
org.biojavax.ontology.ComparableTerm Maven / Gradle / Ivy
/*
* BioJava development code
*
* This code may be freely distributed and modified under the
* terms of the GNU Lesser General Public Licence. This should
* be distributed with the code. If you do not have a copy,
* see:
*
* http://www.gnu.org/copyleft/lesser.html
*
* Copyright for this code is held jointly by the individual
* authors. These should be listed in @author doc comments.
*
* For more information on the BioJava project and its aims,
* or to join the biojava-l mailing list, visit the home page
* at:
*
* http://www.biojava.org/
*
*/
package org.biojavax.ontology;
import org.biojava.ontology.Term;
import org.biojava.utils.ChangeType;
import org.biojava.utils.ChangeVetoException;
import org.biojava.utils.Changeable;
import org.biojavax.RankedCrossRefable;
/**
* Makes Term objects comparable properly and adds some extra features to them.
* @author Richard Holland
* @since 1.5
*/
public interface ComparableTerm extends Term,RankedCrossRefable,Comparable,Changeable {
public static final ChangeType IDENTIFIER = new ChangeType(
"This term's identifier has changed",
"org.biojavax.ontology.ComparableTerm",
"IDENTIFIER"
);
public static final ChangeType OBSOLETE = new ChangeType(
"This term's obsolescence has changed",
"org.biojavax.ontology.ComparableTerm",
"OBSOLETE"
);
public static final ChangeType DESCRIPTION = new ChangeType(
"This term's description has changed",
"org.biojavax.ontology.ComparableTerm",
"DESCRIPTION"
);
public static final ChangeType RANKEDCROSSREF = new ChangeType(
"This term's ranked crossrefs have changed",
"org.biojavax.ontology.ComparableTerm",
"RANKEDCROSSREF"
);
/**
* Returns the (optional) identifier associated with this term.
* @return the string identifier.
*/
public String getIdentifier();
/**
* Sets the (optional) identifier associated with this term.
* @param identifier the identifier to give the term. Null will unset it.
* @throws ChangeVetoException if the identifier is unacceptable.
*/
public void setIdentifier(String identifier) throws ChangeVetoException;
/**
* Checks to see if this term is obsolete. As the column in the database
* is nullable, this value is a Boolean object instead of a boolean simple
* type. Hence it may also be null.
* @return true if it is, false if not.
*/
public Boolean getObsolete();
/**
* Sets the obsolescence flag associated with this term.
* @param obsolete true if it is obsolete, false if not. Nullable.
* @throws ChangeVetoException if the change is unacceptable.
*/
public void setObsolete(Boolean obsolete) throws ChangeVetoException;
/**
* Sets the description associated with this term.
* @param description the description to give the term. Nullable.
* @throws ChangeVetoException if the description is unacceptable.
*/
public void setDescription(String description) throws ChangeVetoException;
}
© 2015 - 2025 Weber Informatics LLC | Privacy Policy