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Files of the artifact genotype version 1.4.0 from the group org.campagnelab.dl.

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Artifact genotype
Group org.campagnelab.dl
Version 1.4.0
Last update 15. November 2017
Organization not specified
URL Not specified
License not specified
Dependencies amount 0
Dependencies No dependencies
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Source code of genotype version 1.4.0

META-INF

META-INF.META-INF.MANIFEST.MF

META-INF.maven.org.campagnelab.dl.genotype

META-INF.maven.org.campagnelab.dl.genotype.META-INF.maven.org.campagnelab.dl.genotype.pom.properties

META-INF.maven.org.campagnelab.dl.genotype.META-INF.maven.org.campagnelab.dl.genotype.pom.xml

META-INF.services

META-INF.services.META-INF.services.org.campagnelab.goby.predictions.GenotypePredictor

org.campagnelab.dl.genotype.helpers

org.campagnelab.dl.genotype.helpers.org.campagnelab.dl.genotype.helpers.AddTrueGenotypeHelper

org.campagnelab.dl.genotype.helpers.org.campagnelab.dl.genotype.helpers.GenotypeHelper

org.campagnelab.dl.genotype.learning

org.campagnelab.dl.genotype.learning.org.campagnelab.dl.genotype.learning.GenotypeTrainingArguments

org.campagnelab.dl.genotype.learning.org.campagnelab.dl.genotype.learning.TrainModelG

org.campagnelab.dl.genotype.learning.architecture.graphs

org.campagnelab.dl.genotype.learning.architecture.graphs.org.campagnelab.dl.genotype.learning.architecture.graphs.CombinedGenotypeAssembler

org.campagnelab.dl.genotype.learning.architecture.graphs.org.campagnelab.dl.genotype.learning.architecture.graphs.FeedForwardDenseLayerAssembler

org.campagnelab.dl.genotype.learning.architecture.graphs.org.campagnelab.dl.genotype.learning.architecture.graphs.GenotypeAssembler

org.campagnelab.dl.genotype.learning.architecture.graphs.org.campagnelab.dl.genotype.learning.architecture.graphs.GenotypeSegmentsLSTM

org.campagnelab.dl.genotype.learning.architecture.graphs.org.campagnelab.dl.genotype.learning.architecture.graphs.GenotypeSixDenseLayersNarrower2

org.campagnelab.dl.genotype.learning.architecture.graphs.org.campagnelab.dl.genotype.learning.architecture.graphs.GenotypeSixDenseLayersWithIndelLSTM

org.campagnelab.dl.genotype.learning.architecture.graphs.org.campagnelab.dl.genotype.learning.architecture.graphs.GenotypeSixDenseLayersWithIndelLSTMAggregate

org.campagnelab.dl.genotype.learning.architecture.graphs.org.campagnelab.dl.genotype.learning.architecture.graphs.NumDistinctAlleleAssembler

org.campagnelab.dl.genotype.learning.architecture.graphs.org.campagnelab.dl.genotype.learning.architecture.graphs.SoftmaxAlleleLabelAssembler

org.campagnelab.dl.genotype.learning.domains

org.campagnelab.dl.genotype.learning.domains.org.campagnelab.dl.genotype.learning.domains.GenotypeDomainDescriptor

org.campagnelab.dl.genotype.learning.domains.org.campagnelab.dl.genotype.learning.domains.GenotypeSegmentDomainDescriptor

org.campagnelab.dl.genotype.learning.domains.org.campagnelab.dl.genotype.learning.domains.NumDistinctAllelesInterpreter

org.campagnelab.dl.genotype.learning.domains.org.campagnelab.dl.genotype.learning.domains.NumDistinctAllelesOutputLayerPrediction

org.campagnelab.dl.genotype.learning.domains.org.campagnelab.dl.genotype.learning.domains.SegmentMetaDataInterpreter

org.campagnelab.dl.genotype.learning.domains.org.campagnelab.dl.genotype.learning.domains.SoftmaxGenotypeInterpreter

org.campagnelab.dl.genotype.learning.domains.predictions

org.campagnelab.dl.genotype.learning.domains.predictions.org.campagnelab.dl.genotype.learning.domains.predictions.CombinedOutputLayerInterpreter

org.campagnelab.dl.genotype.learning.domains.predictions.org.campagnelab.dl.genotype.learning.domains.predictions.CombinedOutputLayerRefInterpreter

