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    Download biojava3-core JAR 3.0 with all dependencies


    BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of the biojava project is to facilitate rapid application development for bioinformatics.

    Files of the artifact biojava3-core version 3.0 from the group org.biojava.

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    Download biojava3-core (3.0)
    Artifact biojava3-core
    Group org.biojava
    Version 3.0
    Organization BioJava
    URL http://www.biojava.org
    License GNU LGPL v2
    Dependencies amount 0
    Dependencies No dependencies
    There are maybe transitive dependencies!
    The newest version!
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    Source code of biojava3-core version 3.0

    META-INF
    META-INF.META-INF.MANIFEST.MF
    org.biojava3.core.exceptions
    org.biojava3.core.exceptions.org.biojava3.core.exceptions.CompoundNotFoundError
    org.biojava3.core.exceptions.org.biojava3.core.exceptions.FileAccessError
    org.biojava3.core.exceptions.org.biojava3.core.exceptions.HeaderParseException
    org.biojava3.core.exceptions.org.biojava3.core.exceptions.ParserException
    org.biojava3.core.exceptions.org.biojava3.core.exceptions.SequenceLengthError
    org.biojava3.core.exceptions.org.biojava3.core.exceptions.TranslationException
    org.biojava3.core.sequence
    org.biojava3.core.sequence.org.biojava3.core.sequence.AccessionID
    org.biojava3.core.sequence.org.biojava3.core.sequence.BasicSequence
    org.biojava3.core.sequence.org.biojava3.core.sequence.CDSComparator
    org.biojava3.core.sequence.org.biojava3.core.sequence.CDSSequence
    org.biojava3.core.sequence.org.biojava3.core.sequence.ChromosomeSequence
    org.biojava3.core.sequence.org.biojava3.core.sequence.DNASequence
    org.biojava3.core.sequence.org.biojava3.core.sequence.DataSource
    org.biojava3.core.sequence.org.biojava3.core.sequence.ExonComparator
    org.biojava3.core.sequence.org.biojava3.core.sequence.ExonSequence
    org.biojava3.core.sequence.org.biojava3.core.sequence.GeneSequence
    org.biojava3.core.sequence.org.biojava3.core.sequence.IntronSequence
    org.biojava3.core.sequence.org.biojava3.core.sequence.MultipleSequenceAlignment
    org.biojava3.core.sequence.org.biojava3.core.sequence.ProteinSequence
    org.biojava3.core.sequence.org.biojava3.core.sequence.RNASequence
    org.biojava3.core.sequence.org.biojava3.core.sequence.SequenceComparator
    org.biojava3.core.sequence.org.biojava3.core.sequence.SequenceOptimizationHints
    org.biojava3.core.sequence.org.biojava3.core.sequence.StartCodonSequence
    org.biojava3.core.sequence.org.biojava3.core.sequence.StopCodonSequence
    org.biojava3.core.sequence.org.biojava3.core.sequence.Strand
    org.biojava3.core.sequence.org.biojava3.core.sequence.TaxonomyID
    org.biojava3.core.sequence.org.biojava3.core.sequence.TranscriptSequence
    org.biojava3.core.sequence.compound
    org.biojava3.core.sequence.compound.org.biojava3.core.sequence.compound.AmbiguityDNACompoundSet
    org.biojava3.core.sequence.compound.org.biojava3.core.sequence.compound.AmbiguityRNACompoundSet
    org.biojava3.core.sequence.compound.org.biojava3.core.sequence.compound.AminoAcidCompound
    org.biojava3.core.sequence.compound.org.biojava3.core.sequence.compound.AminoAcidCompoundSet
    org.biojava3.core.sequence.compound.org.biojava3.core.sequence.compound.CodonCompound
    org.biojava3.core.sequence.compound.org.biojava3.core.sequence.compound.DNACompoundSet
    org.biojava3.core.sequence.compound.org.biojava3.core.sequence.compound.NucleotideCompound
    org.biojava3.core.sequence.compound.org.biojava3.core.sequence.compound.RNACompoundSet
    org.biojava3.core.sequence.edits
    org.biojava3.core.sequence.edits.org.biojava3.core.sequence.edits.Edit
    org.biojava3.core.sequence.features
    org.biojava3.core.sequence.features.org.biojava3.core.sequence.features.AbstractFeature
    org.biojava3.core.sequence.features.org.biojava3.core.sequence.features.DBReferenceInfo
