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The Bouncy Castle Crypto package is a Java implementation of cryptographic algorithms. This jar contains JCE provider and lightweight API for the Bouncy Castle Cryptography APIs for JDK 1.5 and up.
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package org.bouncycastle.pqc.math.ntru.polynomial;

import java.math.BigDecimal;
import java.math.BigInteger;
import java.util.ArrayList;
import java.util.Collections;
import java.util.List;

import org.bouncycastle.crypto.CryptoServicesRegistrar;
import org.bouncycastle.util.Arrays;

/**
 * A polynomial with {@link BigInteger} coefficients.

 * Some methods (like add) change the polynomial, others (like mult) do
 * not but return the result as a new polynomial.
 */
public class BigIntPolynomial
{
    private final static double LOG_10_2 = Math.log10(2);

    BigInteger[] coeffs;

    /**
     * Constructs a new polynomial with N coefficients initialized to 0.
     *
     * @param N the number of coefficients
     */
    BigIntPolynomial(int N)
    {
        coeffs = new BigInteger[N];
        for (int i = 0; i < N; i++)
        {
            coeffs[i] = Constants.BIGINT_ZERO;
        }
    }

    /**
     * Constructs a new polynomial with a given set of coefficients.
     *
     * @param coeffs the coefficients
     */
    BigIntPolynomial(BigInteger[] coeffs)
    {
        this.coeffs = coeffs;
    }

    /**
     * Constructs a BigIntPolynomial from a IntegerPolynomial. The two polynomials are
     * independent of each other.
     *
     * @param p the original polynomial
     */
    public BigIntPolynomial(IntegerPolynomial p)
    {
        coeffs = new BigInteger[p.coeffs.length];
        for (int i = 0; i < coeffs.length; i++)
        {
            coeffs[i] = BigInteger.valueOf(p.coeffs[i]);
        }
    }

    /**
     * Generates a random polynomial with numOnes coefficients equal to 1,
     * numNegOnes coefficients equal to -1, and the rest equal to 0.
     *
     * @param N          number of coefficients
     * @param numOnes    number of 1's
     * @param numNegOnes number of -1's
     * @return a random polynomial.
     */
    static BigIntPolynomial generateRandomSmall(int N, int numOnes, int numNegOnes)
    {
        List coeffs = new ArrayList();
        for (int i = 0; i < numOnes; i++)
        {
            coeffs.add(Constants.BIGINT_ONE);
        }
        for (int i = 0; i < numNegOnes; i++)
        {
            coeffs.add(BigInteger.valueOf(-1));
        }
        while (coeffs.size() < N)
        {
            coeffs.add(Constants.BIGINT_ZERO);
        }
        Collections.shuffle(coeffs, CryptoServicesRegistrar.getSecureRandom());

        BigIntPolynomial poly = new BigIntPolynomial(N);
        for (int i = 0; i < coeffs.size(); i++)
        {
            poly.coeffs[i] = (BigInteger)coeffs.get(i);
        }
        return poly;
    }

    /**
     * Multiplies the polynomial by another, taking the indices mod N. Does not
     * change this polynomial but returns the result as a new polynomial.

     * Both polynomials must have the same number of coefficients.
     *
     * @param poly2 the polynomial to multiply by
     * @return a new polynomial
     */
    public BigIntPolynomial mult(BigIntPolynomial poly2)
    {
        int N = coeffs.length;
        if (poly2.coeffs.length != N)
        {
            throw new IllegalArgumentException("Number of coefficients must be the same");
        }

        BigIntPolynomial c = multRecursive(poly2);

        if (c.coeffs.length > N)
        {
            for (int k = N; k < c.coeffs.length; k++)
            {
                c.coeffs[k - N] = c.coeffs[k - N].add(c.coeffs[k]);
            }
            c.coeffs = Arrays.copyOf(c.coeffs, N);
        }
        return c;
    }

