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/**
* Copyright (C) 2019 Bonitasoft S.A.
* Bonitasoft, 32 rue Gustave Eiffel - 38000 Grenoble
* This library is free software; you can redistribute it and/or modify it under the terms
* of the GNU Lesser General Public License as published by the Free Software Foundation
* version 2.1 of the License.
* This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY;
* without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
* See the GNU Lesser General Public License for more details.
* You should have received a copy of the GNU Lesser General Public License along with this
* program; if not, write to the Free Software Foundation, Inc., 51 Franklin Street, Fifth
* Floor, Boston, MA 02110-1301, USA.
**/
package org.bonitasoft.engine.commons.io;
import java.io.BufferedInputStream;
import java.io.BufferedOutputStream;
import java.io.BufferedReader;
import java.io.BufferedWriter;
import java.io.ByteArrayInputStream;
import java.io.ByteArrayOutputStream;
import java.io.File;
import java.io.FileInputStream;
import java.io.FileNotFoundException;
import java.io.FileOutputStream;
import java.io.FileReader;
import java.io.FileWriter;
import java.io.IOException;
import java.io.InputStream;
import java.io.OutputStream;
import java.io.Writer;
import java.math.BigInteger;
import java.net.URI;
import java.net.URL;
import java.security.MessageDigest;
import java.security.NoSuchAlgorithmException;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.Map.Entry;
import java.util.Optional;
import java.util.Properties;
import java.util.Scanner;
import java.util.jar.JarEntry;
import java.util.jar.JarInputStream;
import java.util.jar.JarOutputStream;
import java.util.zip.ZipEntry;
import java.util.zip.ZipInputStream;
import java.util.zip.ZipOutputStream;
import javax.activation.MimetypesFileTypeMap;
import javax.xml.XMLConstants;
import javax.xml.transform.OutputKeys;
import javax.xml.transform.Transformer;
import javax.xml.transform.TransformerException;
import javax.xml.transform.TransformerFactory;
import javax.xml.transform.dom.DOMSource;
import javax.xml.transform.stream.StreamResult;
import org.apache.commons.io.FileUtils;
import org.bonitasoft.engine.commons.ClassDataUtil;
import org.bonitasoft.engine.commons.NullCheckingUtil;
import org.bonitasoft.engine.commons.Pair;
import org.w3c.dom.Document;
/**
* @author Elias Ricken de Medeiros
* @author Matthieu Chaffotte
* @author Celine Souchet
*/
public class IOUtil {
private static final String LINE_SEPARATOR = System.getProperty("line.separator");
public static final String TMP_DIRECTORY = System.getProperty("java.io.tmpdir");
public static final MimetypesFileTypeMap MIMETYPES_FILE_TYPE_MAP = new MimetypesFileTypeMap();
static {
//on jdk 8 there is no png by default in mime types
IOUtil.MIMETYPES_FILE_TYPE_MAP.addMimeTypes("image/png\t\tpng PNG");
IOUtil.MIMETYPES_FILE_TYPE_MAP.addMimeTypes("image/gif\t\tgif GIF");
IOUtil.MIMETYPES_FILE_TYPE_MAP.addMimeTypes("image/jpeg\t\tjpeg jpg jpe JPG");
}
private static final int BUFFER_SIZE = 100000;
public static final String FILE_ENCODING = "UTF-8";
private IOUtil() {
// For Sonar
}
public static List getClassNameList(final byte[] jarContent) throws IOException {
final List classes = new ArrayList<>(10);
JarInputStream stream = null;
ByteArrayInputStream byteArrayInputStream = null;
try {
byteArrayInputStream = new ByteArrayInputStream(jarContent);
stream = new JarInputStream(byteArrayInputStream);
JarEntry nextJarEntry = null;
while ((nextJarEntry = stream.getNextJarEntry()) != null) {
final String name = nextJarEntry.getName();
if (name.endsWith(".class")) {
classes.add(toQualifiedClassName(name));
}
}
} finally {
if (stream != null) {
stream.close();
}
if (byteArrayInputStream != null) {
byteArrayInputStream.close();
}
}
return classes;
}
private static String toQualifiedClassName(final String name) {
return name.replace('/', '.').replaceAll(".class", "");
}
public static void write(final File file, final byte[] fileContent) throws IOException {
NullCheckingUtil.checkArgsNotNull(file, fileContent);
