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The protein structure modules of BioJava.

There is a newer version: 7.1.3

/*
 * BioJava development code
 *
 * This code may be freely distributed and modified under the
 * terms of the GNU Lesser General Public Licence.  This should
 * be distributed with the code.  If you do not have a copy,
 * see:
 *
 *      http://www.gnu.org/copyleft/lesser.html
 *
 * Copyright for this code is held jointly by the individual
 * authors.  These should be listed in @author doc comments.
 *
 * For more information on the BioJava project and its aims,
 * or to join the biojava-l mailing list, visit the home page
 * at:
 *
 *      http://www.biojava.org/
 *
 * Author: Daniel Asarnow
 * Date:   2012-6-23
 */

package org.biojava.nbio.structure.cath;

import java.io.Serializable;

/**
 *
 * @author Daniel Asarnow
 */
public class CathSegment implements Serializable{

	public static final long serialVersionUID = 1L;

	/**
	 * The number of this segment within the domain.
	 */
	Integer segmentId;

	/**
	 * The first residue in the segment.
	 * Refers to the complete residue specification (sequence number AND insertion code).
	 */
	String start;

	 /**
	 * The last residue in the segment.
	 * Refers to the complete residue specification (sequence number AND insertion code).
	 */
	String stop;

	/**
	 * Number of residues in the segment. This value is parsed, not calculated.
	 */
	Integer length;

	/**
	 * FASTA header.
	 */
	String sequenceHeader;

	/**
	 * FASTA sequence.
	 */
	String sequence;

	public Integer getSegmentId() {
		return segmentId;
	}

	public void setSegmentId(Integer segmentId) {
		this.segmentId = segmentId;
	}

	public String getStart() {
		return start;
	}

	public void setStart(String start) {
		this.start = start;
	}

	public String  getStop() {
		return stop;
	}

	public void setStop(String  stop) {
		this.stop = stop;
	}

	public Integer getLength() {
		return length;
	}

	public void setLength(Integer length) {
		this.length = length;
	}

	public String getSequenceHeader() {
		return sequenceHeader;
	}

	public void setSequenceHeader(String sequenceHeader) {
		this.sequenceHeader = sequenceHeader;
	}

	public String getSequence() {
		return sequence;
	}

	public void setSequence(String sequence) {
		this.sequence = sequence;
	}

	@Override
	public String toString() {
		return "CathSegment [segmentId=" + segmentId + ", start=" + start
				+ ", stop=" + stop + ", length=" + length + ", sequenceHeader="
				+ sequenceHeader + ", sequence=" + sequence + "]";
	}


}