org.bridgedb.uri.loader.SetupWithTestData Maven / Gradle / Ivy

Go to download

Show more of this group Show more artifacts with this name
Show all versions of org.bridgedb.uri.loader Show documentation

There is a newer version: 3.1.3

Show newest version

/*
 * To change this template, choose Tools | Templates
 * and open the template in the editor.
 */
package org.bridgedb.uri.loader;

import java.io.File;

import org.bridgedb.sql.SQLUriMapper;
import org.bridgedb.uri.lens.Lens;
import org.bridgedb.utils.BridgeDBException;
import org.bridgedb.utils.Reporter;
import org.eclipse.rdf4j.model.IRI;
import org.eclipse.rdf4j.model.impl.SimpleValueFactory;

/**
 *
 * @author Christian
 */
public class SetupWithTestData {
    
    static final String MAIN_JUSTIFCATION = "http://semanticscience.org/resource/CHEMINF_000059";
    static final String LENS_JUSTIFCATION = "http://www.bridgedb.org/test#testJustification";
    static final IRI linkPredicate = SimpleValueFactory.getInstance().createIRI("http://www.w3.org/2004/02/skos/core#exactMatch");
    private SQLUriMapper uriListener;
    private LinksetListener instance;

    public SetupWithTestData() throws BridgeDBException {
        uriListener = SQLUriMapper.createNew();
        instance = new LinksetListener(uriListener);
    }
    
    private void loadFile(String fileName, String justification) throws BridgeDBException{
        Reporter.println("parsing " + fileName);
        File file = new File(fileName);
        int mappingSetId = instance.parse(file, linkPredicate, justification, true);
        Reporter.println("       Loaded as mappingSet " + mappingSetId);
     }
    /**
     * ONLY recommended if using BridgeDB without the OpenPhacts IMS extension.
     * Test of parse method, of class LinksetListener.
     * @param args arguments
     * @throws BridgeDBException exception class
     */
   public static void main(String[] args) throws BridgeDBException {
        Reporter.println("LoadTestData");
        SetupWithTestData loader = new SetupWithTestData();
        
        loader.loadFile("../org.bridgedb.uri.loader/test-data/cw-cs.ttl", Lens.getDefaultJustifictaionString());
        loader.loadFile("../org.bridgedb.uri.loader/test-data/cs-ops.ttl", Lens.getDefaultJustifictaionString());
        loader.loadFile("../org.bridgedb.uri.loader/test-data/ops-ops_lensed.ttl", Lens.getTestJustifictaion());
        loader.loadFile("../org.bridgedb.uri.loader/test-data/cw-cs_lensed.ttl", Lens.getTestJustifictaion());
        loader.loadFile("../org.bridgedb.uri.loader/test-data/cs-ops_lensed.ttl", Lens.getTestJustifictaion());

    }

 }