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    Download core JAR 1.9.3 with all dependencies


    BioJava core module

    Files of the artifact core version 1.9.3 from the group org.biojava.

    Test

    Download core (1.9.3)
    Artifact core
    Group org.biojava
    Version 1.9.3
    Organization not specified
    URL Not specified
    License not specified
    Dependencies amount 2
    Dependencies commons-dbcp, bytecode,
    There are maybe transitive dependencies!
    There is a newer version: 1.9.7
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    4 downloads

    Source code of core version 1.9.3

    META-INF
    META-INF.META-INF.MANIFEST.MF
    META-INF.services
    META-INF.services.META-INF.services.org.biojava.bio.program.formats.Format
    META-INF.services.META-INF.services.org.biojava.directory.SequenceDBProvider
    obda.naming
    obda.naming.obda.naming.core.xml
    org.biojava.bibliography
    org.biojava.bibliography.org.biojava.bibliography.BibRef
    org.biojava.bibliography.org.biojava.bibliography.BibRefException
    org.biojava.bibliography.org.biojava.bibliography.BibRefQuery
    org.biojava.bibliography.org.biojava.bibliography.BibRefSupport
    org.biojava.bibliography.org.biojava.bibliography.BiblioArticle
    org.biojava.bibliography.org.biojava.bibliography.BiblioBook
    org.biojava.bibliography.org.biojava.bibliography.BiblioBookArticle
    org.biojava.bibliography.org.biojava.bibliography.BiblioCriterion
    org.biojava.bibliography.org.biojava.bibliography.BiblioDescription
    org.biojava.bibliography.org.biojava.bibliography.BiblioEntryStatus
    org.biojava.bibliography.org.biojava.bibliography.BiblioJournal
    org.biojava.bibliography.org.biojava.bibliography.BiblioJournalArticle
    org.biojava.bibliography.org.biojava.bibliography.BiblioOrganisation
    org.biojava.bibliography.org.biojava.bibliography.BiblioPatent
    org.biojava.bibliography.org.biojava.bibliography.BiblioPerson
    org.biojava.bibliography.org.biojava.bibliography.BiblioProceeding
    org.biojava.bibliography.org.biojava.bibliography.BiblioProvider
    org.biojava.bibliography.org.biojava.bibliography.BiblioScope
    org.biojava.bibliography.org.biojava.bibliography.BiblioService
    org.biojava.bibliography.org.biojava.bibliography.BiblioSubject
    org.biojava.bibliography.org.biojava.bibliography.BiblioTechReport
    org.biojava.bibliography.org.biojava.bibliography.BiblioThesis
    org.biojava.bibliography.org.biojava.bibliography.BiblioWebResource
    org.biojava.bibliography.doc-files
    org.biojava.bibliography.doc-files.org.biojava.bibliography.doc-files.BibRefQuery_corba.jpg
    org.biojava.bibliography.doc-files.org.biojava.bibliography.doc-files.BibRefQuery_simple.jpg
    org.biojava.bibliography.doc-files.org.biojava.bibliography.doc-files.BibRefQuery_soap.jpg
    org.biojava.bibliography.doc-files.org.biojava.bibliography.doc-files.bibobjects_java.jpg
    org.biojava.bibliography
    org.biojava.bibliography.org.biojava.bibliography.package.html
    org.biojava.bio
    org.biojava.bio.org.biojava.bio.AbstractAnnotation
    org.biojava.bio.org.biojava.bio.Annotatable
    org.biojava.bio.org.biojava.bio.Annotation
    org.biojava.bio.org.biojava.bio.AnnotationChanger
    org.biojava.bio.org.biojava.bio.AnnotationRenamer
    org.biojava.bio.org.biojava.bio.AnnotationTools
    org.biojava.bio.org.biojava.bio.AnnotationType
    org.biojava.bio.org.biojava.bio.AnyPropertyConstraint
    org.biojava.bio.org.biojava.bio.BeanAsAnnotation
    org.biojava.bio.org.biojava.bio.BioError
