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reach

Files of the artifact reach_2.11 version 1.3.2 from the group org.clulab.

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Artifact reach_2.11
Group org.clulab
Version 1.3.2
Last update 20. September 2016
Tags: reach
Organization org.clulab
URL https://github.com/clulab/reach
License Apache License, Version 2.0
Dependencies amount 15
Dependencies scala-library, bioresources, processors-main_2.11, processors-corenlp_2.11, processors-models_2.11, config, commons-io, paxtools-core, jline, lucene-core, lucene-analyzers-common, lucene-queryparser, nxmlreader_2.11, logback-classic, scala-logging_2.11,
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Source code of reach_2.11 version 1.3.2

META-INF

META-INF.META-INF.MANIFEST.MF

.application.conf

.input_example.csv

org.clulab

org.clulab.org.clulab.TypesafeConfigPropertyDefiner.scala

org.clulab.assembly

org.clulab.assembly.org.clulab.assembly.Assembler.scala

org.clulab.assembly.org.clulab.assembly.AssemblyManager.scala

org.clulab.assembly.org.clulab.assembly.AssemblyShell.scala

org.clulab.assembly.org.clulab.assembly.ParticipantFeatureTracker.scala

org.clulab.assembly.org.clulab.assembly.RunAssembly.scala

org.clulab.assembly.display

org.clulab.assembly.display.org.clulab.assembly.display.package.scala

org.clulab.assembly.export

org.clulab.assembly.export.org.clulab.assembly.export.AssemblyExporter.scala

org.clulab.assembly.export.org.clulab.assembly.export.AssemblyLink.scala

org.clulab.assembly

org.clulab.assembly.org.clulab.assembly.fbc.model

org.clulab.assembly.grammars

org.clulab.assembly.grammars.org.clulab.assembly.grammars.intersentential.yml

org.clulab.assembly.grammars.org.clulab.assembly.grammars.precedence.yml

org.clulab.assembly.grammars.org.clulab.assembly.grammars.tense_aspect.yml

org.clulab.assembly

org.clulab.assembly.org.clulab.assembly.package.scala

org.clulab.assembly.relations.classifier

org.clulab.assembly.relations.classifier.org.clulab.assembly.relations.classifier.AssemblyRelationClassifier.scala

org.clulab.assembly.relations.classifier.org.clulab.assembly.relations.classifier.ClassifyAssemblyRelations.scala

org.clulab.assembly.relations.classifier.org.clulab.assembly.relations.classifier.FeatureExtractor.scala

org.clulab.assembly.relations.classifier.org.clulab.assembly.relations.classifier.PathFinder.scala

org.clulab.assembly.relations.corpus

org.clulab.assembly.relations.corpus.org.clulab.assembly.relations.corpus.Corpus.scala

org.clulab.assembly.relations.corpus.org.clulab.assembly.relations.corpus.CorpusBuilder.scala

org.clulab.assembly.relations.corpus.org.clulab.assembly.relations.corpus.CorpusReader.scala

org.clulab.assembly.representations

org.clulab.assembly.representations.org.clulab.assembly.representations.Activation.scala

org.clulab.assembly.representations.org.clulab.assembly.representations.AssemblyModification.scala

org.clulab.assembly.representations.org.clulab.assembly.representations.Complex.scala

org.clulab.assembly.representations.org.clulab.assembly.representations.ComplexEvent.scala

org.clulab.assembly.representations.org.clulab.assembly.representations.Entity.scala

org.clulab.assembly.representations.org.clulab.assembly.representations.EntityEventRepresentation.scala

org.clulab.assembly.representations.org.clulab.assembly.representations.Event.scala

org.clulab.assembly.representations.org.clulab.assembly.representations.Regulation.scala

org.clulab.assembly.representations.org.clulab.assembly.representations.SimpleEntity.scala

org.clulab.assembly.representations.org.clulab.assembly.representations.SimpleEvent.scala

org.clulab.assembly.sieves

org.clulab.assembly.sieves.org.clulab.assembly.sieves.AssemblySieve.scala

org.clulab.assembly.sieves.org.clulab.assembly.sieves.Constraints.scala

org.clulab.assembly.sieves.org.clulab.assembly.sieves.Sieves.scala

org.clulab.coref

org.clulab.coref.org.clulab.coref.AntecedentSelector.scala

org.clulab.coref.org.clulab.coref.Coref.scala

org.clulab.coref.org.clulab.coref.CorefFlow.scala

org.clulab.coref.org.clulab.coref.CorefUtils.scala

org.clulab.coref.org.clulab.coref.Links.scala

org.clulab.demo.bio.documents

org.clulab.demo.bio.documents.org.clulab.demo.bio.documents.BIO-A-by-B-ubiq-of-C.txt

