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Jenetics - Java Genetic Algorithm Library
/*
* Java Genetic Algorithm Library (jenetics-3.4.0).
* Copyright (c) 2007-2016 Franz Wilhelmstötter
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
* Author:
* Franz Wilhelmstötter ([email protected])
*/
package org.jenetics.engine;
import static java.lang.Math.sqrt;
import static java.lang.String.format;
import java.text.NumberFormat;
import java.time.Duration;
import java.util.function.Consumer;
import org.jenetics.Phenotype;
import org.jenetics.stat.DoubleMomentStatistics;
import org.jenetics.stat.IntMomentStatistics;
import org.jenetics.stat.LongMomentStatistics;
import org.jenetics.stat.MinMax;
/**
* This class can be used to gather additional statistic information of an
* evolution process. The additional information can be useful during the
* development phase of the GA or while testing the GA's performance. The
* following example shows how to integrate the statistics object into
* your evolution stream.
*
* {@code
* final Engine engine = ...
* final EvolutionStatistics statistics =
* EvolutionStatistics.ofNumber();
*
* final Phenotype result = engine.stream()
* .limit(bySteadyFitness(7))
* .limit(100)
* .peek(statistics)
* .collect(toBestPhenotype());
*
* System.println(statistics);
* }
*
* Example output
*
* {@code
* +---------------------------------------------------------------------------+
* | Time statistics |
* +---------------------------------------------------------------------------+
* | Selection: sum=0.046538278000 s; mean=0.003878189833 s |
* | Altering: sum=0.086155457000 s; mean=0.007179621417 s |
* | Fitness calculation: sum=0.022901606000 s; mean=0.001908467167 s |
* | Overall execution: sum=0.147298067000 s; mean=0.012274838917 s |
* +---------------------------------------------------------------------------+
* | Evolution statistics |
* +---------------------------------------------------------------------------+
* | Generations: 12 |
* | Altered: sum=7,331; mean=610.916666667 |
* | Killed: sum=0; mean=0.000000000 |
* | Invalids: sum=0; mean=0.000000000 |
* +---------------------------------------------------------------------------+
* | Population statistics |
* +---------------------------------------------------------------------------+
* | Age: max=11; mean=1.951000; var=5.545190 |
* | Fitness: |
* | min = 0.000000000000 |
* | max = 481.748227114537 |
* | mean = 384.430345078660 |
* | var = 13006.132537301528 |
* | std = 114.044432 |
* +---------------------------------------------------------------------------+
* }
*
* @author Franz Wilhelmstötter
* @since 3.0
* @version 3.0
*/
public abstract class EvolutionStatistics<
C extends Comparable,
FitnessStatistics
>
implements Consumer>
{
// The duration statistics values.
private final DoubleMomentStatistics
_selectionDuration = new DoubleMomentStatistics();
private final DoubleMomentStatistics
_alterDuration = new DoubleMomentStatistics();
private final DoubleMomentStatistics
_evaluationDuration = new DoubleMomentStatistics();
private final DoubleMomentStatistics
_evolveDuration = new DoubleMomentStatistics();
// The evolution statistics values.
private final IntMomentStatistics _killed = new IntMomentStatistics();
private final IntMomentStatistics _invalids = new IntMomentStatistics();
private final IntMomentStatistics _altered = new IntMomentStatistics();
// The population statistics values.
final LongMomentStatistics _age = new LongMomentStatistics();
FitnessStatistics _fitness = null;
EvolutionStatistics() {
}
@Override
public void accept(final EvolutionResult result) {
accept(result.getDurations());
_killed.accept(result.getKillCount());
_invalids.accept(result.getInvalidCount());
_altered.accept(result.getAlterCount());
result.getPopulation()
.forEach(pt -> accept(pt, result.getGeneration()));
}
void accept(final Phenotype pt, final long generation) {
_age.accept(pt.getAge(generation));
}
// Calculate duration statistics
private void accept(final EvolutionDurations durations) {
final double selection =
toSeconds(durations.getOffspringSelectionDuration()) +
toSeconds(durations.getSurvivorsSelectionDuration());
final double alter =
toSeconds(durations.getOffspringAlterDuration()) +
toSeconds(durations.getOffspringFilterDuration());
_selectionDuration.accept(selection);
_alterDuration.accept(alter);
_evaluationDuration
.accept(toSeconds(durations.getEvaluationDuration()));
_evolveDuration
.accept(toSeconds(durations.getEvolveDuration()));
}
private static double toSeconds(final Duration duration) {
return duration.toNanos()/1_000_000_000.0;
}
/* *************************************************************************
* Evaluation timing statistics
* ************************************************************************/
/**
* Return the duration statistics needed for selecting the population, in
* seconds.
*
* @return the duration statistics needed for selecting the population
*/
public DoubleMomentStatistics getSelectionDuration() {
return _selectionDuration;
}
/**
* Return the duration statistics needed for altering the population, in
* seconds.
*
* @return the duration statistics needed for altering the population
*/
public DoubleMomentStatistics getAlterDuration() {
return _alterDuration;
}
/**
* Return the duration statistics needed for evaluating the fitness function
* of the new individuals, in seconds.
*
* @return the duration statistics needed for evaluating the fitness
* function of the new individuals
*/
public DoubleMomentStatistics getEvaluationDuration() {
return _evaluationDuration;
}
/**
* Return the duration statistics needed for the whole evolve step, in
* seconds.