    org.biojava.bio.org.biojava.bio.BioException
    org.biojava.bio.org.biojava.bio.BioRuntimeException
    org.biojava.bio.org.biojava.bio.CardinalityConstraint
    org.biojava.bio.org.biojava.bio.CollectionConstraint
    org.biojava.bio.org.biojava.bio.EcNumber
    org.biojava.bio.org.biojava.bio.EmptyAnnotation
    org.biojava.bio.org.biojava.bio.MergeAnnotation
    org.biojava.bio.org.biojava.bio.NoneCollectionConstraint
    org.biojava.bio.org.biojava.bio.NonePropertyConstraint
    org.biojava.bio.org.biojava.bio.OverlayAnnotation
    org.biojava.bio.org.biojava.bio.PropertyConstraint
    org.biojava.bio.org.biojava.bio.SimpleAnnotation
    org.biojava.bio.org.biojava.bio.SmallAnnotation
    org.biojava.bio.alignment
    org.biojava.bio.alignment.org.biojava.bio.alignment.Alignment
    org.biojava.bio.alignment.org.biojava.bio.alignment.SimpleAlignment
    org.biojava.bio.annodb
    org.biojava.bio.annodb.org.biojava.bio.annodb.AnnotationDB
    org.biojava.bio.annodb.org.biojava.bio.annodb.EmptyAnnotationDB
    org.biojava.bio.annodb.org.biojava.bio.annodb.IndexedAnnotationDB
    org.biojava.bio.annodb.org.biojava.bio.annodb.LazyFilteredAnnotationDB
    org.biojava.bio.annodb.org.biojava.bio.annodb.LazySearchedAnnotationDB
    org.biojava.bio.annodb.org.biojava.bio.annodb.MergingAnnotationDB
    org.biojava.bio.annodb.org.biojava.bio.annodb.SimpleAnnotationDB
    org.biojava.bio.annodb.org.biojava.bio.annodb.package.html
    org.biojava.bio.dist
    org.biojava.bio.dist.org.biojava.bio.dist.AbstractDistribution
    org.biojava.bio.dist.org.biojava.bio.dist.AbstractOrderNDistribution
    org.biojava.bio.dist.org.biojava.bio.dist.Count
    org.biojava.bio.dist.org.biojava.bio.dist.Distribution
    org.biojava.bio.dist.org.biojava.bio.dist.DistributionFactory
    org.biojava.bio.dist.org.biojava.bio.dist.DistributionTools
    org.biojava.bio.dist.org.biojava.bio.dist.DistributionTrainer
    org.biojava.bio.dist.org.biojava.bio.dist.DistributionTrainerContext
    org.biojava.bio.dist.org.biojava.bio.dist.GapDistribution
    org.biojava.bio.dist.org.biojava.bio.dist.GeneralNthOrderDistribution
    org.biojava.bio.dist.org.biojava.bio.dist.IgnoreCountsTrainer
    org.biojava.bio.dist.org.biojava.bio.dist.IndexedCount
    org.biojava.bio.dist.org.biojava.bio.dist.IndexedNthOrderDistribution
    org.biojava.bio.dist.org.biojava.bio.dist.OrderNDistribution
    org.biojava.bio.dist.org.biojava.bio.dist.OrderNDistributionFactory
    org.biojava.bio.dist.org.biojava.bio.dist.PairDistribution
    org.biojava.bio.dist.org.biojava.bio.dist.SimpleDistribution
    org.biojava.bio.dist.org.biojava.bio.dist.SimpleDistributionTrainer
    org.biojava.bio.dist.org.biojava.bio.dist.SimpleDistributionTrainerContext
    org.biojava.bio.dist.org.biojava.bio.dist.TranslatedDistribution
    org.biojava.bio.dist.org.biojava.bio.dist.UniformDistribution
    org.biojava.bio.dist.org.biojava.bio.dist.UntrainableDistribution
    org.biojava.bio.dist.org.biojava.bio.dist.XMLDistributionReader
    org.biojava.bio.dist.org.biojava.bio.dist.XMLDistributionWriter
    org.biojava.bio.dist.org.biojava.bio.dist.package.html
    org.biojava.bio.dist.org.biojava.bio.dist.package.inf
    org.biojava.bio.dp
    org.biojava.bio.dp.org.biojava.bio.dp.AbstractTrainer
    org.biojava.bio.dp.org.biojava.bio.dp.BackPointer
    org.biojava.bio.dp.org.biojava.bio.dp.BaumWelchSampler
    org.biojava.bio.dp.org.biojava.bio.dp.BaumWelchTrainer
    org.biojava.bio.dp.org.biojava.bio.dp.DP
    org.biojava.bio.dp.org.biojava.bio.dp.DPFactory