org.campagnelab.dl.genotype.learning.domains.predictions.org.campagnelab.dl.genotype.learning.domains.predictions.HomozygousInterpreter

org.campagnelab.dl.genotype.learning.domains.predictions.org.campagnelab.dl.genotype.learning.domains.predictions.HomozygousPrediction

org.campagnelab.dl.genotype.learning.domains.predictions.org.campagnelab.dl.genotype.learning.domains.predictions.SingleGenotypeInterpreter

org.campagnelab.dl.genotype.learning.domains.predictions.org.campagnelab.dl.genotype.learning.domains.predictions.SingleGenotypePrediction

org.campagnelab.dl.genotype.learning.domains.predictions.org.campagnelab.dl.genotype.learning.domains.predictions.SortingCountInterpreter

org.campagnelab.dl.genotype.learning.domains.predictions.org.campagnelab.dl.genotype.learning.domains.predictions.TrueGenotypeOutputLayerInterpreter

org.campagnelab.dl.genotype.mappers

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.CeilingNormalizationMapper

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.CombinedLabelsMapper

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.CombinedLabelsMapperRef

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.CountReorderingMapper

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.CountSortingLabelMapper

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeFeatureMapper

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperLSTM

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperLSTMAllStrands

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV1

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV10

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV11

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV12

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV13

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV14

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV15

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV16

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV17

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV18

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV19

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV2

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV20

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV20FixRef

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV21

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV22

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV23

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV24

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV25

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV26

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV27

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV28

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV29

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV3

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV30

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV31

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV32

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV33

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV34

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV35

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV36

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV37

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV38

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV4

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV5

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV7

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV8

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.GenotypeMapperV9

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.HomozygousLabelsMapper

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.InverseNormalizationMapper

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.IsIndelMapper

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.MatchesReferenceMapper

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.MetaDataLabelMapper

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.NaiveNumAlleleMapper

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.NumDistinctAllelesLabelMapper

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.OneSampleMapperUnsortedV1

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.OneSampleMapperUnsortedV2

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.OriginalGobyCountIndexMapper

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.RecordCountSortHelper

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.RecordCountSortingLabelMapperImpl

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.SegmentMetaDataLabelMapper

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.SingleBaseFeatureMapperV1

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.SingleBaseGenotypeMapperV1

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.SingleBaseLabelMapperV1

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.SingleBaseMapper

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.SingleGenoTypeCountMapper

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.SingleGenotypeLabelMapper

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.SingleReadIndexCountMapper

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.SoftmaxLabelMapper

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.SomaticFeatureMapper1

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.SomaticFeatureMapper2

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.TrueGenotypeLSTMDecodingFeatureMapper

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.TrueGenotypeLSTMLabelMapper

org.campagnelab.dl.genotype.mappers.org.campagnelab.dl.genotype.mappers.VariantTypeMapper

org.campagnelab.dl.genotype.performance

org.campagnelab.dl.genotype.performance.org.campagnelab.dl.genotype.performance.AccuracyHelper

org.campagnelab.dl.genotype.performance.org.campagnelab.dl.genotype.performance.AccuracySegmentAccumulator

org.campagnelab.dl.genotype.performance.org.campagnelab.dl.genotype.performance.AlleleAccuracyHelper

org.campagnelab.dl.genotype.performance.org.campagnelab.dl.genotype.performance.BEDHelper

org.campagnelab.dl.genotype.performance.org.campagnelab.dl.genotype.performance.GenotypeTrainingPerformanceHelper

org.campagnelab.dl.genotype.performance.org.campagnelab.dl.genotype.performance.GenotypeTrainingPerformanceHelperWithAUC

org.campagnelab.dl.genotype.performance.org.campagnelab.dl.genotype.performance.IndelAccuracySegmentAccumulator

org.campagnelab.dl.genotype.performance.org.campagnelab.dl.genotype.performance.SegmentGenotypePredictionTest

org.campagnelab.dl.genotype.performance.org.campagnelab.dl.genotype.performance.SegmentPerformanceMetricDescriptor

org.campagnelab.dl.genotype.performance.org.campagnelab.dl.genotype.performance.SegmentStatsAccumulator

org.campagnelab.dl.genotype.performance.org.campagnelab.dl.genotype.performance.SegmentTrainingPerformanceHelper

org.campagnelab.dl.genotype.performance.org.campagnelab.dl.genotype.performance.StatsAccumulator