if (!file.exists()) {
file.getParentFile().mkdirs();
file.createNewFile();
}
final OutputStream os = new FileOutputStream(file);
try {
os.write(fileContent);
os.flush();
} finally {
os.close();
}
}
public static byte[] generateJar(final Class... classes) throws IOException {
return generateJar(getResources(classes));
}
public static Map getResources(final Class... classes) throws IOException {
if (classes == null || classes.length == 0) {
final String message = "No classes available";
throw new IOException(message);
}
final Map resources = new HashMap<>();
for (final Class clazz : classes) {
resources.put(clazz.getName().replace(".", "/") + ".class", ClassDataUtil.getClassData(clazz));
for (final Class internalClass : clazz.getDeclaredClasses()) {
resources.put(internalClass.getName().replace(".", "/") + ".class",
ClassDataUtil.getClassData(internalClass));
}
}
return resources;
}
public static byte[] generateJar(final Map resources) throws IOException {
if (resources == null || resources.size() == 0) {
final String message = "No resources available";
throw new IOException(message);
}
ByteArrayOutputStream baos = null;
JarOutputStream jarOutStream = null;
try {
baos = new ByteArrayOutputStream();
jarOutStream = new JarOutputStream(new BufferedOutputStream(baos));
for (final Map.Entry resource : resources.entrySet()) {
jarOutStream.putNextEntry(new JarEntry(resource.getKey()));
jarOutStream.write(resource.getValue());
}
jarOutStream.flush();
baos.flush();
} finally {
if (jarOutStream != null) {
jarOutStream.close();
}
if (baos != null) {
baos.close();
}
}
return baos.toByteArray();
}
public static byte[] generateZip(final Map resources) throws IOException {
if (resources == null || resources.size() == 0) {
final String message = "No resources available";
throw new IOException(message);
}
ByteArrayOutputStream baos = null;
ZipOutputStream zipOutStream = null;
BufferedOutputStream bufferedOutputStream = null;
try {
baos = new ByteArrayOutputStream();
bufferedOutputStream = new BufferedOutputStream(baos);
zipOutStream = new ZipOutputStream(bufferedOutputStream);
for (final Map.Entry resource : resources.entrySet()) {
zipOutStream.putNextEntry(new ZipEntry(resource.getKey()));
zipOutStream.write(resource.getValue());
}
zipOutStream.flush();
baos.flush();
} finally {
if (zipOutStream != null) {
zipOutStream.close();
}
if (baos != null) {
baos.close();
}
if (bufferedOutputStream != null) {
bufferedOutputStream.close();
}
}
return baos.toByteArray();
}
/**
* Return the whole underlying stream content into a single String.
* Warning: the whole content of stream will be kept in memory!! Use with
* care!
*
* @param in
* the stream to read
* @return the whole content of the stream in a single String.
* @throws IOException
* if an I/O exception occurs
*/
public static byte[] getAllContentFrom(final InputStream in) throws IOException {
if (in == null) {
throw new IOException("The InputStream is null!");
}
final byte[] buffer = new byte[BUFFER_SIZE];
final byte[] resultArray;
BufferedInputStream bis = null;
ByteArrayOutputStream result = null;
try {
bis = new BufferedInputStream(in);
result = new ByteArrayOutputStream();
int amountRead;
while ((amountRead = bis.read(buffer)) > 0) {
result.write(buffer, 0, amountRead);
}
resultArray = result.toByteArray();
result.flush();
} finally {
if (bis != null) {
bis.close();
}
if (result != null) {
result.close();
}
}
return resultArray;
}
/**
* Read the contents from the given FileInputStream. Return the result as a String.
*
* @param inputStream
* the stream to read from
* @return the content read from the inputStream, as a String
*/
public static String read(final InputStream inputStream) {
final Scanner scanner = new Scanner(inputStream, FILE_ENCODING);
final StringBuilder text = new StringBuilder();
try {
boolean isFirst = true;
while (scanner.hasNextLine()) {
if (isFirst) {
text.append(scanner.nextLine());
} else {
text.append(LINE_SEPARATOR + scanner.nextLine());
}
isFirst = false;
}
} finally {
scanner.close();
}
return text.toString();
}
/**
* Read the contents of the given file.
