Download framework JAR 1.1 with all dependencies

Files of the artifact framework version 1.1 from the group org.campagnelab.dl.

Artifact framework
Group org.campagnelab.dl
Version 1.1

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Source code of framework version 1.1

META-INF

META-INF.META-INF.MANIFEST.MF

META-INF.maven.org.campagnelab.dl.framework

META-INF.maven.org.campagnelab.dl.framework.META-INF.maven.org.campagnelab.dl.framework.pom.properties

META-INF.maven.org.campagnelab.dl.framework.META-INF.maven.org.campagnelab.dl.framework.pom.xml

org.campagnelab.dl.framework.architecture.graphs

org.campagnelab.dl.framework.architecture.graphs.org.campagnelab.dl.framework.architecture.graphs.ComputationalGraphAssembler

org.campagnelab.dl.framework.architecture.nets

org.campagnelab.dl.framework.architecture.nets.org.campagnelab.dl.framework.architecture.nets.NeuralNetAssembler

org.campagnelab.dl.framework.domains

org.campagnelab.dl.framework.domains.org.campagnelab.dl.framework.domains.DomainDescriptor

org.campagnelab.dl.framework.domains.org.campagnelab.dl.framework.domains.DomainDescriptorLoader

org.campagnelab.dl.framework.domains.prediction

org.campagnelab.dl.framework.domains.prediction.org.campagnelab.dl.framework.domains.prediction.BinaryClassPrediction

org.campagnelab.dl.framework.domains.prediction.org.campagnelab.dl.framework.domains.prediction.Prediction

org.campagnelab.dl.framework.domains.prediction.org.campagnelab.dl.framework.domains.prediction.PredictionInterpreter

org.campagnelab.dl.framework.domains.prediction.org.campagnelab.dl.framework.domains.prediction.RegressionPrediction

org.campagnelab.dl.framework.domains.prediction.org.campagnelab.dl.framework.domains.prediction.TimeSeriesPrediction

org.campagnelab.dl.framework.gpu

org.campagnelab.dl.framework.gpu.org.campagnelab.dl.framework.gpu.InitializeGpu

org.campagnelab.dl.framework.gpu.org.campagnelab.dl.framework.gpu.ParameterPrecision

org.campagnelab.dl.framework.iterators

org.campagnelab.dl.framework.iterators.org.campagnelab.dl.framework.iterators.ConcatFeatureMapper

org.campagnelab.dl.framework.iterators.org.campagnelab.dl.framework.iterators.ConcatLabelMapper

org.campagnelab.dl.framework.iterators.org.campagnelab.dl.framework.iterators.MappedFeaturesIterator

org.campagnelab.dl.framework.iterators.org.campagnelab.dl.framework.iterators.MultiDataSetIteratorAdapter

org.campagnelab.dl.framework.iterators.org.campagnelab.dl.framework.iterators.MultiDatasetMappedFeaturesIterator

org.campagnelab.dl.framework.iterators.cache

org.campagnelab.dl.framework.iterators.cache.org.campagnelab.dl.framework.iterators.cache.CacheHelper

org.campagnelab.dl.framework.iterators.cache.org.campagnelab.dl.framework.iterators.cache.FullyInMemoryCache

org.campagnelab.dl.framework.mappers

org.campagnelab.dl.framework.mappers.org.campagnelab.dl.framework.mappers.ConfigurableFeatureMapper

org.campagnelab.dl.framework.mappers.org.campagnelab.dl.framework.mappers.FeatureCalculator

org.campagnelab.dl.framework.mappers.org.campagnelab.dl.framework.mappers.FeatureMapper

org.campagnelab.dl.framework.mappers.org.campagnelab.dl.framework.mappers.FeatureNameMapper

org.campagnelab.dl.framework.mappers.org.campagnelab.dl.framework.mappers.LabelMapper

org.campagnelab.dl.framework.mappers.org.campagnelab.dl.framework.mappers.MappedDimensions

org.campagnelab.dl.framework.mappers.org.campagnelab.dl.framework.mappers.NoMaskFeatureMapper

org.campagnelab.dl.framework.mappers.org.campagnelab.dl.framework.mappers.OneHotBaseFeatureMapper

org.campagnelab.dl.framework.mappers.org.campagnelab.dl.framework.mappers.OneHotBaseLabelMapper