org.campagnelab.dl.genotype.predictions

org.campagnelab.dl.genotype.predictions.org.campagnelab.dl.genotype.predictions.AbstractGenotypePrediction

org.campagnelab.dl.genotype.predictions.org.campagnelab.dl.genotype.predictions.AggregatedSoftmaxGenotypePrediction

org.campagnelab.dl.genotype.predictions.org.campagnelab.dl.genotype.predictions.CombinedGenotypePrediction

org.campagnelab.dl.genotype.predictions.org.campagnelab.dl.genotype.predictions.CombinedOutputLayerPrediction

org.campagnelab.dl.genotype.predictions.org.campagnelab.dl.genotype.predictions.CombinedWithIsVariantGenotypePrediction

org.campagnelab.dl.genotype.predictions.org.campagnelab.dl.genotype.predictions.DLGenotypePredictor

org.campagnelab.dl.genotype.predictions.org.campagnelab.dl.genotype.predictions.FormatIndelVCF

org.campagnelab.dl.genotype.predictions.org.campagnelab.dl.genotype.predictions.GenotypeModel

org.campagnelab.dl.genotype.predictions.org.campagnelab.dl.genotype.predictions.GenotypePrediction

org.campagnelab.dl.genotype.predictions.org.campagnelab.dl.genotype.predictions.GenotypeProtoPredictor

org.campagnelab.dl.genotype.predictions.org.campagnelab.dl.genotype.predictions.IsVariantInterpreter

org.campagnelab.dl.genotype.predictions.org.campagnelab.dl.genotype.predictions.IsVariantPrediction

org.campagnelab.dl.genotype.predictions.org.campagnelab.dl.genotype.predictions.MetaDataInterpreter

org.campagnelab.dl.genotype.predictions.org.campagnelab.dl.genotype.predictions.MetadataPrediction

org.campagnelab.dl.genotype.predictions.org.campagnelab.dl.genotype.predictions.NumDistinctAlleleGenotypePrediction

org.campagnelab.dl.genotype.predictions.org.campagnelab.dl.genotype.predictions.NumDistinctAlleleWithIsVariantGenotypePrediction

org.campagnelab.dl.genotype.predictions.org.campagnelab.dl.genotype.predictions.SegmentGenotypePrediction

org.campagnelab.dl.genotype.predictions.org.campagnelab.dl.genotype.predictions.SegmentMetaData

org.campagnelab.dl.genotype.predictions.org.campagnelab.dl.genotype.predictions.SegmentPrediction

org.campagnelab.dl.genotype.predictions.org.campagnelab.dl.genotype.predictions.SegmentPredictionInterpreter

org.campagnelab.dl.genotype.predictions.org.campagnelab.dl.genotype.predictions.SoftmaxGenotypePrediction

org.campagnelab.dl.genotype.predictions.org.campagnelab.dl.genotype.predictions.TrueGenotypeOutputLayerPrediction

org.campagnelab.dl.genotype.predictions.org.campagnelab.dl.genotype.predictions.TrueGenotypePrediction

org.campagnelab.dl.genotype.segments

org.campagnelab.dl.genotype.segments.org.campagnelab.dl.genotype.segments.FillInFeaturesFunction

org.campagnelab.dl.genotype.segments.org.campagnelab.dl.genotype.segments.FormatterCountHelper

org.campagnelab.dl.genotype.segments.org.campagnelab.dl.genotype.segments.MyFillInFeaturesFunction

org.campagnelab.dl.genotype.segments.org.campagnelab.dl.genotype.segments.PostProcessSegmentFunction

org.campagnelab.dl.genotype.segments.org.campagnelab.dl.genotype.segments.RecordList

org.campagnelab.dl.genotype.segments.org.campagnelab.dl.genotype.segments.Segment

org.campagnelab.dl.genotype.segments.org.campagnelab.dl.genotype.segments.SegmentAdapter

org.campagnelab.dl.genotype.segments.org.campagnelab.dl.genotype.segments.SegmentHelper

org.campagnelab.dl.genotype.segments.org.campagnelab.dl.genotype.segments.SegmentLabelMapper

org.campagnelab.dl.genotype.segments.org.campagnelab.dl.genotype.segments.SegmentUtil

org.campagnelab.dl.genotype.segments.org.campagnelab.dl.genotype.segments.SingleCandidateIndelSegment

org.campagnelab.dl.genotype.segments.org.campagnelab.dl.genotype.segments.SnpOnlyPostProcessSegmentFunction

