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The protein structure modules of BioJava.
/*
* BioJava development code
*
* This code may be freely distributed and modified under the
* terms of the GNU Lesser General Public Licence. This should
* be distributed with the code. If you do not have a copy,
* see:
*
* http://www.gnu.org/copyleft/lesser.html
*
* Copyright for this code is held jointly by the individual
* authors. These should be listed in @author doc comments.
*
* For more information on the BioJava project and its aims,
* or to join the biojava-l mailing list, visit the home page
* at:
*
* http://www.biojava.org/
*
*/
/**
*
*
* Interfaces and classes for protein structure (PDB).
*
*
* See also the BioJava 3 tutorial for more information on the protein structure modules.
*
* Parse PDB files
* To load a PDB file see the PDBFileReader class in the
* IO subpackage.
* Parse mmCif files
* To laod a mmCif file see the MMCIFFileReader class.
* The Structure object
* The Structure object allows to access the PDB header information as well
* as to the data from the ATOM records. The header information is currently available through the following objects:
*
* The structure object provides access to the data from the ATOM records through
* a hierarchy of sub-object:
*
* Structure
* |
* Chain
* |
* Group
* |
* Atom
*
* Learn more how to work with groups.
* Other Features
*
* - Calculate protein structure alignments with CE and FATCAT.
* - Serialize PDB files to databases using Hibernate
* - Tools for performing calculations
*
- Display structures in Jmol
*
*
* For more documentation on how to work with the Structure API please
* see
* http://biojava.org/wiki/BioJava:CookBook#Protein_Structure
*
*
* @since 1.5
*/
package org.biojava.nbio.structure;