    /**
     * Karazuba multiplication
     */
    private BigIntPolynomial multRecursive(BigIntPolynomial poly2)
    {
        BigInteger[] a = coeffs;
        BigInteger[] b = poly2.coeffs;

        int n = poly2.coeffs.length;
        if (n <= 1)
        {
            BigInteger[] c = Arrays.clone(coeffs);
            for (int i = 0; i < coeffs.length; i++)
            {
                c[i] = c[i].multiply(poly2.coeffs[0]);
            }
            return new BigIntPolynomial(c);
        }
        else
        {
            int n1 = n / 2;

            BigIntPolynomial a1 = new BigIntPolynomial(Arrays.copyOf(a, n1));
            BigIntPolynomial a2 = new BigIntPolynomial(Arrays.copyOfRange(a, n1, n));
            BigIntPolynomial b1 = new BigIntPolynomial(Arrays.copyOf(b, n1));
            BigIntPolynomial b2 = new BigIntPolynomial(Arrays.copyOfRange(b, n1, n));

            BigIntPolynomial A = (BigIntPolynomial)a1.clone();
            A.add(a2);
            BigIntPolynomial B = (BigIntPolynomial)b1.clone();
            B.add(b2);

            BigIntPolynomial c1 = a1.multRecursive(b1);
            BigIntPolynomial c2 = a2.multRecursive(b2);
            BigIntPolynomial c3 = A.multRecursive(B);
            c3.sub(c1);
            c3.sub(c2);

            BigIntPolynomial c = new BigIntPolynomial(2 * n - 1);
            for (int i = 0; i < c1.coeffs.length; i++)
            {
                c.coeffs[i] = c1.coeffs[i];
            }
            for (int i = 0; i < c3.coeffs.length; i++)
            {
                c.coeffs[n1 + i] = c.coeffs[n1 + i].add(c3.coeffs[i]);
            }
            for (int i = 0; i < c2.coeffs.length; i++)
            {
                c.coeffs[2 * n1 + i] = c.coeffs[2 * n1 + i].add(c2.coeffs[i]);
            }
            return c;
        }
    }

    /**
     * Adds another polynomial which can have a different number of coefficients,
     * and takes the coefficient values mod modulus.
     *
     * @param b another polynomial
     */
    void add(BigIntPolynomial b, BigInteger modulus)
    {
        add(b);
        mod(modulus);
    }

    /**
     * Adds another polynomial which can have a different number of coefficients.
     *
     * @param b another polynomial
     */
    public void add(BigIntPolynomial b)
    {
        if (b.coeffs.length > coeffs.length)
        {
            int N = coeffs.length;
            coeffs = Arrays.copyOf(coeffs, b.coeffs.length);
            for (int i = N; i < coeffs.length; i++)
            {
                coeffs[i] = Constants.BIGINT_ZERO;
            }
        }
        for (int i = 0; i < b.coeffs.length; i++)
        {
            coeffs[i] = coeffs[i].add(b.coeffs[i]);
        }
    }

    /**
     * Subtracts another polynomial which can have a different number of coefficients.
     *
     * @param b another polynomial
     */
    public void sub(BigIntPolynomial b)
    {
        if (b.coeffs.length > coeffs.length)
        {
            int N = coeffs.length;
            coeffs = Arrays.copyOf(coeffs, b.coeffs.length);
            for (int i = N; i < coeffs.length; i++)
            {
                coeffs[i] = Constants.BIGINT_ZERO;
            }
        }
        for (int i = 0; i < b.coeffs.length; i++)
        {
            coeffs[i] = coeffs[i].subtract(b.coeffs[i]);
        }
    }

    /**
     * Multiplies each coefficient by a BigInteger. Does not return a new polynomial but modifies this polynomial.
     *
     * @param factor
     */
    public void mult(BigInteger factor)
    {
        for (int i = 0; i < coeffs.length; i++)
        {
            coeffs[i] = coeffs[i].multiply(factor);
        }
    }

    /**
     * Multiplies each coefficient by a int. Does not return a new polynomial but modifies this polynomial.
     *
     * @param factor
     */
    void mult(int factor)
    {
        mult(BigInteger.valueOf(factor));
    }

    /**
     * Divides each coefficient by a BigInteger and rounds the result to the nearest whole number.