org.clulab.demo.bio.documents.org.clulab.demo.bio.documents.BIO-Binding.txt

org.clulab.demo.bio.documents.org.clulab.demo.bio.documents.BIO-EnteringTricomplex.txt

org.clulab.demo.bio.documents.org.clulab.demo.bio.documents.BIO-NegReg-Phospho.txt

org.clulab.demo.bio.documents.org.clulab.demo.bio.documents.BIO-PosReg-Phospho.txt

org.clulab.demo.bio.documents.org.clulab.demo.bio.documents.BIO-PosReg-Phospho2.txt

org.clulab.demo.bio.documents.org.clulab.demo.bio.documents.BIO-PosReg-withNegation.txt

org.clulab.demo.bio.documents.org.clulab.demo.bio.documents.PMC-3225393-03-Discussion-04.txt

org.clulab.demo.bio.documents.org.clulab.demo.bio.documents.PMID-15735718.txt

org.clulab.demo.bio.documents.org.clulab.demo.bio.documents.acl-2015-odin-paper-example.txt

org.clulab.demo.bio.documents.org.clulab.demo.bio.documents.acl-demo-coordinate-structures.txt

org.clulab.demo.bio.documents.org.clulab.demo.bio.documents.acl-demo-coref.txt

org.clulab.demo.bio.documents.org.clulab.demo.bio.documents.passage_4_PMC3651738.txt

org.clulab.demo.bio.documents.org.clulab.demo.bio.documents.passage_5_PMC3651738.txt

org.clulab.demo.bio.documents.org.clulab.demo.bio.documents.passage_6_PMC3515079.txt

org.clulab.demo.bio.inactive

org.clulab.demo.bio.inactive.org.clulab.demo.bio.inactive.PMC-3225393-01-Introduction-01.txt

org.clulab.demo.bio.inactive.org.clulab.demo.bio.inactive.PMC-3225393-03-Discussion-01.txt

org.clulab.demo.bio.inactive.org.clulab.demo.bio.inactive.PMID-16155345.txt

org.clulab.demo.bio.inactive.org.clulab.demo.bio.inactive.PMID-16641284.txt

org.clulab.demo.bio.inactive.org.clulab.demo.bio.inactive.PMID-16765349.txt

org.clulab.demo.bio.inactive.org.clulab.demo.bio.inactive.PMID-17332736.txt

org.clulab.demo.bio.inactive.org.clulab.demo.bio.inactive.passage_3_PMC3437993.txt

org.clulab.demo.bio.inactive.org.clulab.demo.bio.inactive.passage_7_PMC3515079.txt

org.clulab.demo.open.documents

org.clulab.demo.open.documents.org.clulab.demo.open.documents.coref-examples.txt

org.clulab.demo.open.documents.org.clulab.demo.open.documents.obama-simple-wikipedia.txt

org.clulab.demo.open.grammars

org.clulab.demo.open.grammars.org.clulab.demo.open.grammars.rules.yml

org.clulab.demo.open.grammars.org.clulab.demo.open.grammars.xp-surface.yml

org.clulab.reach

org.clulab.reach.org.clulab.reach.FriesEntry.scala

org.clulab.reach.org.clulab.reach.PaperReader.scala

org.clulab.reach.org.clulab.reach.ReachCLI.scala

org.clulab.reach.org.clulab.reach.ReachCSV.scala

org.clulab.reach.org.clulab.reach.ReachConstants.scala

org.clulab.reach.org.clulab.reach.ReachShell.scala

org.clulab.reach.org.clulab.reach.ReachSystem.scala

org.clulab.reach.org.clulab.reach.RuleReader.scala

org.clulab.reach.apis

org.clulab.reach.apis.org.clulab.reach.apis.Api.scala

org.clulab.reach.apis.org.clulab.reach.apis.ApiRuler.scala

org.clulab.reach.apis.org.clulab.reach.apis.Ruler.scala

org.clulab.reach.apis.open

org.clulab.reach.apis.open.org.clulab.reach.apis.open.OpenActions.scala

org.clulab.reach.apis.open.org.clulab.reach.apis.open.OpenSystem.scala

org.clulab.reach.biogrammar.context

org.clulab.reach.biogrammar.context.org.clulab.reach.biogrammar.context.context_relations.yml

org.clulab.reach.biogrammar.coref

org.clulab.reach.biogrammar.coref.org.clulab.reach.biogrammar.coref.alias_template.yml

org.clulab.reach.biogrammar.coref.org.clulab.reach.biogrammar.coref.generic_entities.yml

org.clulab.reach.biogrammar.coref.org.clulab.reach.biogrammar.coref.generic_events.yml

org.clulab.reach.biogrammar.entities

org.clulab.reach.biogrammar.entities.org.clulab.reach.biogrammar.entities.entities.yml