*
* @param file
*/
public static String read(final File file) throws IOException {
final FileInputStream inputStream = new FileInputStream(file);
try {
return read(inputStream);
} finally {
inputStream.close();
}
}
/**
* Equivalent to {@link #getAllContentFrom(InputStream) getAllContentFrom(new
* FileInputStream(file))};
*
* @param file
* the file to read
* @return the whole content of the file in a single String.
* @throws IOException
* If an I/O exception occurs
*/
public static byte[] getAllContentFrom(final File file) throws IOException {
InputStream in = null;
try {
in = new FileInputStream(file);
return getAllContentFrom(in);
} finally {
if (in != null) {
in.close();
}
}
}
/**
* Return the whole underlying stream content into a single String.
* Warning: the whole content of stream will be kept in memory!! Use with
* care!
*
* @param url
* the URL to read
* @return the whole content of the stream in a single String.
* @throws IOException
* if an I/O exception occurs
*/
public static byte[] getAllContentFrom(final URL url) throws IOException {
final InputStream in = url.openStream();
try {
return getAllContentFrom(in);
} finally {
in.close();
}
}
public static boolean deleteDir(final File dir) throws IOException {
return deleteDir(dir, 1, 0);
}
public static boolean deleteDir(final File dir, final int attempts, final long sleepTime) throws IOException {
boolean result = true;
if (!dir.exists()) {
return true; //already deleted
}
if (!dir.isDirectory()) {
throw new IOException("Unable to delete directory: " + dir + ", it is not a directory");
}
for (final File file : dir.listFiles()) {
if (file.isDirectory()) {
result &= deleteDir(file, attempts, sleepTime);
} else {
result &= deleteFile(file, attempts, sleepTime);
}
}
return result && deleteFile(dir, attempts, sleepTime);
}
public static boolean deleteFile(final File file, final int attempts, final long sleepTime) {
int retries = attempts;
while (retries > 0) {
if (file.delete()) {
break;
}
retries--;
try {
Thread.sleep(sleepTime);
} catch (final InterruptedException e) {
}
}
return retries > 0;
}
public static void writeFile(final File file, final String fileContent) throws IOException {
if (file == null) {
throw new IllegalArgumentException("File should not be null.");
}
if (!file.exists()) {
throw new FileNotFoundException("File does not exist: " + file);
}
if (!file.isFile()) {
throw new IllegalArgumentException("Should not be a directory: " + file);
}
if (!file.canWrite()) {
throw new IllegalArgumentException("File cannot be written: " + file);
}
// use buffering
final Writer output = new BufferedWriter(new FileWriter(file));
try {
output.write(fileContent);
} finally {
output.close();
}
}
public static byte[] zip(final Map files) throws IOException {
final ByteArrayOutputStream baos = new ByteArrayOutputStream();
final ZipOutputStream zos = new ZipOutputStream(baos);
try {
for (final Entry file : files.entrySet()) {
zos.putNextEntry(new ZipEntry(file.getKey()));
zos.write(file.getValue());
zos.flush();
zos.closeEntry();
}
} finally {
zos.close();
baos.close();
}
return baos.toByteArray();
}
public static byte[] zip(final Pair... files) throws IOException {
final ByteArrayOutputStream baos = new ByteArrayOutputStream();
final ZipOutputStream zos = new ZipOutputStream(baos);
try {
for (final Entry file : files) {
zos.putNextEntry(new ZipEntry(file.getKey()));
zos.write(file.getValue());
zos.flush();
zos.closeEntry();
}
} finally {
zos.close();
baos.close();
}
return baos.toByteArray();
}
public static final Map unzip(final byte[] zipFile) throws IOException {
final ByteArrayInputStream bais = new ByteArrayInputStream(zipFile);
final ZipInputStream zipInputstream = new ZipInputStream(bais);
ZipEntry zipEntry = null;
final Map files = new HashMap<>();
try {
while ((zipEntry = zipInputstream.getNextEntry()) != null) {
final ByteArrayOutputStream byteArrayOutputStream = new ByteArrayOutputStream();
int bytesRead;
final byte[] buffer = new byte[BUFFER_SIZE];
while ((bytesRead = zipInputstream.read(buffer)) > -1) {
byteArrayOutputStream.write(buffer, 0, bytesRead);
}
files.put(zipEntry.getName(), byteArrayOutputStream.toByteArray());
}
} finally {
zipInputstream.close();
}
return files;
}
private static void writeZipInputToFile(final ZipInputStream zipInputstream, final File outputFile)
throws FileNotFoundException, IOException {
// The input is a file. An FileOutputStream is created to write the content of the new file.
