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    Download somatic JAR 1.2 with all dependencies


    Files of the artifact somatic version 1.2 from the group org.campagnelab.dl.

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    Artifact somatic
    Group org.campagnelab.dl
    Version 1.2
    Last update 03. January 2017
    Tags: networks project mutations recognize data train neural
    Organization not specified
    URL Not specified
    License not specified
    Dependencies amount 11
    Dependencies fastutil, deeplearning4j-core, deeplearning4j-nlp, guava, commons-io, logback-classic, logback-core, protobuf-java, dsiutils, jcommander, commons-math3,
    There are maybe transitive dependencies!
    There is a newer version: 1.4.0
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    Source code of somatic version 1.2

    META-INF
    META-INF.META-INF.MANIFEST.MF
    META-INF.maven.org.campagnelab.dl.somatic
    META-INF.maven.org.campagnelab.dl.somatic.META-INF.maven.org.campagnelab.dl.somatic.pom.properties
    META-INF.maven.org.campagnelab.dl.somatic.META-INF.maven.org.campagnelab.dl.somatic.pom.xml
    META-INF.services
    META-INF.services.META-INF.services.org.campagnelab.goby.predictions.SomaticPredictor
    .PROFILE.txt
    .VERSION.txt
    org.campagnelab.dl.somatic.genotypes
    org.campagnelab.dl.somatic.genotypes.org.campagnelab.dl.somatic.genotypes.BaseGenotypeCountFactory
    org.campagnelab.dl.somatic.genotypes.org.campagnelab.dl.somatic.genotypes.GenotypeCountFactory
    org.campagnelab.dl.somatic.intermediaries
    org.campagnelab.dl.somatic.intermediaries.org.campagnelab.dl.somatic.intermediaries.FilteredNonFiltered
    org.campagnelab.dl.somatic.intermediaries.org.campagnelab.dl.somatic.intermediaries.FirstSimulationStrategy
    org.campagnelab.dl.somatic.intermediaries.org.campagnelab.dl.somatic.intermediaries.Intermediary
    org.campagnelab.dl.somatic.intermediaries.org.campagnelab.dl.somatic.intermediaries.OneSampleCanonicalSimulationStrategy
    org.campagnelab.dl.somatic.intermediaries.org.campagnelab.dl.somatic.intermediaries.QuickConcatArguments
    org.campagnelab.dl.somatic.intermediaries.org.campagnelab.dl.somatic.intermediaries.Randomizer
    org.campagnelab.dl.somatic.intermediaries.org.campagnelab.dl.somatic.intermediaries.SimulationCharacteristics
    org.campagnelab.dl.somatic.intermediaries.org.campagnelab.dl.somatic.intermediaries.SimulationStrategy
    org.campagnelab.dl.somatic.intermediaries.org.campagnelab.dl.somatic.intermediaries.ThreeSampleSimulationStrategyImplTrio
    org.campagnelab.dl.somatic.intermediaries.org.campagnelab.dl.somatic.intermediaries.TwoSampleCanonicalSimulationStrategy
    org.campagnelab.dl.somatic.intermediaries.org.campagnelab.dl.somatic.intermediaries.TwoSampleSimulationStrategyTrio
    org.campagnelab.dl.somatic.learning
    org.campagnelab.dl.somatic.learning.org.campagnelab.dl.somatic.learning.AUCLossCalculator
    org.campagnelab.dl.somatic.learning.org.campagnelab.dl.somatic.learning.AbstractPredictMutations
    org.campagnelab.dl.somatic.learning.org.campagnelab.dl.somatic.learning.PredictMutations
    org.campagnelab.dl.somatic.learning.org.campagnelab.dl.somatic.learning.PredictionArguments
    org.campagnelab.dl.somatic.learning.org.campagnelab.dl.somatic.learning.SomaticTrainer
    org.campagnelab.dl.somatic.learning.org.campagnelab.dl.somatic.learning.SomaticTrainingArguments
    org.campagnelab.dl.somatic.learning.org.campagnelab.dl.somatic.learning.TrainModelS
    org.campagnelab.dl.somatic.learning.org.campagnelab.dl.somatic.learning.TrainSomaticModel
    org.campagnelab.dl.somatic.learning.org.campagnelab.dl.somatic.learning.TrainSomaticModelErrorSampling
    org.campagnelab.dl.somatic.learning.org.campagnelab.dl.somatic.learning.TrainSomaticModelOnGPU
    org.campagnelab.dl.somatic.learning.architecture
    org.campagnelab.dl.somatic.learning.architecture.org.campagnelab.dl.somatic.learning.architecture.AbstractNeuralNetAssembler
    org.campagnelab.dl.somatic.learning.architecture.org.campagnelab.dl.somatic.learning.architecture.CalibrationAssembler
    org.campagnelab.dl.somatic.learning.architecture.org.campagnelab.dl.somatic.learning.architecture.EStatusListener
