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The protein structure modules of BioJava.

There is a newer version: 7.1.3

/*
 * BioJava development code
 *
 * This code may be freely distributed and modified under the
 * terms of the GNU Lesser General Public Licence.  This should
 * be distributed with the code.  If you do not have a copy,
 * see:
 *
 *      http://www.gnu.org/copyleft/lesser.html
 *
 * Copyright for this code is held jointly by the individual
 * authors.  These should be listed in @author doc comments.
 *
 * For more information on the BioJava project and its aims,
 * or to join the biojava-l mailing list, visit the home page
 * at:
 *
 *      http://www.biojava.org/
 *
 * Author: Daniel Asarnow
 * Date:   2012-6-23
 */

package org.biojava.nbio.structure.cath;

import java.io.Serializable;

/** Represents a node in the CATH hierarchy.
 *
 * @author Daniel Asarnow
 */
public class CathNode implements Serializable{

	public static final long serialVersionUID = 1L;

	/**
	 * The CATH code of the node, e.g. "1.10.8.10".
	 */
	String nodeId;

	/**
	 * The CATH code of the parent, e.g. "1.10.8". Calculated during parsing.
	 */
	String parentId;

	/**
	 * The representative domain for this node.
	 */
	String representative;

	/**
	 * A name or description.
	 */
	String description;

	/**
	 * This node's level within the hierarchy. One of CATH, not CATHSOLID.
	 */
	CathCategory category;

	public String getNodeId() {
		return nodeId;
	}

	public void setNodeId(String nodeId) {
		this.nodeId = nodeId;
		this.category = CathCategory.fromCathCode(nodeId);
	}

	public String getParentId() {
		return parentId;
	}

	public void setParentId(String parentId) {
		this.parentId = parentId;
	}

	public String getRepresentative() {
		return representative;
	}

	public void setRepresentative(String representative) {
		this.representative = representative;
	}

	public String getDescription() {
		return description;
	}

	public void setDescription(String description) {
		this.description = description;
	}

	public CathCategory getCategory() {
		return category;
	}

	@Override
	public String toString() {
		return ""; //TODO implement
	}
}