbio.structure.validation.org.biojava.nbio.structure.validation.ModelledSubgroup
    org.biojava.nbio.structure.validation.org.biojava.nbio.structure.validation.MogAngleOutlier
    org.biojava.nbio.structure.validation.org.biojava.nbio.structure.validation.MogBondOutlier
    org.biojava.nbio.structure.validation.org.biojava.nbio.structure.validation.ObjectFactory
    org.biojava.nbio.structure.validation.org.biojava.nbio.structure.validation.Program
    org.biojava.nbio.structure.validation.org.biojava.nbio.structure.validation.Programs
    org.biojava.nbio.structure.validation.org.biojava.nbio.structure.validation.SymmClash
    org.biojava.nbio.structure.validation.org.biojava.nbio.structure.validation.WwPDBValidationInformation
    org.biojava.nbio.structure.xtal
    org.biojava.nbio.structure.xtal.org.biojava.nbio.structure.xtal.BravaisLattice
    org.biojava.nbio.structure.xtal.org.biojava.nbio.structure.xtal.CrystalBuilder
    org.biojava.nbio.structure.xtal.org.biojava.nbio.structure.xtal.CrystalCell
    org.biojava.nbio.structure.xtal.org.biojava.nbio.structure.xtal.CrystalTransform
    org.biojava.nbio.structure.xtal.org.biojava.nbio.structure.xtal.SpaceGroup
    org.biojava.nbio.structure.xtal.org.biojava.nbio.structure.xtal.SymoplibParser
    org.biojava.nbio.structure.xtal.org.biojava.nbio.structure.xtal.TransformType
    org.biojava.nbio.structure.xtal.org.biojava.nbio.structure.xtal.UnitCellBoundingBox
    org.biojava.nbio.structure.xtal.io
    org.biojava.nbio.structure.xtal.io.org.biojava.nbio.structure.xtal.io.SpaceGroupMapAdapter
    org.biojava.nbio.structure.xtal.io.org.biojava.nbio.structure.xtal.io.SpaceGroupMapElements
    org.biojava.nbio.structure.xtal.io.org.biojava.nbio.structure.xtal.io.SpaceGroupMapRoot
    org.biojava.nbio.structure.xtal.io.org.biojava.nbio.structure.xtal.io.TransfAlgebraicAdapter
    org.biojava.nbio.structure.xtal.io.org.biojava.nbio.structure.xtal.io.TreeMapSpaceGroupWrapper
    org.biojava.nbio.structure.xtal
    org.biojava.nbio.structure.xtal.org.biojava.nbio.structure.xtal.spacegroups.xml




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