    org.campagnelab.dl.somatic.learning.architecture.org.campagnelab.dl.somatic.learning.architecture.SixDenseLayers
    org.campagnelab.dl.somatic.learning.architecture.org.campagnelab.dl.somatic.learning.architecture.SixDenseLayersForGPU
    org.campagnelab.dl.somatic.learning.architecture.org.campagnelab.dl.somatic.learning.architecture.SixDenseLayersNarrower
    org.campagnelab.dl.somatic.learning.architecture.org.campagnelab.dl.somatic.learning.architecture.SixDenseLayersNarrower2
    org.campagnelab.dl.somatic.learning.architecture.org.campagnelab.dl.somatic.learning.architecture.SixDenseLayersNarrower2BatchNormalization
    org.campagnelab.dl.somatic.learning.architecture.org.campagnelab.dl.somatic.learning.architecture.SixDenseLayersNarrower3
    org.campagnelab.dl.somatic.learning.architecture.org.campagnelab.dl.somatic.learning.architecture.ThreeDenseLayers
    org.campagnelab.dl.somatic.learning.architecture.graphs
    org.campagnelab.dl.somatic.learning.architecture.graphs.org.campagnelab.dl.somatic.learning.architecture.graphs.SixDenseLayersNarrower2
    org.campagnelab.dl.somatic.learning.architecture.graphs.org.campagnelab.dl.somatic.learning.architecture.graphs.SixDenseLayersNarrower2WithFrequency
    org.campagnelab.dl.somatic.learning.architecture.graphs.org.campagnelab.dl.somatic.learning.architecture.graphs.SixDenseLayersNarrower2WithFrequencyAndBase
    org.campagnelab.dl.somatic.learning.calibrate
    org.campagnelab.dl.somatic.learning.calibrate.org.campagnelab.dl.somatic.learning.calibrate.CalibrateModelOutput
    org.campagnelab.dl.somatic.learning.calibrate.org.campagnelab.dl.somatic.learning.calibrate.CalibratingModel
    org.campagnelab.dl.somatic.learning.domains
    org.campagnelab.dl.somatic.learning.domains.org.campagnelab.dl.somatic.learning.domains.IsBaseMutatedInterpreter
    org.campagnelab.dl.somatic.learning.domains.org.campagnelab.dl.somatic.learning.domains.SomaticFrequencyInterpreter
    org.campagnelab.dl.somatic.learning.domains.org.campagnelab.dl.somatic.learning.domains.SomaticMutationDomainDescriptor
    org.campagnelab.dl.somatic.learning.domains.predictions
    org.campagnelab.dl.somatic.learning.domains.predictions.org.campagnelab.dl.somatic.learning.domains.predictions.IsMutatedBasePrediction
    org.campagnelab.dl.somatic.learning.domains.predictions.org.campagnelab.dl.somatic.learning.domains.predictions.IsMutatedPrediction
    org.campagnelab.dl.somatic.learning.domains.predictions.org.campagnelab.dl.somatic.learning.domains.predictions.IsSomaticMutationInterpreter
    org.campagnelab.dl.somatic.learning.domains.predictions.org.campagnelab.dl.somatic.learning.domains.predictions.SomaticFrequencyPrediction
    org.campagnelab.dl.somatic.learning.features
    org.campagnelab.dl.somatic.learning.features.org.campagnelab.dl.somatic.learning.features.Features
    org.campagnelab.dl.somatic.learning.iterators
    org.campagnelab.dl.somatic.learning.iterators.org.campagnelab.dl.somatic.learning.iterators.BaseInformationConcatIterator
    org.campagnelab.dl.somatic.learning.iterators.org.campagnelab.dl.somatic.learning.iterators.BaseInformationIterator
    org.campagnelab.dl.somatic.learning.iterators.org.campagnelab.dl.somatic.learning.iterators.CachedConcatIterator
    org.campagnelab.dl.somatic.learning.iterators.org.campagnelab.dl.somatic.learning.iterators.FirstNIterator
    org.campagnelab.dl.somatic.learning.iterators.org.campagnelab.dl.somatic.learning.iterators.MultiDataSetRecordIterator
    org.campagnelab.dl.somatic.learning.iterators.org.campagnelab.dl.somatic.learning.iterators.NamedCachingDataSetIterator
    org.campagnelab.dl.somatic.learning.iterators.org.campagnelab.dl.somatic.learning.iterators.NamedDataSetIterator
    org.campagnelab.dl.somatic.learning.iterators.org.campagnelab.dl.somatic.learning.iterators.SBIRecordIterator
    org.campagnelab.dl.somatic.learning.iterators.org.campagnelab.dl.somatic.learning.iterators.SamplingDataset
    org.campagnelab.dl.somatic.learning.iterators.org.campagnelab.dl.somatic.learning.iterators.SamplingIterator
    org.campagnelab.dl.somatic.learning.performance