mkdirs(outputFile.getParentFile());
try {
final FileOutputStream fileOutputStream = new FileOutputStream(outputFile);
try {
// The contents of the new file, that is read from the ZipInputStream using a buffer (byte []), is written.
int bytesRead;
final byte[] buffer = new byte[BUFFER_SIZE];
while ((bytesRead = zipInputstream.read(buffer)) > -1) {
fileOutputStream.write(buffer, 0, bytesRead);
}
} finally {
fileOutputStream.close();
}
} catch (final IOException ioe) {
// In case of error, the file is deleted
outputFile.delete();
throw ioe;
}
}
private static boolean mkdirs(final File file) {
if (!file.exists()) {
return file.mkdirs();
}
return true;
}
public static byte[] getZipEntryContent(final String entryName, final InputStream inputStream) throws IOException {
final ZipInputStream zipInputstream = new ZipInputStream(inputStream);
ZipEntry zipEntry = null;
try {
while ((zipEntry = zipInputstream.getNextEntry()) != null) {
if (!entryName.equals(zipEntry.getName())) {
continue;
}
return getBytes(zipInputstream);
}
} finally {
zipInputstream.close();
}
throw new IOException("Entry " + entryName + " does not exists in the zip file");
}
public static byte[] getBytes(ZipInputStream zipInputstream) throws IOException {
final ByteArrayOutputStream byteArrayOutputStream = new ByteArrayOutputStream();
try {
int bytesRead;
final byte[] buffer = new byte[BUFFER_SIZE];
while ((bytesRead = zipInputstream.read(buffer)) > -1) {
byteArrayOutputStream.write(buffer, 0, bytesRead);
}
return byteArrayOutputStream.toByteArray();
} finally {
byteArrayOutputStream.close();
}
}
public static byte[] getZipEntryContent(final String entryName, final byte[] zipFile) throws IOException {
return getZipEntryContent(entryName, new ByteArrayInputStream(zipFile));
}
public static byte[] toByteArray(final Document document) throws IOException, TransformerException {
if (document == null) {
throw new IllegalArgumentException("Document should not be null.");
}
final TransformerFactory transformerFactory = TransformerFactory.newInstance();
try {
transformerFactory.setAttribute(XMLConstants.ACCESS_EXTERNAL_DTD, ""); // security-compliant
transformerFactory.setAttribute(XMLConstants.ACCESS_EXTERNAL_STYLESHEET, ""); // security-compliant
} catch (IllegalArgumentException e) {
//ignored, if not supported by the implementation
}
final Transformer tf = transformerFactory.newTransformer();
tf.setOutputProperty(OutputKeys.ENCODING, FILE_ENCODING);
tf.setOutputProperty(OutputKeys.INDENT, "yes");
try (ByteArrayOutputStream out = new ByteArrayOutputStream()) {
tf.transform(new DOMSource(document), new StreamResult(out));
return out.toByteArray();
}
}
public static byte[] addJarEntry(final byte[] jarToUpdate, final String entryName, final byte[] entryContent)
throws IOException {
final byte[] buffer = new byte[4096];
try (ByteArrayInputStream bais = new ByteArrayInputStream(jarToUpdate);
JarInputStream jis = new JarInputStream(bais); ByteArrayOutputStream out = new ByteArrayOutputStream();
JarOutputStream jos = new JarOutputStream(out)) {
JarEntry inEntry;
while ((inEntry = (JarEntry) jis.getNextEntry()) != null) {
if (!inEntry.getName().equals(entryName)) {
jos.putNextEntry(new JarEntry(inEntry));
} else {
throw new IllegalArgumentException("Jar entry " + entryName + " already exists in jar to update");
}
int len;
while ((len = jis.read(buffer)) > 0) {
jos.write(buffer, 0, len);
}
jos.flush();
}
final JarEntry entry = new JarEntry(entryName);
jos.putNextEntry(entry);
jos.write(entryContent);
jos.closeEntry();
jos.finish();
out.flush();
return out.toByteArray();
}
}