     * Does not return a new polynomial but modifies this polynomial.
     *
     * @param divisor the number to divide by
     */
    public void div(BigInteger divisor)
    {
        BigInteger d = divisor.add(Constants.BIGINT_ONE).divide(BigInteger.valueOf(2));
        for (int i = 0; i < coeffs.length; i++)
        {
            coeffs[i] = coeffs[i].compareTo(Constants.BIGINT_ZERO) > 0 ? coeffs[i].add(d) : coeffs[i].add(d.negate());
            coeffs[i] = coeffs[i].divide(divisor);
        }
    }

    /**
     * Divides each coefficient by a BigDecimal and rounds the result to decimalPlaces places.
     *
     * @param divisor       the number to divide by
     * @param decimalPlaces the number of fractional digits to round the result to
     * @return a new BigDecimalPolynomial
     */
    public BigDecimalPolynomial div(BigDecimal divisor, int decimalPlaces)
    {
        BigInteger max = maxCoeffAbs();
        int coeffLength = (int)(max.bitLength() * LOG_10_2) + 1;
        // factor = 1/divisor
        BigDecimal factor = Constants.BIGDEC_ONE.divide(divisor, coeffLength + decimalPlaces + 1, BigDecimal.ROUND_HALF_EVEN);

        // multiply each coefficient by factor
        BigDecimalPolynomial p = new BigDecimalPolynomial(coeffs.length);
        for (int i = 0; i < coeffs.length; i++)
        // multiply, then truncate after decimalPlaces so subsequent operations aren't slowed down
        {
            p.coeffs[i] = new BigDecimal(coeffs[i]).multiply(factor).setScale(decimalPlaces, BigDecimal.ROUND_HALF_EVEN);
        }

        return p;
    }

    /**
     * Returns the base10 length of the largest coefficient.
     *
     * @return length of the longest coefficient
     */
    public int getMaxCoeffLength()
    {
        return (int)(maxCoeffAbs().bitLength() * LOG_10_2) + 1;
    }

    private BigInteger maxCoeffAbs()
    {
        BigInteger max = coeffs[0].abs();
        for (int i = 1; i < coeffs.length; i++)
        {
            BigInteger coeff = coeffs[i].abs();
            if (coeff.compareTo(max) > 0)
            {
                max = coeff;
            }
        }
        return max;
    }

    /**
     * Takes each coefficient modulo a number.
     *
     * @param modulus
     */
    public void mod(BigInteger modulus)
    {
        for (int i = 0; i < coeffs.length; i++)
        {
            coeffs[i] = coeffs[i].mod(modulus);
        }
    }

    /**
     * Returns the sum of all coefficients, i.e. evaluates the polynomial at 0.
     *
     * @return the sum of all coefficients
     */
    BigInteger sumCoeffs()
    {
        BigInteger sum = Constants.BIGINT_ZERO;
        for (int i = 0; i < coeffs.length; i++)
        {
            sum = sum.add(coeffs[i]);
        }
        return sum;
    }

    /**
     * Makes a copy of the polynomial that is independent of the original.
     */
    public Object clone()
    {
        return new BigIntPolynomial(coeffs.clone());
    }

    public int hashCode()
    {
        final int prime = 31;
        int result = 1;
        result = prime * result + Arrays.hashCode(coeffs);
        return result;
    }

    public boolean equals(Object obj)
    {
        if (this == obj)
        {
            return true;
        }
        if (obj == null)
        {
            return false;
        }
        if (getClass() != obj.getClass())
        {
            return false;
        }
        BigIntPolynomial other = (BigIntPolynomial)obj;
        if (!Arrays.areEqual(coeffs, other.coeffs))
        {
            return false;
        }
        return true;
    }

    public BigInteger[] getCoeffs()
    {
        return Arrays.clone(coeffs);
    }
}