org.clulab.reach.biogrammar

org.clulab.reach.biogrammar.org.clulab.reach.biogrammar.entities_master.yml

org.clulab.reach.biogrammar.events

org.clulab.reach.biogrammar.events.org.clulab.reach.biogrammar.events.bind_events.yml

org.clulab.reach.biogrammar.events.org.clulab.reach.biogrammar.events.dehydrolysis_events.yml

org.clulab.reach.biogrammar.events.org.clulab.reach.biogrammar.events.early-pos-reg_template.yml

org.clulab.reach.biogrammar.events.org.clulab.reach.biogrammar.events.hydrolysis_events.yml

org.clulab.reach.biogrammar.events.org.clulab.reach.biogrammar.events.neg-reg-only_template.yml

org.clulab.reach.biogrammar.events.org.clulab.reach.biogrammar.events.neg-reg_template.yml

org.clulab.reach.biogrammar.events.org.clulab.reach.biogrammar.events.pos-act-only_template.yml

org.clulab.reach.biogrammar.events.org.clulab.reach.biogrammar.events.pos-reg-only_template.yml

org.clulab.reach.biogrammar.events.org.clulab.reach.biogrammar.events.pos-reg_template.yml

org.clulab.reach.biogrammar.events.org.clulab.reach.biogrammar.events.simple-event-auto_template.yml

org.clulab.reach.biogrammar.events.org.clulab.reach.biogrammar.events.simple-event_template.yml

org.clulab.reach.biogrammar.events.org.clulab.reach.biogrammar.events.translocation_events.yml

org.clulab.reach.biogrammar

org.clulab.reach.biogrammar.org.clulab.reach.biogrammar.events_master.yml

org.clulab.reach.biogrammar.inactive

org.clulab.reach.biogrammar.inactive.org.clulab.reach.biogrammar.inactive.degrad_events.yml

org.clulab.reach.biogrammar.inactive.org.clulab.reach.biogrammar.inactive.exchange_events.yml

org.clulab.reach.biogrammar.inactive.org.clulab.reach.biogrammar.inactive.hydrox_events.yml

org.clulab.reach.biogrammar.inactive.org.clulab.reach.biogrammar.inactive.phospho_events.yml

org.clulab.reach.biogrammar.inactive.org.clulab.reach.biogrammar.inactive.regulation_events.yml

org.clulab.reach.biogrammar.inactive.org.clulab.reach.biogrammar.inactive.transcription_events.yml

org.clulab.reach.biogrammar.inactive.org.clulab.reach.biogrammar.inactive.ubiq_events.yml

org.clulab.reach.biogrammar.modifications

org.clulab.reach.biogrammar.modifications.org.clulab.reach.biogrammar.modifications.modifications.yml

org.clulab.reach.biogrammar.modifications.org.clulab.reach.biogrammar.modifications.mutants.yml

org.clulab.reach.biogrammar

org.clulab.reach.biogrammar.org.clulab.reach.biogrammar.modifications_master.yml

org.clulab.reach.biogrammar.org.clulab.reach.biogrammar.taxonomy.yml

org.clulab.reach.brat

org.clulab.reach.brat.org.clulab.reach.brat.Annotation.scala

org.clulab.reach.brat.org.clulab.reach.brat.Brat.scala

org.clulab.reach.brat.org.clulab.reach.brat.package.scala

org.clulab.reach.context

org.clulab.reach.context.org.clulab.reach.context.Context.scala

org.clulab.reach.context.org.clulab.reach.context.ContextEngine.scala

org.clulab.reach.context.org.clulab.reach.context.ContextEngineFactory.scala

org.clulab.reach.context.org.clulab.reach.context.DummyContextEngine.scala

org.clulab.reach.context.org.clulab.reach.context.Policies.scala

org.clulab.reach.context.org.clulab.reach.context.RuleBasedEngine.scala

org.clulab.reach.context.org.clulab.reach.context.package.scala

org.clulab.reach.darpa

org.clulab.reach.darpa.org.clulab.reach.darpa.DarpaActions.scala

org.clulab.reach.darpa.org.clulab.reach.darpa.DarpaLinks.scala

org.clulab.reach.darpa.org.clulab.reach.darpa.HypothesisHandler.scala

org.clulab.reach.darpa.org.clulab.reach.darpa.MentionFilter.scala

org.clulab.reach.darpa.org.clulab.reach.darpa.NegationHandler.scala

org.clulab.reach.darpa.org.clulab.reach.darpa.OutputDegrader.scala

org.clulab.reach.display

org.clulab.reach.display.org.clulab.reach.display.package.scala

org.clulab.reach.extern.export

org.clulab.reach.extern.export.org.clulab.reach.extern.export.IncrementingId.scala