org.campagnelab.dl.framework.mappers.org.campagnelab.dl.framework.mappers.OneHotHashModuloMapper

org.campagnelab.dl.framework.mappers.org.campagnelab.dl.framework.mappers.RNNFeatureMapper

org.campagnelab.dl.framework.mappers.org.campagnelab.dl.framework.mappers.RNNLabelMapper

org.campagnelab.dl.framework.models

org.campagnelab.dl.framework.models.org.campagnelab.dl.framework.models.ComputationGraphSaver

org.campagnelab.dl.framework.models.org.campagnelab.dl.framework.models.ModelFeatureHelper

org.campagnelab.dl.framework.models.org.campagnelab.dl.framework.models.ModelLoader

org.campagnelab.dl.framework.models.org.campagnelab.dl.framework.models.ModelOutputHelper

org.campagnelab.dl.framework.models.org.campagnelab.dl.framework.models.ModelPropertiesHelper

org.campagnelab.dl.framework.models.org.campagnelab.dl.framework.models.ModelSaver

org.campagnelab.dl.framework.performance

org.campagnelab.dl.framework.performance.org.campagnelab.dl.framework.performance.AUCHelper

org.campagnelab.dl.framework.performance.org.campagnelab.dl.framework.performance.AreaUnderTheROCCurve

org.campagnelab.dl.framework.performance.org.campagnelab.dl.framework.performance.Metric

org.campagnelab.dl.framework.performance.org.campagnelab.dl.framework.performance.PerformanceLogger

org.campagnelab.dl.framework.performance.org.campagnelab.dl.framework.performance.PerformanceMetricDescriptor

org.campagnelab.dl.framework.performance.org.campagnelab.dl.framework.performance.TimeSeriesPerformanceCalculator

org.campagnelab.dl.framework.tools

org.campagnelab.dl.framework.tools.org.campagnelab.dl.framework.tools.MapFeaturesArguments

org.campagnelab.dl.framework.tools.org.campagnelab.dl.framework.tools.MapMultiDatasetFeatures

org.campagnelab.dl.framework.tools.org.campagnelab.dl.framework.tools.MapMultiDatasetFeaturesArguments

org.campagnelab.dl.framework.tools.org.campagnelab.dl.framework.tools.Predict

org.campagnelab.dl.framework.tools.org.campagnelab.dl.framework.tools.PredictArguments

org.campagnelab.dl.framework.tools.org.campagnelab.dl.framework.tools.PredictWithModel

org.campagnelab.dl.framework.tools.org.campagnelab.dl.framework.tools.Show

org.campagnelab.dl.framework.tools.org.campagnelab.dl.framework.tools.ShowArguments

org.campagnelab.dl.framework.tools.org.campagnelab.dl.framework.tools.TrainModel

org.campagnelab.dl.framework.tools.org.campagnelab.dl.framework.tools.TrainingArguments

org.campagnelab.dl.framework.tools.arguments

org.campagnelab.dl.framework.tools.arguments.org.campagnelab.dl.framework.tools.arguments.AbstractTool

org.campagnelab.dl.framework.tools.arguments.org.campagnelab.dl.framework.tools.arguments.ConditionRecordingTool

org.campagnelab.dl.framework.tools.arguments.org.campagnelab.dl.framework.tools.arguments.ModelConditionHelper

org.campagnelab.dl.framework.tools.arguments.org.campagnelab.dl.framework.tools.arguments.RecordingToolArguments

org.campagnelab.dl.framework.tools.arguments.org.campagnelab.dl.framework.tools.arguments.ToolArguments

org.campagnelab.dl.framework.training

org.campagnelab.dl.framework.training.org.campagnelab.dl.framework.training.ParallelTrainerOnGPU

org.campagnelab.dl.framework.training.org.campagnelab.dl.framework.training.SequentialTrainer

org.campagnelab.dl.framework.training.org.campagnelab.dl.framework.training.Trainer

org.campagnelab.dl.somatic.genotypes

org.campagnelab.dl.somatic.genotypes.org.campagnelab.dl.somatic.genotypes.BaseGenotypeCountFactory

org.campagnelab.dl.somatic.genotypes.org.campagnelab.dl.somatic.genotypes.GenotypeCountFactory

org.campagnelab.dl.somatic.intermediaries

org.campagnelab.dl.somatic.intermediaries.org.campagnelab.dl.somatic.intermediaries.FilteredNonFiltered