    org.campagnelab.dl.somatic.learning.performance.org.campagnelab.dl.somatic.learning.performance.MeasurePerformance
    org.campagnelab.dl.somatic.mappers
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.AbstractFeatureMapper
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.BamFlagMapper
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.BinaryFeatureMapper
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.CategoryFeatureMapper
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.DensityMapper
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.DensityMapperCapped
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperFT
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV10
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV11
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV12
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV13
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV14
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV15
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV16
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV17
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV18
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV19
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV2
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV20
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV21
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV22
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV23
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV24
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV25
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV3
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV3S
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV3SOld
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV4
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV5
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV6
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV7
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV8
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV9
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperV9_2
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FeatureMapperVT
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FlipSamplesFeatureMapper
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FractionDifferences
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FractionDifferences2
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FractionDifferences3
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FractionDifferences4
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.FractionGenotypeCount
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.GenomicContextMapper
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.GenomicPositionDiscreteMapper
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.GenomicPositionMapper
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.GenotypeCount
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.IndelFeatures
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.IndelGenotypeCount
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.IsBaseMutatedMapper
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.IsSomaticMutationMapper
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.MagnitudeFeatures
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.MagnitudeFeatures2
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.MagnitudeFeatures3
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.MappingFunctions
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.NamingConcatFeatureMapper
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.NoMasksLabelMapper
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.PositiveControlFeatureMapper
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.QualityFeatures
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.QualityGenotypeCount
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.ReadIndexFeatures
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.ReadIndexFeaturesFix
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.ReadIndexWithCounts