    org.biojava3.core.sequence.features.org.biojava3.core.sequence.features.DatabaseReferenceInterface
    org.biojava3.core.sequence.features.org.biojava3.core.sequence.features.FeatureInterface
    org.biojava3.core.sequence.features.org.biojava3.core.sequence.features.FeaturesKeyWordInterface
    org.biojava3.core.sequence.features.org.biojava3.core.sequence.features.QuantityFeature
    org.biojava3.core.sequence.features.org.biojava3.core.sequence.features.TextFeature
    org.biojava3.core.sequence.io
    org.biojava3.core.sequence.io.org.biojava3.core.sequence.io.BufferedReaderBytesRead
    org.biojava3.core.sequence.io.org.biojava3.core.sequence.io.DNASequenceCreator
    org.biojava3.core.sequence.io.org.biojava3.core.sequence.io.FastaGeneWriter
    org.biojava3.core.sequence.io.org.biojava3.core.sequence.io.FastaReader
    org.biojava3.core.sequence.io.org.biojava3.core.sequence.io.FastaReaderHelper
    org.biojava3.core.sequence.io.org.biojava3.core.sequence.io.FastaSequenceParser
    org.biojava3.core.sequence.io.org.biojava3.core.sequence.io.FastaWriter
    org.biojava3.core.sequence.io.org.biojava3.core.sequence.io.FastaWriterHelper
    org.biojava3.core.sequence.io.org.biojava3.core.sequence.io.FileProxyProteinSequenceCreator
    org.biojava3.core.sequence.io.org.biojava3.core.sequence.io.GenericFastaHeaderFormat
    org.biojava3.core.sequence.io.org.biojava3.core.sequence.io.GenericFastaHeaderParser
    org.biojava3.core.sequence.io.org.biojava3.core.sequence.io.IUPACParser
    org.biojava3.core.sequence.io.org.biojava3.core.sequence.io.ProteinSequenceCreator
    org.biojava3.core.sequence.io.org.biojava3.core.sequence.io.RNASequenceCreator
    org.biojava3.core.sequence.io.template
    org.biojava3.core.sequence.io.template.org.biojava3.core.sequence.io.template.FastaHeaderFormatInterface
    org.biojava3.core.sequence.io.template.org.biojava3.core.sequence.io.template.FastaHeaderParserInterface
    org.biojava3.core.sequence.io.template.org.biojava3.core.sequence.io.template.SequenceCreatorInterface
    org.biojava3.core.sequence.io.template.org.biojava3.core.sequence.io.template.SequenceParserInterface
    org.biojava3.core.sequence.io.util
    org.biojava3.core.sequence.io.util.org.biojava3.core.sequence.io.util.ClasspathResource
    org.biojava3.core.sequence.io.util.org.biojava3.core.sequence.io.util.IOUtils
    org.biojava3.core.sequence
    org.biojava3.core.sequence.org.biojava3.core.sequence.iupac.txt
    org.biojava3.core.sequence.loader
    org.biojava3.core.sequence.loader.org.biojava3.core.sequence.loader.ArrayListProxySequenceReader
    org.biojava3.core.sequence.loader.org.biojava3.core.sequence.loader.SequenceFileProxyLoader
    org.biojava3.core.sequence.loader.org.biojava3.core.sequence.loader.StringProxySequenceReader
    org.biojava3.core.sequence.loader.org.biojava3.core.sequence.loader.UniprotProxySequenceReader
    org.biojava3.core.sequence.location
    org.biojava3.core.sequence.location.org.biojava3.core.sequence.location.FuzzyPoint
    org.biojava3.core.sequence.location.org.biojava3.core.sequence.location.InsdcLocations
    org.biojava3.core.sequence.location.org.biojava3.core.sequence.location.InsdcParser
    org.biojava3.core.sequence.location.org.biojava3.core.sequence.location.LocationHelper
    org.biojava3.core.sequence.location.org.biojava3.core.sequence.location.SequenceLocation
    org.biojava3.core.sequence.location.org.biojava3.core.sequence.location.SimpleLocation
    org.biojava3.core.sequence.location.org.biojava3.core.sequence.location.SimplePoint
    org.biojava3.core.sequence.location.template
    org.biojava3.core.sequence.location.template.org.biojava3.core.sequence.location.template.AbstractLocation
    org.biojava3.core.sequence.location.template.org.biojava3.core.sequence.location.template.AccesionedLocation
    org.biojava3.core.sequence.location.template.org.biojava3.core.sequence.location.template.Location
    org.biojava3.core.sequence.location.template.org.biojava3.core.sequence.location.template.Point
    org.biojava3.core.sequence.storage
    org.biojava3.core.sequence.storage.org.biojava3.core.sequence.storage.ArrayListSequenceReader