    org.biojava.bio.dp.org.biojava.bio.dp.DPMatrix
    org.biojava.bio.dp.org.biojava.bio.dp.DotState
    org.biojava.bio.dp.org.biojava.bio.dp.EmissionState
    org.biojava.bio.dp.org.biojava.bio.dp.FlatModel
    org.biojava.bio.dp.org.biojava.bio.dp.HMMTrainer
    org.biojava.bio.dp.org.biojava.bio.dp.IllegalTransitionException
    org.biojava.bio.dp.org.biojava.bio.dp.MagicalState
    org.biojava.bio.dp.org.biojava.bio.dp.MarkovModel
    org.biojava.bio.dp.org.biojava.bio.dp.ModelInState
    org.biojava.bio.dp.org.biojava.bio.dp.ModelTrainer
    org.biojava.bio.dp.org.biojava.bio.dp.ProfileHMM
    org.biojava.bio.dp.org.biojava.bio.dp.ScoreType
    org.biojava.bio.dp.org.biojava.bio.dp.SimpleDotState
    org.biojava.bio.dp.org.biojava.bio.dp.SimpleEmissionState
    org.biojava.bio.dp.org.biojava.bio.dp.SimpleHMMTrainer
    org.biojava.bio.dp.org.biojava.bio.dp.SimpleMarkovModel
    org.biojava.bio.dp.org.biojava.bio.dp.SimpleModelInState
    org.biojava.bio.dp.org.biojava.bio.dp.SimpleModelTrainer
    org.biojava.bio.dp.org.biojava.bio.dp.SimpleStatePath
    org.biojava.bio.dp.org.biojava.bio.dp.SimpleWeightMatrix
    org.biojava.bio.dp.org.biojava.bio.dp.State
    org.biojava.bio.dp.org.biojava.bio.dp.StatePath
    org.biojava.bio.dp.org.biojava.bio.dp.StoppingCriteria
    org.biojava.bio.dp.org.biojava.bio.dp.Trainable
    org.biojava.bio.dp.org.biojava.bio.dp.TrainerTransition
    org.biojava.bio.dp.org.biojava.bio.dp.TrainingAlgorithm
    org.biojava.bio.dp.org.biojava.bio.dp.Transition
    org.biojava.bio.dp.org.biojava.bio.dp.TransitionTrainer
    org.biojava.bio.dp.org.biojava.bio.dp.WMAsMM
    org.biojava.bio.dp.org.biojava.bio.dp.WeightMatrix
    org.biojava.bio.dp.org.biojava.bio.dp.WeightMatrixAnnotator
    org.biojava.bio.dp.org.biojava.bio.dp.XmlMarkovModel
    org.biojava.bio.dp.onehead
    org.biojava.bio.dp.onehead.org.biojava.bio.dp.onehead.AbstractCursor
    org.biojava.bio.dp.onehead.org.biojava.bio.dp.onehead.DPCursor
    org.biojava.bio.dp.onehead.org.biojava.bio.dp.onehead.MatrixCursor
    org.biojava.bio.dp.onehead.org.biojava.bio.dp.onehead.SingleDP
    org.biojava.bio.dp.onehead.org.biojava.bio.dp.onehead.SingleDPMatrix
    org.biojava.bio.dp.onehead.org.biojava.bio.dp.onehead.SmallCursor
    org.biojava.bio.dp.onehead.org.biojava.bio.dp.onehead.package.inf
    org.biojava.bio.dp
    org.biojava.bio.dp.org.biojava.bio.dp.package.html
    org.biojava.bio.dp.org.biojava.bio.dp.package.inf
    org.biojava.bio.dp.twohead
    org.biojava.bio.dp.twohead.org.biojava.bio.dp.twohead.AbstractMatrixPairDPCursor
    org.biojava.bio.dp.twohead.org.biojava.bio.dp.twohead.BackMatrixPairDPCursor
    org.biojava.bio.dp.twohead.org.biojava.bio.dp.twohead.Cell
    org.biojava.bio.dp.twohead.org.biojava.bio.dp.twohead.CellCalculator
    org.biojava.bio.dp.twohead.org.biojava.bio.dp.twohead.CellCalculatorFactory
    org.biojava.bio.dp.twohead.org.biojava.bio.dp.twohead.CellCalculatorFactoryMaker
    org.biojava.bio.dp.twohead.org.biojava.bio.dp.twohead.DPCompiler
    org.biojava.bio.dp.twohead.org.biojava.bio.dp.twohead.DPInterpreter
    org.biojava.bio.dp.twohead.org.biojava.bio.dp.twohead.EmissionCache
    org.biojava.bio.dp.twohead.org.biojava.bio.dp.twohead.LightPairDPCursor
    org.biojava.bio.dp.twohead.org.biojava.bio.dp.twohead.MatrixPairDPCursor
    org.biojava.bio.dp.twohead.org.biojava.bio.dp.twohead.PairDPCursor
    org.biojava.bio.dp.twohead.org.biojava.bio.dp.twohead.PairDPMatrix
    org.biojava.bio.dp.twohead.org.biojava.bio.dp.twohead.PairwiseDP
