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The Bouncy Castle Crypto package is a Java implementation of cryptographic algorithms. This jar contains JCE provider and lightweight API for the Bouncy Castle Cryptography APIs for JDK 1.5 to JDK 1.8.

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package org.bouncycastle.pqc.crypto.hqc;

import org.bouncycastle.util.Arrays;

class ReedMuller
{
    static class Codeword
    {
        int[] type32;
        int[] type8;

        public Codeword()
        {
            this.type32 = new int[4];
            this.type8 = new int[16];
        }
    }

    static void encodeSub(Codeword codeword, int m)
    {

        int word1;
        word1 = Bit0Mask(m >> 7);

        word1 ^= Bit0Mask(m >> 0) & 0xaaaaaaaa;
        word1 ^= Bit0Mask(m >> 1) & 0xcccccccc;
        word1 ^= Bit0Mask(m >> 2) & 0xf0f0f0f0;
        word1 ^= Bit0Mask(m >> 3) & 0xff00ff00;
        word1 ^= Bit0Mask(m >> 4) & 0xffff0000;

        codeword.type32[0] = word1;

        word1 ^= Bit0Mask(m >> 5);
        codeword.type32[1] = word1;

        word1 ^= Bit0Mask(m >> 6);
        codeword.type32[3] = word1;

        word1 ^= Bit0Mask(m >> 5);
        codeword.type32[2] = word1;
    }

    private static void hadamardTransform(int[] srcCode, int[] desCode)
    {
        int[] srcCodeCopy = Arrays.clone(srcCode);
        int[] desCodeCopy = Arrays.clone(desCode);

        for (int i = 0; i < 7; i++)
        {
            for (int j = 0; j < 64; j++)
            {
                desCodeCopy[j] = srcCodeCopy[2 * j] + srcCodeCopy[2 * j + 1];
                desCodeCopy[j + 64] = srcCodeCopy[2 * j] - srcCodeCopy[2 * j + 1];
            }

            //swap srcCode and desCode
            int[] tmp = srcCodeCopy; srcCodeCopy = desCodeCopy; desCodeCopy = tmp;
        }

        // swap
        System.arraycopy(desCodeCopy, 0, srcCode, 0, srcCode.length);
        System.arraycopy(srcCodeCopy, 0, desCode, 0, desCode.length);
    }


    private static void expandThenSum(int[] desCode, Codeword[] srcCode, int off, int mulParam)
    {
        for (int i = 0; i < 4; i++)
        {
            for (int j = 0; j < 32; j++)
            {
                long ii = srcCode[0 + off].type32[i] >> j & 1;
                desCode[i * 32 + j] = srcCode[0 + off].type32[i] >> j & 1;
            }
        }

        for (int i = 1; i < mulParam; i++)
        {
            for (int j = 0; j < 4; j++)
            {
                for (int k = 0; k < 32; k++)
                {
                    desCode[j * 32 + k] += srcCode[i + off].type32[j] >> k & 1;

                }
            }
        }

    }

    private static int findPeaks(int[] input)
    {
        int peakAbsVal = 0;
        int peakVal = 0;
        int peakPos = 0;

        for (int i = 0; i < 128; i++)
        {
            int t = input[i];
            int posMask = t > 0 ? -1 : 0;
            int abs = (posMask & t) | (~posMask & -t);

            peakVal = abs > peakAbsVal ? t : peakVal;
            peakPos = abs > peakAbsVal ? i : peakPos;
            peakAbsVal = abs > peakAbsVal ? abs : peakAbsVal;
        }
        int tmp = peakVal > 0 ? 1 : 0;
        peakPos |= 128 * tmp;
        return peakPos;
    }


    private static int Bit0Mask(int b)
    {
        return (-(b & 1)) & 0xffffffff;
    }

    public static void encode(long[] codeword, byte[] m, int n1, int mulParam)
    {
        byte[] mBytes = Arrays.clone(m);

        Codeword[] codewordCopy = new Codeword[n1 * mulParam];
        for (int i = 0; i < codewordCopy.length; i++)
        {
            codewordCopy[i] = new Codeword();
        }

        for (int i = 0; i < n1; i++)
        {
            int pos = i * mulParam;
            encodeSub(codewordCopy[pos], mBytes[i]);

            for (int j = 1; j < mulParam; j++)
            {
                codewordCopy[pos + j] = codewordCopy[pos];
            }
        }

        int[] cwd64 = new int[codewordCopy.length * 4];
        int off = 0;
        for (int i = 0; i < codewordCopy.length; i++)
        {
            System.arraycopy(codewordCopy[i].type32, 0, cwd64, off, codewordCopy[i].type32.length);
            off += 4;
        }

        Utils.fromByte32ArrayToLongArray(codeword, cwd64);
    }


    public static void decode(byte[] m, long[] codeword, int n1, int mulParam)
    {
        byte[] mBytes = Arrays.clone(m);

        Codeword[] codewordCopy = new Codeword[codeword.length / 2]; // because each codewordCopy has a 32 bit array size 4
        int[] byteCodeWords = new int[codeword.length * 2];
        Utils.fromLongArrayToByte32Array(byteCodeWords, codeword);

        for (int i = 0; i < codewordCopy.length; i++)
        {
            codewordCopy[i] = new Codeword();
            for (int j = 0; j < 4; j++)
            {
                codewordCopy[i].type32[j] = byteCodeWords[i * 4 + j];
            }
        }

        int[] expandedCodeword = new int[128];


        for (int i = 0; i < n1; i++)
        {
            expandThenSum(expandedCodeword, codewordCopy, i * mulParam, mulParam);


            int[] tmp = new int[128];
            hadamardTransform(expandedCodeword, tmp);

            tmp[0] -= 64 * mulParam;
            mBytes[i] = (byte)findPeaks(tmp);
        }

        int[] cwd64 = new int[codewordCopy.length * 4];
        int off = 0;
        for (int i = 0; i < codewordCopy.length; i++)
        {
            System.arraycopy(codewordCopy[i].type32, 0, cwd64, off, codewordCopy[i].type32.length);
            off += 4;
        }
        Utils.fromByte32ArrayToLongArray(codeword, cwd64);
        System.arraycopy(mBytes, 0, m, 0, m.length);
    }

}




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