    org.biojava3.core.sequence.storage.org.biojava3.core.sequence.storage.BitSequenceReader
    org.biojava3.core.sequence.storage.org.biojava3.core.sequence.storage.FourBitSequenceReader
    org.biojava3.core.sequence.storage.org.biojava3.core.sequence.storage.JoiningSequenceReader
    org.biojava3.core.sequence.storage.org.biojava3.core.sequence.storage.SequenceAsStringHelper
    org.biojava3.core.sequence.storage.org.biojava3.core.sequence.storage.SingleCompoundSequenceReader
    org.biojava3.core.sequence.storage.org.biojava3.core.sequence.storage.TwoBitSequenceReader
    org.biojava3.core.sequence.template
    org.biojava3.core.sequence.template.org.biojava3.core.sequence.template.AbstractCompound
    org.biojava3.core.sequence.template.org.biojava3.core.sequence.template.AbstractCompoundSet
    org.biojava3.core.sequence.template.org.biojava3.core.sequence.template.AbstractCompoundTranslator
    org.biojava3.core.sequence.template.org.biojava3.core.sequence.template.AbstractNucleotideCompoundSet
    org.biojava3.core.sequence.template.org.biojava3.core.sequence.template.AbstractSequence
    org.biojava3.core.sequence.template.org.biojava3.core.sequence.template.Accessioned
    org.biojava3.core.sequence.template.org.biojava3.core.sequence.template.ComplementCompound
    org.biojava3.core.sequence.template.org.biojava3.core.sequence.template.Compound
    org.biojava3.core.sequence.template.org.biojava3.core.sequence.template.CompoundSet
    org.biojava3.core.sequence.template.org.biojava3.core.sequence.template.CompoundTranslator
    org.biojava3.core.sequence.template.org.biojava3.core.sequence.template.LightweightProfile
    org.biojava3.core.sequence.template.org.biojava3.core.sequence.template.ProxySequenceReader
    org.biojava3.core.sequence.template.org.biojava3.core.sequence.template.Sequence
    org.biojava3.core.sequence.template.org.biojava3.core.sequence.template.SequenceMixin
    org.biojava3.core.sequence.template.org.biojava3.core.sequence.template.SequenceProxyView
    org.biojava3.core.sequence.template.org.biojava3.core.sequence.template.SequenceReader
    org.biojava3.core.sequence.template.org.biojava3.core.sequence.template.SequenceView
    org.biojava3.core.sequence.transcription
    org.biojava3.core.sequence.transcription.org.biojava3.core.sequence.transcription.CaseInsensitiveCompound
    org.biojava3.core.sequence.transcription.org.biojava3.core.sequence.transcription.DNAToRNATranslator
    org.biojava3.core.sequence.transcription.org.biojava3.core.sequence.transcription.Frame
    org.biojava3.core.sequence.transcription.org.biojava3.core.sequence.transcription.RNAToAminoAcidTranslator
    org.biojava3.core.sequence.transcription.org.biojava3.core.sequence.transcription.Table
    org.biojava3.core.sequence.transcription.org.biojava3.core.sequence.transcription.TranscriptionEngine
    org.biojava3.core.sequence.views
    org.biojava3.core.sequence.views.org.biojava3.core.sequence.views.ComplementSequenceView
    org.biojava3.core.sequence.views.org.biojava3.core.sequence.views.ReversedSequenceView
    org.biojava3.core.sequence.views.org.biojava3.core.sequence.views.RnaSequenceView
    org.biojava3.core.sequence.views.org.biojava3.core.sequence.views.WindowedSequence
    org.biojava3.core.util
    org.biojava3.core.util.org.biojava3.core.util.CRC64Checksum
    org.biojava3.core.util.org.biojava3.core.util.ConcurrencyTools
    org.biojava3.core.util.org.biojava3.core.util.Equals
    org.biojava3.core.util.org.biojava3.core.util.FlatFileCache
    org.biojava3.core.util.org.biojava3.core.util.Hashcoder
    org.biojava3.core.util.org.biojava3.core.util.InputStreamProvider
    org.biojava3.core.util.org.biojava3.core.util.PrettyXMLWriter
    org.biojava3.core.util.org.biojava3.core.util.SequenceTools
    org.biojava3.core.util.org.biojava3.core.util.SoftHashMap
    org.biojava3.core.util.org.biojava3.core.util.UncompressInputStream
    org.biojava3.core.util.org.biojava3.core.util.XMLHelper
    org.biojava3.core.util.org.biojava3.core.util.XMLWriter




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