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Jenetics - Java Genetic Algorithm Library
There is a newer version: 3.6.0
/*
 * Java Genetic Algorithm Library (jenetics-3.2.0).
 * Copyright (c) 2007-2015 Franz Wilhelmstötter
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 *      http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 *
 * Author:
 *    Franz Wilhelmstötter ([email protected])
 */
package org.jenetics;

import static java.lang.String.format;

import java.util.Random;

import org.jenetics.internal.util.Hash;

import org.jenetics.util.ISeq;
import org.jenetics.util.MSeq;
import org.jenetics.util.Mean;
import org.jenetics.util.RandomRegistry;
import org.jenetics.util.Seq;

/**
 * 
 * The order ({@link #getOrder()}) of this Recombination implementation is two.
 * 
 *
 * @author Franz Wilhelmstötter
 * @since 1.0
 * @version 3.0
 */
public final class MeanAlterer<
	G extends Gene & Mean,
	C extends Comparable
>
	extends Recombinator
{

	/**
	 * Constructs an alterer with a given recombination probability.
	 *
	 * @param probability the crossover probability.
	 * @throws IllegalArgumentException if the {@code probability} is not in the
	 *         valid range of {@code [0, 1]}.
	 */
	public MeanAlterer(final double probability) {
		super(probability, 2);
	}

	/**
	 * Create a new alterer with alter probability of {@code 0.05}.
	 */
	public MeanAlterer() {
		this(0.05);
	}

	@Override
	protected int recombine(
		final Population population,
		final int[] individuals,
		final long generation
	) {
		final Random random = RandomRegistry.getRandom();

		final Phenotype pt1 = population.get(individuals[0]);
		final Phenotype pt2 = population.get(individuals[1]);
		final Genotype gt1 = pt1.getGenotype();
		final Genotype gt2 = pt2.getGenotype();

		final int cindex = random.nextInt(gt1.length());
		final MSeq> c1 = gt1.toSeq().copy();
		final ISeq> c2 = gt2.toSeq();

		// Calculate the mean value of the gene array.
		final MSeq mean = mean(
			c1.get(cindex).toSeq().copy(),
			c2.get(cindex).toSeq()
		);

		c1.set(cindex, c1.get(cindex).newInstance(mean.toISeq()));

		population.set(
			individuals[0],
			pt1.newInstance(gt1.newInstance(c1.toISeq()), generation)
		);

		return 1;
	}

	private static  & Mean>
	MSeq mean(final MSeq a, final Seq b) {
		for (int i = a.length(); --i >= 0;) {
			a.set(i, a.get(i).mean(b.get(i)));
		}
		return a;
	}

	@Override
	public int hashCode() {
		return Hash.of(getClass()).and(super.hashCode()).value();
	}

	@Override
	public boolean equals(final Object obj) {
		return obj instanceof MeanAlterer && super.equals(obj);
	}

	@Override
	public String toString() {
		return format("%s[p=%f]", getClass().getSimpleName(), _probability);
	}

}