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.SimpleFeatureCalculator
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.SomaticFrequencyLabelMapper
    org.campagnelab.dl.somatic.mappers.org.campagnelab.dl.somatic.mappers.SortedGenotypeAgreementMapper
    org.campagnelab.dl.somatic.mappers.functional
    org.campagnelab.dl.somatic.mappers.functional.org.campagnelab.dl.somatic.mappers.functional.TraversalHelper
    org.campagnelab.dl.somatic.mappers.trio
    org.campagnelab.dl.somatic.mappers.trio.org.campagnelab.dl.somatic.mappers.trio.AbstractFeatureMapperTrio
    org.campagnelab.dl.somatic.mappers.trio.org.campagnelab.dl.somatic.mappers.trio.FeatureMapperV18Trio
    org.campagnelab.dl.somatic.mappers.trio.org.campagnelab.dl.somatic.mappers.trio.FeatureMapperV25Trio
    org.campagnelab.dl.somatic.mappers.trio.org.campagnelab.dl.somatic.mappers.trio.FractionDifferences4Trio
    org.campagnelab.dl.somatic.mappers.trio.org.campagnelab.dl.somatic.mappers.trio.IndelFeaturesTrio
    org.campagnelab.dl.somatic.mappers.trio.org.campagnelab.dl.somatic.mappers.trio.MagnitudeFeatures2Trio
    org.campagnelab.dl.somatic.mappers.trio.org.campagnelab.dl.somatic.mappers.trio.ReadIndexFeaturesTrio
    org.campagnelab.dl.somatic.mappers.trio.org.campagnelab.dl.somatic.mappers.trio.SimpleFeatureCalculatorTrio
    org.campagnelab.dl.somatic.predictions
    org.campagnelab.dl.somatic.predictions.org.campagnelab.dl.somatic.predictions.DLSomaticPredictor
    org.campagnelab.dl.somatic.predictions.org.campagnelab.dl.somatic.predictions.SomaticModel
    org.campagnelab.dl.somatic.storage
    org.campagnelab.dl.somatic.storage.org.campagnelab.dl.somatic.storage.DualReader
    org.campagnelab.dl.somatic.storage.org.campagnelab.dl.somatic.storage.FeatureCollector
    org.campagnelab.dl.somatic.storage.org.campagnelab.dl.somatic.storage.ProtobufPrinter
    org.campagnelab.dl.somatic.storage.org.campagnelab.dl.somatic.storage.RecordIterable
    org.campagnelab.dl.somatic.storage.org.campagnelab.dl.somatic.storage.RecordReader
    org.campagnelab.dl.somatic.storage.org.campagnelab.dl.somatic.storage.RecordReaderI
    org.campagnelab.dl.somatic.storage.org.campagnelab.dl.somatic.storage.RecordWriter
    org.campagnelab.dl.somatic.tools
    org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.AddCalls
    org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.AddCallsArguments
    org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.CombineWithGoldStandard
    org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.CombineWithGoldStandardArguments
    org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.MapFeatures
    org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.MapFeaturesS
    org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.Mutate
    org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.MutateArguments
    org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.PredictS
    org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.QuickConcat
    org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.Randomize
    org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.RandomizerArguments
    org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.ShowS
    org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.SomaticMapFeaturesArguments
    org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.SomaticShowArguments
    org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.Split
    org.campagnelab.dl.somatic.tools.org.campagnelab.dl.somatic.tools.SplitArguments
    org.campagnelab.dl.somatic.util
    org.campagnelab.dl.somatic.util.org.campagnelab.dl.somatic.util.ErrorRecord
    org.campagnelab.dl.somatic.util.org.campagnelab.dl.somatic.util.HitBoundedPriorityQueue
    org.campagnelab.dl.somatic.utils
    org.campagnelab.dl.somatic.utils.org.campagnelab.dl.somatic.utils.BayesCalibrator
    org.campagnelab.dl.somatic.utils.org.campagnelab.dl.somatic.utils.CalcCalibrator
    org.campagnelab.dl.somatic.utils.org.campagnelab.dl.somatic.utils.FDREstimator
    org.campagnelab.dl.somatic.utils.org.campagnelab.dl.somatic.utils.ProtoPredictor




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