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gatk from group org.broadinstitute (version 4.1.7.0)

Development on GATK 4

Group: org.broadinstitute Artifact: gatk
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3 downloads
Artifact gatk
Group org.broadinstitute
Version 4.1.7.0
Last update 23. April 2020
Newest version Yes
Organization not specified
URL http://github.com/broadinstitute/gatk
License BSD 3-Clause
Dependencies amount 49
Dependencies barclay, owner, picard, genomicsdb, opencsv, guava, htsjdk, google-cloud-nio, gov.nist.math.jama, gcs-connector, log4j-api, log4j-core, log4j-jcl, commons-lang3, commons-math3, commons-collections4, commons-vfs2, commons-configuration2, commons-beanutils, commons-io, reflections, fastutil, hdf5-java-bindings, gatk-native-bindings, ojalgo, ojalgo-commons-math3, spark-mllib_2.11, paranamer, bdg-formats, adam-core-spark2_2.11, jgrapht-core, disq, hadoop-client, jsr203hadoop, kryo-serializers, netlib-native_ref-osx-x86_64, netlib-native_ref-linux-x86_64, netlib-native_system-linux-x86_64, netlib-native_system-osx-x86_64, kryo, reflectasm, gkl, gatk-bwamem-jni, gatk-fermilite-jni, http-nio, sqlite-jdbc, xgboost-predictor, natural-comparator, objenesis,
There are maybe transitive dependencies!

gatk-test-utils from group org.broadinstitute (version 4.1.7.0)

Development on GATK 4

Group: org.broadinstitute Artifact: gatk-test-utils
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0 downloads
Artifact gatk-test-utils
Group org.broadinstitute
Version 4.1.7.0
Last update 23. April 2020
Newest version Yes
Organization not specified
URL http://github.com/broadinstitute/gatk
License BSD 3-Clause
Dependencies amount 49
Dependencies barclay, owner, picard, genomicsdb, opencsv, guava, htsjdk, google-cloud-nio, gov.nist.math.jama, gcs-connector, log4j-api, log4j-core, log4j-jcl, commons-lang3, commons-math3, commons-collections4, commons-vfs2, commons-configuration2, commons-beanutils, commons-io, reflections, fastutil, hdf5-java-bindings, gatk-native-bindings, ojalgo, ojalgo-commons-math3, spark-mllib_2.11, paranamer, bdg-formats, adam-core-spark2_2.11, jgrapht-core, disq, hadoop-client, jsr203hadoop, kryo-serializers, netlib-native_ref-osx-x86_64, netlib-native_ref-linux-x86_64, netlib-native_system-linux-x86_64, netlib-native_system-osx-x86_64, kryo, reflectasm, gkl, gatk-bwamem-jni, gatk-fermilite-jni, http-nio, sqlite-jdbc, xgboost-predictor, natural-comparator, objenesis,
There are maybe transitive dependencies!

http-nio from group org.broadinstitute (version 0.1.0-rc1)

HTTP/S FileSystem provider for Java NIO.2

Group: org.broadinstitute Artifact: http-nio
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0 downloads
Artifact http-nio
Group org.broadinstitute
Version 0.1.0-rc1
Last update 25. March 2020
Newest version Yes
Organization not specified
URL https://github.com/lbergelson/http-nio
License BSD 3-Clause
Dependencies amount 0
Dependencies No dependencies
There are maybe transitive dependencies!

gatk-minimap2-jni from group org.broadinstitute (version 1.0.2)

java bindings for the minimap2 aligner

Group: org.broadinstitute Artifact: gatk-minimap2-jni
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0 downloads
Artifact gatk-minimap2-jni
Group org.broadinstitute
Version 1.0.2
Last update 13. March 2020
Newest version Yes
Organization not specified
URL http://github.com/broadinstitute/gatk-minimap2-jni
License BSD 3-Clause
Dependencies amount 0
Dependencies No dependencies
There are maybe transitive dependencies!

google-cloud-nio-GATK4-custom-patch from group org.broadinstitute (version 0.20.5-alpha-GCS-RETRY-FIX)

FileSystemProvider for Java NIO to access Google Cloud Storage transparently.

Group: org.broadinstitute Artifact: google-cloud-nio-GATK4-custom-patch
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2 downloads
Artifact google-cloud-nio-GATK4-custom-patch
Group org.broadinstitute
Version 0.20.5-alpha-GCS-RETRY-FIX
Last update 10. August 2018
Newest version Yes
Organization Google
URL https://github.com/GoogleCloudPlatform/google-cloud-java/tree/master/google-cloud-contrib/google-cloud-nio
License Google Cloud Software License
Dependencies amount 4
Dependencies google-cloud-storage, guava, jsr305, javax.inject,
There are maybe transitive dependencies!

gatk-bwamem-jni from group org.broadinstitute (version 1.0.5)

java bindings for the bwa-mem assembler

Group: org.broadinstitute Artifact: gatk-bwamem-jni
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0 downloads
Artifact gatk-bwamem-jni
Group org.broadinstitute
Version 1.0.5
Last update 03. May 2018
Newest version Yes
Organization not specified
URL http://github.com/broadinstitute/gatk-bwamem-jni
License BSD 3-Clause
Dependencies amount 0
Dependencies No dependencies
There are maybe transitive dependencies!

gatk-fermilite-jni from group org.broadinstitute (version 1.2.1)

java Bindings for the fermi-lite assembler

Group: org.broadinstitute Artifact: gatk-fermilite-jni
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0 downloads
Artifact gatk-fermilite-jni
Group org.broadinstitute
Version 1.2.1
Last update 18. April 2018
Newest version Yes
Organization not specified
URL http://github.com/broadinstitute/gatk-fermlite-jni
License BSD 3-Clause
Dependencies amount 0
Dependencies No dependencies
There are maybe transitive dependencies!

barclay from group org.broadinstitute (version 2.1.0)

Development on Barclay command line parsing and documentation utilities

Group: org.broadinstitute Artifact: barclay
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3 downloads
Artifact barclay
Group org.broadinstitute
Version 2.1.0
Last update 26. January 2018
Newest version Yes
Organization not specified
URL http://github.com/broadinstitute/barclay
License BSD 3-Clause
Dependencies amount 6
Dependencies jopt-simple, commons-lang3, log4j-api, log4j-core, freemarker, gson,
There are maybe transitive dependencies!

gatk-native-bindings from group org.broadinstitute (version 1.0.0)

Bindings for native libraries to implement to be compatible with GATK4

Group: org.broadinstitute Artifact: gatk-native-bindings
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1 downloads
Artifact gatk-native-bindings
Group org.broadinstitute
Version 1.0.0
Last update 05. January 2018
Newest version Yes
Organization not specified
URL http://github.com/broadinstitute/gatk-native-bindings
License BSD 3-Clause
Dependencies amount 0
Dependencies No dependencies
There are maybe transitive dependencies!

hdf5-java-bindings from group org.broadinstitute (version 1.1.0-hdf5_2.11.0)

HDF5 java bindings

Group: org.broadinstitute Artifact: hdf5-java-bindings
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2 downloads
Artifact hdf5-java-bindings
Group org.broadinstitute
Version 1.1.0-hdf5_2.11.0
Last update 02. September 2016
Newest version Yes
Organization not specified
URL http://github.com/broadinstitute/hdf5-java-bindings
License BSD 3-Clause
Dependencies amount 5
Dependencies gatk-native-bindings, commons-io, slf4j-log4j12, commons-lang3, commons-math3,
There are maybe transitive dependencies!


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