    org.biojava.bio.dp.twohead.org.biojava.bio.dp.twohead.package.inf
    org.biojava.bio.gui.sequence
    org.biojava.bio.gui.sequence.org.biojava.bio.gui.sequence.NoDesc.html
    org.biojava.bio.gui.sequence.org.biojava.bio.gui.sequence.NoSample.txt
    org.biojava.bio.gui.sequence.org.biojava.bio.gui.sequence.aprDesc.html
    org.biojava.bio.gui.sequence.org.biojava.bio.gui.sequence.aprExamp.apr
    org.biojava.bio.gui.sequence.org.biojava.bio.gui.sequence.fastaDesc.html
    org.biojava.bio.gui.sequence.org.biojava.bio.gui.sequence.fastaExamp.fasta
    org.biojava.bio.gui.sequence.org.biojava.bio.gui.sequence.msfDesc.html
    org.biojava.bio.gui.sequence.org.biojava.bio.gui.sequence.msfExamp.msf
    org.biojava.bio.molbio
    org.biojava.bio.molbio.org.biojava.bio.molbio.Composition
    org.biojava.bio.molbio.org.biojava.bio.molbio.DNAComposition
    org.biojava.bio.molbio.org.biojava.bio.molbio.RestrictionEnzyme
    org.biojava.bio.molbio.org.biojava.bio.molbio.RestrictionEnzymeManager
    org.biojava.bio.molbio.org.biojava.bio.molbio.RestrictionEnzymeManager.properties
    org.biojava.bio.molbio.org.biojava.bio.molbio.RestrictionMapper
    org.biojava.bio.molbio.org.biojava.bio.molbio.RestrictionSite
    org.biojava.bio.molbio.org.biojava.bio.molbio.RestrictionSiteFinder
    org.biojava.bio.molbio.org.biojava.bio.molbio.package.html
    org.biojava.bio.molbio.org.biojava.bio.molbio.rebase_common.dat
    org.biojava.bio
    org.biojava.bio.org.biojava.bio.package.html
    org.biojava.bio.org.biojava.bio.package.inf
    org.biojava.bio.program
    org.biojava.bio.program.org.biojava.bio.program.Meme
    org.biojava.bio.program.blast2html
    org.biojava.bio.program.blast2html.org.biojava.bio.program.blast2html.AbstractAlignmentStyler
    org.biojava.bio.program.blast2html.org.biojava.bio.program.blast2html.AlignmentMarker
    org.biojava.bio.program.blast2html.org.biojava.bio.program.blast2html.AlignmentStyler
    org.biojava.bio.program.blast2html.org.biojava.bio.program.blast2html.Blast2HTMLHandler
    org.biojava.bio.program.blast2html.org.biojava.bio.program.blast2html.BlastMatrixAlignmentStyler
    org.biojava.bio.program.blast2html.org.biojava.bio.program.blast2html.ColourCommand
    org.biojava.bio.program.blast2html.org.biojava.bio.program.blast2html.DatabaseURLGenerator
    org.biojava.bio.program.blast2html.org.biojava.bio.program.blast2html.DefaultURLGeneratorFactory
    org.biojava.bio.program.blast2html.org.biojava.bio.program.blast2html.EbiDatabaseURLGenerator
    org.biojava.bio.program.blast2html.org.biojava.bio.program.blast2html.HTMLRenderer
    org.biojava.bio.program.blast2html.org.biojava.bio.program.blast2html.NcbiDatabaseURLGenerator
    org.biojava.bio.program.blast2html.org.biojava.bio.program.blast2html.SimpleAlignmentStyler
    org.biojava.bio.program.blast2html.org.biojava.bio.program.blast2html.URLGeneratorFactory
    org.biojava.bio.program.blast2html.org.biojava.bio.program.blast2html.package.html
    org.biojava.bio.program.formats
    org.biojava.bio.program.formats.org.biojava.bio.program.formats.Embl
    org.biojava.bio.program.formats.org.biojava.bio.program.formats.Enzyme
    org.biojava.bio.program.formats.org.biojava.bio.program.formats.Format
    org.biojava.bio.program.formats.org.biojava.bio.program.formats.FormatTools
    org.biojava.bio.program.formats.org.biojava.bio.program.formats.Ligand
    org.biojava.bio.program.formats.org.biojava.bio.program.formats.Swissprot
    org.biojava.bio.program.formats.org.biojava.bio.program.formats.package.html
    org.biojava.bio.program.gff