org.campagnelab.dl.somatic.intermediaries.org.campagnelab.dl.somatic.intermediaries.FirstSimulationStrategy

org.campagnelab.dl.somatic.intermediaries.org.campagnelab.dl.somatic.intermediaries.Intermediary

org.campagnelab.dl.somatic.intermediaries.org.campagnelab.dl.somatic.intermediaries.OneSampleCanonicalSimulationStrategy

org.campagnelab.dl.somatic.intermediaries.org.campagnelab.dl.somatic.intermediaries.QuickConcatArguments

org.campagnelab.dl.somatic.intermediaries.org.campagnelab.dl.somatic.intermediaries.Randomizer

org.campagnelab.dl.somatic.intermediaries.org.campagnelab.dl.somatic.intermediaries.SimulationCharacteristics

org.campagnelab.dl.somatic.intermediaries.org.campagnelab.dl.somatic.intermediaries.SimulationStrategy

org.campagnelab.dl.somatic.intermediaries.org.campagnelab.dl.somatic.intermediaries.SimulationStrategyImplTrio

org.campagnelab.dl.somatic.intermediaries.org.campagnelab.dl.somatic.intermediaries.TwoSampleCanonicalSimulationStrategy

org.campagnelab.dl.somatic.learning

org.campagnelab.dl.somatic.learning.org.campagnelab.dl.somatic.learning.AUCLossCalculator

org.campagnelab.dl.somatic.learning.org.campagnelab.dl.somatic.learning.AbstractPredictMutations

org.campagnelab.dl.somatic.learning.org.campagnelab.dl.somatic.learning.PredictMutations

org.campagnelab.dl.somatic.learning.org.campagnelab.dl.somatic.learning.PredictionArguments

org.campagnelab.dl.somatic.learning.org.campagnelab.dl.somatic.learning.SomaticTrainer

org.campagnelab.dl.somatic.learning.org.campagnelab.dl.somatic.learning.SomaticTrainingArguments

org.campagnelab.dl.somatic.learning.org.campagnelab.dl.somatic.learning.TrainModelS

org.campagnelab.dl.somatic.learning.org.campagnelab.dl.somatic.learning.TrainSomaticModel

org.campagnelab.dl.somatic.learning.org.campagnelab.dl.somatic.learning.TrainSomaticModelErrorSampling

org.campagnelab.dl.somatic.learning.org.campagnelab.dl.somatic.learning.TrainSomaticModelOnGPU

org.campagnelab.dl.somatic.learning.architecture

org.campagnelab.dl.somatic.learning.architecture.org.campagnelab.dl.somatic.learning.architecture.AbstractNeuralNetAssembler

org.campagnelab.dl.somatic.learning.architecture.org.campagnelab.dl.somatic.learning.architecture.CalibrationAssembler

org.campagnelab.dl.somatic.learning.architecture.org.campagnelab.dl.somatic.learning.architecture.EStatusListener

org.campagnelab.dl.somatic.learning.architecture.org.campagnelab.dl.somatic.learning.architecture.SixDenseLayers

org.campagnelab.dl.somatic.learning.architecture.org.campagnelab.dl.somatic.learning.architecture.SixDenseLayersForGPU

org.campagnelab.dl.somatic.learning.architecture.org.campagnelab.dl.somatic.learning.architecture.SixDenseLayersNarrower

org.campagnelab.dl.somatic.learning.architecture.org.campagnelab.dl.somatic.learning.architecture.SixDenseLayersNarrower2

org.campagnelab.dl.somatic.learning.architecture.org.campagnelab.dl.somatic.learning.architecture.SixDenseLayersNarrower2BatchNormalization

org.campagnelab.dl.somatic.learning.architecture.org.campagnelab.dl.somatic.learning.architecture.SixDenseLayersNarrower3

org.campagnelab.dl.somatic.learning.architecture.org.campagnelab.dl.somatic.learning.architecture.ThreeDenseLayers

org.campagnelab.dl.somatic.learning.architecture.graphs

org.campagnelab.dl.somatic.learning.architecture.graphs.org.campagnelab.dl.somatic.learning.architecture.graphs.SixDenseLayersNarrower2

org.campagnelab.dl.somatic.learning.architecture.graphs.org.campagnelab.dl.somatic.learning.architecture.graphs.SixDenseLayersNarrower2WithFrequency