org.campagnelab.dl.genotype.segments.org.campagnelab.dl.genotype.segments.WithIndelsPostProcessSegmentFunction

org.campagnelab.dl.genotype.segments.splitting

org.campagnelab.dl.genotype.segments.splitting.org.campagnelab.dl.genotype.segments.splitting.NoSplitStrategy

org.campagnelab.dl.genotype.segments.splitting.org.campagnelab.dl.genotype.segments.splitting.SingleCandidateIndelSplitStrategy

org.campagnelab.dl.genotype.segments.splitting.org.campagnelab.dl.genotype.segments.splitting.SplitStrategy

org.campagnelab.dl.genotype.storage

org.campagnelab.dl.genotype.storage.org.campagnelab.dl.genotype.storage.SegmentReader

org.campagnelab.dl.genotype.storage.org.campagnelab.dl.genotype.storage.SegmentWriter

org.campagnelab.dl.genotype.tools

org.campagnelab.dl.genotype.tools.org.campagnelab.dl.genotype.tools.AddTrueGenotypes

org.campagnelab.dl.genotype.tools.org.campagnelab.dl.genotype.tools.AddTrueGenotypesArguments

org.campagnelab.dl.genotype.tools.org.campagnelab.dl.genotype.tools.AddTrueGenotypesMultiThreaded

org.campagnelab.dl.genotype.tools.org.campagnelab.dl.genotype.tools.DebugGenotype

org.campagnelab.dl.genotype.tools.org.campagnelab.dl.genotype.tools.DebugGenotypeArguments

org.campagnelab.dl.genotype.tools.org.campagnelab.dl.genotype.tools.DownSampleGenotypeArguments

org.campagnelab.dl.genotype.tools.org.campagnelab.dl.genotype.tools.DownSampleGenotypes

org.campagnelab.dl.genotype.tools.org.campagnelab.dl.genotype.tools.FeatureNameArguments

org.campagnelab.dl.genotype.tools.org.campagnelab.dl.genotype.tools.FeatureNamePrinter

org.campagnelab.dl.genotype.tools.org.campagnelab.dl.genotype.tools.GenotypeShowArguments

org.campagnelab.dl.genotype.tools.org.campagnelab.dl.genotype.tools.PredictG

org.campagnelab.dl.genotype.tools.org.campagnelab.dl.genotype.tools.PredictGArguments

org.campagnelab.dl.genotype.tools.org.campagnelab.dl.genotype.tools.PrintSSIToText

org.campagnelab.dl.genotype.tools.org.campagnelab.dl.genotype.tools.PrintSSIToTextArguments

org.campagnelab.dl.genotype.tools.org.campagnelab.dl.genotype.tools.RemoveSnpsGenotypes

org.campagnelab.dl.genotype.tools.org.campagnelab.dl.genotype.tools.RemoveSnpsGenotypesArguments

org.campagnelab.dl.genotype.tools.org.campagnelab.dl.genotype.tools.SBISimulator

org.campagnelab.dl.genotype.tools.org.campagnelab.dl.genotype.tools.SBISimulatorArguments

org.campagnelab.dl.genotype.tools.org.campagnelab.dl.genotype.tools.SBIToSSIConverter

org.campagnelab.dl.genotype.tools.org.campagnelab.dl.genotype.tools.SBIToSSIConverterArguments

org.campagnelab.dl.genotype.tools.org.campagnelab.dl.genotype.tools.SSIQuickWriter

org.campagnelab.dl.genotype.tools.org.campagnelab.dl.genotype.tools.SSIQuickWriterArguments

org.campagnelab.dl.genotype.tools.org.campagnelab.dl.genotype.tools.SSIRandomizer

org.campagnelab.dl.genotype.tools.org.campagnelab.dl.genotype.tools.SSIRandomizerArguments

org.campagnelab.dl.genotype.tools.org.campagnelab.dl.genotype.tools.SbiStats

org.campagnelab.dl.genotype.tools.org.campagnelab.dl.genotype.tools.SbiStatsArguments

org.campagnelab.dl.genotype.tools.org.campagnelab.dl.genotype.tools.SegmentTrainingArguments

org.campagnelab.dl.genotype.tools.org.campagnelab.dl.genotype.tools.ShowG

org.campagnelab.dl.genotype.tools.org.campagnelab.dl.genotype.tools.TrainModelGS

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