*
* @return the duration statistics needed for the whole evolve step
*/
public DoubleMomentStatistics getEvolveDuration() {
return _evolveDuration;
}
/* *************************************************************************
* Evolution statistics
* ************************************************************************/
/**
* Return the statistics about the killed individuals during the evolution
* process.
*
* @return killed individual statistics
*/
public IntMomentStatistics getKilled() {
return _killed;
}
/**
* Return the statistics about the invalid individuals during the evolution
* process.
*
* @return invalid individual statistics
*/
public IntMomentStatistics getInvalids() {
return _invalids;
}
/**
* Return the statistics about the altered individuals during the evolution
* process.
*
* @return altered individual statistics
*/
public IntMomentStatistics getAltered() {
return _altered;
}
/**
* Return the statistics about the individuals age.
*
* @return individual age statistics
*/
public LongMomentStatistics getPhenotypeAge() {
return _age;
}
/**
* Return the minimal and maximal fitness.
*
* @return minimal and maximal fitness
*/
public FitnessStatistics getFitness() {
return _fitness;
}
final String cpattern = "| %22s %-51s|\n";
final String spattern = "| %27s %-46s|\n";
@Override
public String toString() {
return
"+---------------------------------------------------------------------------+\n" +
"| Time statistics |\n" +
"+---------------------------------------------------------------------------+\n" +
format(cpattern, "Selection:", d(_selectionDuration)) +
format(cpattern, "Altering:", d(_alterDuration)) +
format(cpattern, "Fitness calculation:", d(_evaluationDuration)) +
format(cpattern, "Overall execution:", d(_evolveDuration)) +
"+---------------------------------------------------------------------------+\n" +
"| Evolution statistics |\n" +
"+---------------------------------------------------------------------------+\n" +
format(cpattern, "Generations:", i(_altered.getCount())) +
format(cpattern, "Altered:", i(_altered)) +
format(cpattern, "Killed:", i(_killed)) +
format(cpattern, "Invalids:", i(_invalids));
}
private static String d(final DoubleMomentStatistics statistics) {
return format(
"sum=%3.12f s; mean=%3.12f s",
statistics.getSum(), statistics.getMean()
);
}
private static String i(final IntMomentStatistics statistics) {
final NumberFormat nf = NumberFormat.getIntegerInstance();
return format(
"sum=%s; mean=%6.9f",
nf.format(statistics.getSum()), statistics.getMean()
);
}
private static String i(final long value) {
final NumberFormat nf = NumberFormat.getIntegerInstance();
return nf.format(value);
}
private static String p(final IntMomentStatistics statistics) {
final NumberFormat nf = NumberFormat.getIntegerInstance();
return format(
"max=%s; mean=%6.6f; var=%6.6f",
nf.format(statistics.getMax()),
statistics.getMean(),
statistics.getVariance()
);
}
private static String p(final LongMomentStatistics statistics) {
final NumberFormat nf = NumberFormat.getIntegerInstance();
return format(
"max=%s; mean=%6.6f; var=%6.6f",
nf.format(statistics.getMax()),
statistics.getMean(),
statistics.getVariance()
);
}
private static final class Comp<
C extends Comparable
>
extends EvolutionStatistics>
{
private Comp() {
_fitness = MinMax.of();
}
@Override
public void accept(final EvolutionResult result) {
if (_fitness.getMax() == null) {
_fitness = MinMax.of(result.getOptimize().ascending());
}
super.accept(result);
}
@Override
void accept(final Phenotype pt, final long generation) {
super.accept(pt, generation);
_fitness.accept(pt.getFitness());
}
@Override
public String toString() {
return super.toString() +
"+---------------------------------------------------------------------------+\n" +
"| Population statistics |\n" +
"+---------------------------------------------------------------------------+\n" +
format(cpattern, "Age:", p(_age)) +
format(cpattern, "Fitness", "") +
format(spattern, "min =", _fitness.getMin()) +
format(spattern, "max =", _fitness.getMax()) +
"+---------------------------------------------------------------------------+";
}
}
private static final class Num>
extends EvolutionStatistics
{
private Num() {
_fitness = new DoubleMomentStatistics();
}
@Override
void accept(final Phenotype pt, final long generation) {
super.accept(pt, generation);
_fitness.accept(pt.getFitness().doubleValue());
}
@Override
public String toString() {
return super.toString() +
"+---------------------------------------------------------------------------+\n" +
"| Population statistics |\n" +
"+---------------------------------------------------------------------------+\n" +
format(cpattern, "Age:", p(_age)) +
format(cpattern, "Fitness:", "") +
format(spattern, "min =", d(_fitness.getMin())) +
format(spattern, "max =", d(_fitness.getMax())) +
format(spattern, "mean =", d(_fitness.getMean())) +
format(spattern, "var =", d(_fitness.getVariance())) +
format(spattern, "std =", d(sqrt(_fitness.getVariance()))) +
"+---------------------------------------------------------------------------+";
}
private static String d(final double value) {
return format("%3.12f", value);
}
}
public static >
EvolutionStatistics> ofComparable() {
return new Comp<>();
}
public static >
EvolutionStatistics ofNumber() {
return new Num<>();
}
}
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