org.campagnelab.dl.somatic.learning.architecture.graphs.org.campagnelab.dl.somatic.learning.architecture.graphs.SixDenseLayersNarrower2WithFrequencyAndBase

org.campagnelab.dl.somatic.learning.calibrate

org.campagnelab.dl.somatic.learning.calibrate.org.campagnelab.dl.somatic.learning.calibrate.CalibrateModelOutput

org.campagnelab.dl.somatic.learning.calibrate.org.campagnelab.dl.somatic.learning.calibrate.CalibratingModel

org.campagnelab.dl.somatic.learning.domains

org.campagnelab.dl.somatic.learning.domains.org.campagnelab.dl.somatic.learning.domains.IsBaseMutatedInterpreter

org.campagnelab.dl.somatic.learning.domains.org.campagnelab.dl.somatic.learning.domains.SomaticFrequencyInterpreter

org.campagnelab.dl.somatic.learning.domains.org.campagnelab.dl.somatic.learning.domains.SomaticMutationDomainDescriptor

org.campagnelab.dl.somatic.learning.domains.predictions

org.campagnelab.dl.somatic.learning.domains.predictions.org.campagnelab.dl.somatic.learning.domains.predictions.IsMutatedBasePrediction

org.campagnelab.dl.somatic.learning.domains.predictions.org.campagnelab.dl.somatic.learning.domains.predictions.IsMutatedPrediction

org.campagnelab.dl.somatic.learning.domains.predictions.org.campagnelab.dl.somatic.learning.domains.predictions.IsSomaticMutationInterpreter

org.campagnelab.dl.somatic.learning.domains.predictions.org.campagnelab.dl.somatic.learning.domains.predictions.SomaticFrequencyPrediction

org.campagnelab.dl.somatic.learning.features

org.campagnelab.dl.somatic.learning.features.org.campagnelab.dl.somatic.learning.features.Features

org.campagnelab.dl.somatic.learning.iterators

org.campagnelab.dl.somatic.learning.iterators.org.campagnelab.dl.somatic.learning.iterators.BaseInformationConcatIterator

org.campagnelab.dl.somatic.learning.iterators.org.campagnelab.dl.somatic.learning.iterators.BaseInformationIterator

org.campagnelab.dl.somatic.learning.iterators.org.campagnelab.dl.somatic.learning.iterators.CachedConcatIterator

org.campagnelab.dl.somatic.learning.iterators.org.campagnelab.dl.somatic.learning.iterators.FirstNIterator

org.campagnelab.dl.somatic.learning.iterators.org.campagnelab.dl.somatic.learning.iterators.MultiDataSetRecordIterator

org.campagnelab.dl.somatic.learning.iterators.org.campagnelab.dl.somatic.learning.iterators.NamedCachingDataSetIterator

org.campagnelab.dl.somatic.learning.iterators.org.campagnelab.dl.somatic.learning.iterators.NamedDataSetIterator

org.campagnelab.dl.somatic.learning.iterators.org.campagnelab.dl.somatic.learning.iterators.SBIRecordIterator

org.campagnelab.dl.somatic.learning.iterators.org.campagnelab.dl.somatic.learning.iterators.SamplingDataset

org.campagnelab.dl.somatic.learning.iterators.org.campagnelab.dl.somatic.learning.iterators.SamplingIterator

org.campagnelab.dl.somatic.learning.performance

org.campagnelab.dl.somatic.learning.performance.org.campagnelab.dl.somatic.learning.performance.MeasurePerformance

org.campagnelab.dl.somatic.mappers

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.AbstractFeatureMapper

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.BinaryFeatureMapper

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.CategoryFeatureMapper

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.DensityMapper

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperFT

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV10

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV11

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV12

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV13

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV14

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV15

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV16

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV17

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV18

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV19

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV2

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV20

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV21

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV22

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV23

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV24

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV25

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV3

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV3S

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV3SOld

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV4

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV5

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV6

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV7

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV8

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV9

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV9_2

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperVT

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FlipSamplesFeatureMapper

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FractionDifferences

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FractionDifferences2

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FractionDifferences3

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FractionDifferences4

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FractionGenotypeCount

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.GenomicContextMapper

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.GenomicPositionDiscreteMapper