    org.biojava.bio.program.gff.org.biojava.bio.program.gff.GFFComparator
    org.biojava.bio.program.gff.org.biojava.bio.program.gff.GFFDocumentHandler
    org.biojava.bio.program.gff.org.biojava.bio.program.gff.GFFEntrySet
    org.biojava.bio.program.gff.org.biojava.bio.program.gff.GFFErrorHandler
    org.biojava.bio.program.gff.org.biojava.bio.program.gff.GFFFilterer
    org.biojava.bio.program.gff.org.biojava.bio.program.gff.GFFParser
    org.biojava.bio.program.gff.org.biojava.bio.program.gff.GFFRecord
    org.biojava.bio.program.gff.org.biojava.bio.program.gff.GFFRecordFilter
    org.biojava.bio.program.gff.org.biojava.bio.program.gff.GFFTools
    org.biojava.bio.program.gff.org.biojava.bio.program.gff.GFFWriter
    org.biojava.bio.program.gff.org.biojava.bio.program.gff.IgnoreRecordException
    org.biojava.bio.program.gff.org.biojava.bio.program.gff.SequencesAsGFF
    org.biojava.bio.program.gff.org.biojava.bio.program.gff.SimpleGFFRecord
    org.biojava.bio.program.gff.org.biojava.bio.program.gff.package.html
    org.biojava.bio.program.gff.org.biojava.bio.program.gff.package.inf
    org.biojava.bio.program.gff3
    org.biojava.bio.program.gff3.org.biojava.bio.program.gff3.GFF3DocumentHandler
    org.biojava.bio.program.gff3.org.biojava.bio.program.gff3.GFF3Parser
    org.biojava.bio.program.gff3.org.biojava.bio.program.gff3.GFF3Record
    org.biojava.bio.program.gff3.org.biojava.bio.program.gff3.package.html
    org.biojava.bio.program.hmmer
    org.biojava.bio.program.hmmer.org.biojava.bio.program.hmmer.FullHmmerProfileHMM
    org.biojava.bio.program.hmmer.org.biojava.bio.program.hmmer.HmmerProfileHMM
    org.biojava.bio.program.hmmer.org.biojava.bio.program.hmmer.HmmerProfileParser
    org.biojava.bio.program.hmmer.org.biojava.bio.program.hmmer.ProfileEmissionState
    org.biojava.bio.program.hmmer.org.biojava.bio.program.hmmer.package.html
    org.biojava.bio.program.homologene
    org.biojava.bio.program.homologene.org.biojava.bio.program.homologene.AbstractOrthoPairCollection
    org.biojava.bio.program.homologene.org.biojava.bio.program.homologene.AbstractOrthoPairSet
    org.biojava.bio.program.homologene.org.biojava.bio.program.homologene.AbstractOrthologueSet
    org.biojava.bio.program.homologene.org.biojava.bio.program.homologene.DuplicateTaxonException
    org.biojava.bio.program.homologene.org.biojava.bio.program.homologene.HomologeneBuilder
    org.biojava.bio.program.homologene.org.biojava.bio.program.homologene.HomologeneDB
    org.biojava.bio.program.homologene.org.biojava.bio.program.homologene.HomologeneTools
    org.biojava.bio.program.homologene.org.biojava.bio.program.homologene.OrthoPair
    org.biojava.bio.program.homologene.org.biojava.bio.program.homologene.OrthoPairCollection
    org.biojava.bio.program.homologene.org.biojava.bio.program.homologene.OrthoPairFilter
    org.biojava.bio.program.homologene.org.biojava.bio.program.homologene.OrthoPairSet
    org.biojava.bio.program.homologene.org.biojava.bio.program.homologene.OrthoPairSetFilter
    org.biojava.bio.program.homologene.org.biojava.bio.program.homologene.Orthologue
    org.biojava.bio.program.homologene.org.biojava.bio.program.homologene.OrthologueFilter
    org.biojava.bio.program.homologene.org.biojava.bio.program.homologene.OrthologueSet
    org.biojava.bio.program.homologene.org.biojava.bio.program.homologene.SimilarityType
    org.biojava.bio.program.homologene.org.biojava.bio.program.homologene.SimpleHomologeneBuilder
    org.biojava.bio.program.homologene.org.biojava.bio.program.homologene.SimpleHomologeneDB