public static byte[] getPropertyAsString(final Properties prop, final String comment) throws IOException {
final ByteArrayOutputStream out = new ByteArrayOutputStream();
prop.store(out, comment);
return out.toByteArray();
}
public static String readResource(String fileName) throws IOException {
final String xmlContent;
final InputStream inputStream = Thread.currentThread().getContextClassLoader().getResourceAsStream(fileName);
if (inputStream == null) {
return null;
}
try {
xmlContent = read(inputStream);
} finally {
inputStream.close();
}
return xmlContent;
}
public static String md5(byte[] content) throws NoSuchAlgorithmException {
MessageDigest md5 = MessageDigest.getInstance("MD5");
return new BigInteger(1, md5.digest(content)).toString(16);
}
public static void writeMD5(File file, byte[] bytes) throws NoSuchAlgorithmException, IOException {
write(file, md5(bytes).getBytes());
}
public static boolean checkMD5(File md5File, byte[] contentToCheck) throws NoSuchAlgorithmException {
if (!md5File.exists()) {
return false;
}
try {
return read(md5File).equals(md5(contentToCheck));
} catch (IOException e) {
return false;
}
}
public static void updatePropertyValue(File propertiesFile, final Map pairs) throws IOException {
final BufferedReader br = new BufferedReader(new FileReader(propertiesFile));
try {
StringBuilder sb = new StringBuilder();
String line = br.readLine();
while (line != null) {
String lineToWrite = line;
if (!line.startsWith("#")) {
//it is not a comment
final int splitCharIndex = line.indexOf("=");
if (splitCharIndex >= 0) {
final String key = line.substring(0, splitCharIndex);
//this is a key-value pair
if (pairs.containsKey(key.trim())) {
String value = pairs.get(key.trim());
value = value.replace("\\", "\\\\");
lineToWrite = key + "=" + value;
}
}
}
sb.append(lineToWrite);
sb.append(System.lineSeparator());
line = br.readLine();
}
IOUtil.writeFile(propertiesFile, sb.toString());
} finally {
if (br != null) {
br.close();
}
}
}
public static String getContentTypeForIcon(String iconFilename) {
String contentType = MIMETYPES_FILE_TYPE_MAP.getContentType(iconFilename);
if (!contentType.startsWith("image")) {
throw new IllegalArgumentException("An icon can't have mimetype " + contentType);
}
return contentType;
}
/**
* return the content of the file from the classpath, the file must be at the root of the classpath
*
* @param fileName name of the file
* @return the optional, or empty if there is no file with that name
* @throws IOException when we are unable to read the file from the classpath
*/
public static Optional getFileContent(final String fileName) throws IOException {
try (final InputStream inputStream = Thread.currentThread().getContextClassLoader()
.getResourceAsStream(fileName)) {
if (inputStream == null) {
return Optional.empty();
}
return Optional.of(getAllContentFrom(inputStream));
}
}
// Copied from org.bonitasoft.engine.io.IOUtil, as it is used by client applications (bonita-web-sp)
public static File createTempDirectory(final URI directoryPath) {
final File tmpDir = new File(directoryPath);
tmpDir.setReadable(true);
tmpDir.setWritable(true);
mkdirs(tmpDir);
FileUtils.isSymlink(tmpDir);
try {
Runtime.getRuntime().addShutdownHook(new Thread(() -> {
try {
final boolean deleted = deleteDir(tmpDir);
if (!deleted) {
System.err.println(
"Unable to delete directory: " + tmpDir + ". Trying with an alternative force delete.");
FileUtils.forceDelete(tmpDir);
}
} catch (final IOException e) {
throw new RuntimeException(e);
}
}));
} catch (IllegalStateException ignored) {
// happen in case of hook already registered and when shutting down
}
return tmpDir;
}
}
