org.biopax.ols.Constants Maven / Gradle / Ivy

Go to download

Show more of this group Show more artifacts with this name
Show all versions of obo-fetcher Show documentation

OBO ontology access and handling (derived from EBI PSIDEV Ontology Manager and OLS)

There is a newer version: 6.0.0

package org.biopax.ols;

/*
 *
 */


import java.util.Collection;
import java.util.HashSet;

/**
 * User: Richard Cote
 * Date: 21-Jul-2005
 * Time: 14:38:16
 *
 * @author Richard Cote
 * @version $Id: Constants.java,v 1.15 2008/02/12 16:47:13 rglcote Exp $
 */
public class Constants {

    public static final String OLS_CONFIG_FILE = "ols-config.properties";
    public static final String OLS_DBALIAS = "OLS_MAIN";
    public static final String OLS_FAILOVER_DBALIAS = "OLS_FAILOVER";


    public static final int IS_A_RELATION_TYPE_ID = 1;
    public static final int PART_OF_RELATION_TYPE_ID = 2;
    public static final int DEVELOPS_FROM_RELATION_TYPE_ID = 3;
    public static final int OTHER_RELATION_TYPE_ID = 4;
    public static final int NO_DISTANCE_CONSTRAINT = -1;
    public static final String DEFINITION = "definition";

    public static final String IS_A_RELATION_TYPE = "is_a";
    public static final String PART_OF_RELATION_TYPE = "part_of";
    public static final String DEVELOPS_FROM_RELATION_TYPE = "develops_from";
    public static final String ALT_ID_SYNONYM_TYPE = "alt_id";
    public static final String EXACT_SYNONYM_TYPE = "exact";
    public static final String NARROW_SYNONYM_TYPE = "narrow";
    public static final String BROAD_SYNONYM_TYPE = "broad";
    public static final String RELATED_SYNONYM_TYPE = "related";
    public static final String DEFAULT_SYNONYM_TYPE = "synonym";
    public static final String ONTOLOGY_NAME_ATTRIBUTE = "loaded_ontology";
    public static final String PREFERRED_NAME = "preferred name";

    public static final int RETURN_VALUE_OK = 0;
    public static final int RETURN_VALUE_OK_NO_ONTOLOGIES_LOADED = 1;
    public static final int RETURN_VALUE_ERROR = 2;
    public static final int RETURN_VALUE_CVS_ERROR = 3;

    /*
        These are relationship types that need to be ignored because they
        will break the ontology browser and the dot executable
     */
    public static final Collection RELATIONSHIPS_TO_IGNORE = new HashSet();
    static {
        RELATIONSHIPS_TO_IGNORE.add("participates_in");
        RELATIONSHIPS_TO_IGNORE.add("disjoint_from");
    }
}