    org.biojava.bio.program.homologene.org.biojava.bio.program.homologene.SimpleOrthoPair
    org.biojava.bio.program.homologene.org.biojava.bio.program.homologene.SimpleOrthoPairCollection
    org.biojava.bio.program.homologene.org.biojava.bio.program.homologene.SimpleOrthoPairSet
    org.biojava.bio.program.homologene.org.biojava.bio.program.homologene.SimpleOrthologue
    org.biojava.bio.program.homologene.org.biojava.bio.program.homologene.SimpleOrthologueSet
    org.biojava.bio.program.homologene.org.biojava.bio.program.homologene.Taxon
    org.biojava.bio.program.homologene.org.biojava.bio.program.homologene.package.html
    org.biojava.bio.program.indexdb
    org.biojava.bio.program.indexdb.org.biojava.bio.program.indexdb.BioStore
    org.biojava.bio.program.indexdb.org.biojava.bio.program.indexdb.BioStoreFactory
    org.biojava.bio.program.indexdb.org.biojava.bio.program.indexdb.CacheList
    org.biojava.bio.program.indexdb.org.biojava.bio.program.indexdb.ConfigFile
    org.biojava.bio.program.indexdb.org.biojava.bio.program.indexdb.IndexStore
    org.biojava.bio.program.indexdb.org.biojava.bio.program.indexdb.IndexTools
    org.biojava.bio.program.indexdb.org.biojava.bio.program.indexdb.KeyPair
    org.biojava.bio.program.indexdb.org.biojava.bio.program.indexdb.PrimaryIDList
    org.biojava.bio.program.indexdb.org.biojava.bio.program.indexdb.PropertiesAnnotation
    org.biojava.bio.program.indexdb.org.biojava.bio.program.indexdb.Record
    org.biojava.bio.program.indexdb.org.biojava.bio.program.indexdb.SearchableFileAsList
    org.biojava.bio.program.indexdb.org.biojava.bio.program.indexdb.SearchableList
    org.biojava.bio.program.indexdb.org.biojava.bio.program.indexdb.SecondaryFileAsList
    org.biojava.bio.program.indexdb.org.biojava.bio.program.indexdb.package.html
    org.biojava.bio.program
    org.biojava.bio.program.org.biojava.bio.program.package.html
    org.biojava.bio.program.org.biojava.bio.program.package.inf
    org.biojava.bio.program.phred
    org.biojava.bio.program.phred.org.biojava.bio.program.phred.PhredFormat
    org.biojava.bio.program.phred.org.biojava.bio.program.phred.PhredSequence
    org.biojava.bio.program.phred.org.biojava.bio.program.phred.PhredTools
    org.biojava.bio.program.phred.org.biojava.bio.program.phred.Qualitative
    org.biojava.bio.program.phred.org.biojava.bio.program.phred.package.html
    org.biojava.bio.program.ssaha
    org.biojava.bio.program.ssaha.org.biojava.bio.program.ssaha.CompactedDataStore
    org.biojava.bio.program.ssaha.org.biojava.bio.program.ssaha.CompactedDataStoreFactory
    org.biojava.bio.program.ssaha.org.biojava.bio.program.ssaha.DataStore
    org.biojava.bio.program.ssaha.org.biojava.bio.program.ssaha.DataStoreFactory
    org.biojava.bio.program.ssaha.org.biojava.bio.program.ssaha.HitMerger
    org.biojava.bio.program.ssaha.org.biojava.bio.program.ssaha.MappedDataStore
    org.biojava.bio.program.ssaha.org.biojava.bio.program.ssaha.MappedDataStoreFactory
    org.biojava.bio.program.ssaha.org.biojava.bio.program.ssaha.NIODataStore
    org.biojava.bio.program.ssaha.org.biojava.bio.program.ssaha.NIODataStoreFactory
    org.biojava.bio.program.ssaha.org.biojava.bio.program.ssaha.SearchException
    org.biojava.bio.program.ssaha.org.biojava.bio.program.ssaha.SearchListener
    org.biojava.bio.program.ssaha.org.biojava.bio.program.ssaha.SequenceStreamer
    org.biojava.bio.program.ssaha.org.biojava.bio.program.ssaha.package.html
    org.biojava.bio.program.ssbind
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