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.GenomicPositionMapper

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.GenotypeCount

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.IndelFeatures

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.IndelGenotypeCount

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.IsBaseMutatedMapper

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.IsSomaticMutationMapper

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.MagnitudeFeatures

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.MagnitudeFeatures2

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.MagnitudeFeatures3

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.NamingConcatFeatureMapper

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.NoMasksLabelMapper

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.PositiveControlFeatureMapper

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.QualityFeatures

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.QualityGenotypeCount

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.ReadIndexFeatures

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.ReadIndexFeaturesFix

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.ReadIndexWithCounts

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.SimpleFeatureCalculator

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.SomaticFrequencyLabelMapper

org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.SortedGenotypeAgreementMapper

org.campagnelab.dl.somatic.mappers.functional

org.campagnelab.dl.somatic.mappers.functional.org.campagnelab.dl.somatic.mappers.functional.TraversalHelper

org.campagnelab.dl.somatic.mappers.trio

org.campagnelab.dl.somatic.mappers.trio.org.campagnelab.dl.somatic.mappers.trio.AbstractFeatureMapperTrio

org.campagnelab.dl.somatic.mappers.trio.org.campagnelab.dl.somatic.mappers.trio.FeatureMapperV18Trio

org.campagnelab.dl.somatic.mappers.trio.org.campagnelab.dl.somatic.mappers.trio.FractionDifferences4Trio

org.campagnelab.dl.somatic.mappers.trio.org.campagnelab.dl.somatic.mappers.trio.IndelFeaturesTrio

org.campagnelab.dl.somatic.mappers.trio.org.campagnelab.dl.somatic.mappers.trio.MagnitudeFeatures2Trio

org.campagnelab.dl.somatic.mappers.trio.org.campagnelab.dl.somatic.mappers.trio.ReadIndexFeaturesTrio

org.campagnelab.dl.somatic.mappers.trio.org.campagnelab.dl.somatic.mappers.trio.SimpleFeatureCalculatorTrio

org.campagnelab.dl.somatic.predictions

org.campagnelab.dl.somatic.predictions.org.campagnelab.dl.somatic.predictions.DLSomaticPredictor

org.campagnelab.dl.somatic.predictions.org.campagnelab.dl.somatic.predictions.SomaticModel

org.campagnelab.dl.somatic.storage

org.campagnelab.dl.somatic.storage.org.campagnelab.dl.somatic.storage.DualReader

org.campagnelab.dl.somatic.storage.org.campagnelab.dl.somatic.storage.FeatureCollector

org.campagnelab.dl.somatic.storage.org.campagnelab.dl.somatic.storage.ParquetPrinter

org.campagnelab.dl.somatic.storage.org.campagnelab.dl.somatic.storage.RecordIterable

org.campagnelab.dl.somatic.storage.org.campagnelab.dl.somatic.storage.RecordReader

org.campagnelab.dl.somatic.storage.org.campagnelab.dl.somatic.storage.RecordReaderI

org.campagnelab.dl.somatic.storage.org.campagnelab.dl.somatic.storage.RecordWriter

org.campagnelab.dl.somatic.tools

org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.AddCalls

org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.AddCallsArguments

org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.CombineWithGoldStandard

org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.CombineWithGoldStandardArguments

org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.MapFeatures

org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.MapFeaturesS

org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.Mutate

org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.MutateArguments

org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.PredictS

org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.QuickConcat

org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.Randomize

org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.RandomizerArguments

org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.ShowS

org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.SomaticMapFeaturesArguments

org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.SomaticShowArguments

org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.Split

org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.SplitArguments

org.campagnelab.dl.somatic.util

org.campagnelab.dl.somatic.util.org.campagnelab.dl.somatic.util.ErrorRecord

org.campagnelab.dl.somatic.util.org.campagnelab.dl.somatic.util.HitBoundedPriorityQueue

org.campagnelab.dl.somatic.utils

org.campagnelab.dl.somatic.utils.org.campagnelab.dl.somatic.utils.BayesCalibrator

org.campagnelab.dl.somatic.utils.org.campagnelab.dl.somatic.utils.CalcCalibrator

org.campagnelab.dl.somatic.utils.org.campagnelab.dl.somatic.utils.FDREstimator

org.campagnelab.dl.somatic.utils.org.campagnelab.dl.somatic.utils.ProtoPredictor