org.clulab.reach.extern.export.org.clulab.reach.extern.export.JsonOutputter.scala

org.clulab.reach.extern.export.org.clulab.reach.extern.export.MentionManager.scala

org.clulab.reach.extern.export.fries

org.clulab.reach.extern.export.fries.org.clulab.reach.extern.export.fries.FriesOutput.scala

org.clulab.reach.extern.export.indexcards

org.clulab.reach.extern.export.indexcards.org.clulab.reach.extern.export.indexcards.IndexCardOutput.scala

org.clulab.reach.extern.inward

org.clulab.reach.extern.inward.org.clulab.reach.extern.inward.KnowledgeBaseAccessor.scala

org.clulab.reach.fragmenter

org.clulab.reach.fragmenter.org.clulab.reach.fragmenter.Fragmenter.scala

org.clulab.reach.fragmenter.org.clulab.reach.fragmenter.Labeler.scala

org.clulab.reach.fragmenter.org.clulab.reach.fragmenter.package.scala

org.clulab.reach.grounding

org.clulab.reach.grounding.org.clulab.reach.grounding.AdHocIMKBFactory.scala

org.clulab.reach.grounding.org.clulab.reach.grounding.AzFailsafeKBML.scala

org.clulab.reach.grounding.org.clulab.reach.grounding.EntityChecker.scala

org.clulab.reach.grounding.org.clulab.reach.grounding.IMKBFamilyLookup.scala

org.clulab.reach.grounding.org.clulab.reach.grounding.IMKBFamilyMentionLookup.scala

org.clulab.reach.grounding.org.clulab.reach.grounding.IMKBLookup.scala

org.clulab.reach.grounding.org.clulab.reach.grounding.IMKBMentionLookup.scala

org.clulab.reach.grounding.org.clulab.reach.grounding.IMKBMetaInfo.scala

org.clulab.reach.grounding.org.clulab.reach.grounding.IMKBOrganCellTypeLookup.scala

org.clulab.reach.grounding.org.clulab.reach.grounding.IMKBOrganCellTypeMentionLookup.scala

org.clulab.reach.grounding.org.clulab.reach.grounding.IMKBProteinLookup.scala

org.clulab.reach.grounding.org.clulab.reach.grounding.IMKBProteinMentionLookup.scala

org.clulab.reach.grounding.org.clulab.reach.grounding.InMemoryKB.scala

org.clulab.reach.grounding.org.clulab.reach.grounding.KBAltLookup.scala

org.clulab.reach.grounding.org.clulab.reach.grounding.KBAltMentionLookup.scala

org.clulab.reach.grounding.org.clulab.reach.grounding.KBEntry.scala

org.clulab.reach.grounding.org.clulab.reach.grounding.KBKeyTransforms.scala

org.clulab.reach.grounding.org.clulab.reach.grounding.KBLookup.scala

org.clulab.reach.grounding.org.clulab.reach.grounding.KBMentionLookup.scala

org.clulab.reach.grounding.org.clulab.reach.grounding.KBResolution.scala

org.clulab.reach.grounding.org.clulab.reach.grounding.ReachContextKBLister.scala

org.clulab.reach.grounding.org.clulab.reach.grounding.ReachEntityLookup.scala

org.clulab.reach.grounding.org.clulab.reach.grounding.ReachGrounder.scala

org.clulab.reach.grounding.org.clulab.reach.grounding.ReachIMKBLookups.scala

org.clulab.reach.grounding.org.clulab.reach.grounding.ReachIMKBMentionLookups.scala

org.clulab.reach.grounding.org.clulab.reach.grounding.ReachKBConstants.scala

org.clulab.reach.grounding.org.clulab.reach.grounding.ReachKBKeyTransforms.scala

org.clulab.reach.grounding.org.clulab.reach.grounding.ReachKBUtils.scala

org.clulab.reach.grounding.org.clulab.reach.grounding.ReachMiscLookups.scala

org.clulab.reach.grounding.org.clulab.reach.grounding.ReverseLookupKB.scala

org.clulab.reach.grounding.org.clulab.reach.grounding.Speciated.scala

org.clulab.reach.grounding.org.clulab.reach.grounding.TsvIMKBFactory.scala

org.clulab.reach.grounding.org.clulab.reach.grounding.package.scala

org.clulab.reach.indexer

org.clulab.reach.indexer.org.clulab.reach.indexer.NxmlIndexer.scala

org.clulab.reach.indexer.org.clulab.reach.indexer.NxmlSearcher.scala

org.clulab.reach.mentions

org.clulab.reach.mentions.org.clulab.reach.mentions.Anaphoric.scala

org.clulab.reach.mentions.org.clulab.reach.mentions.BioMention.scala

org.clulab.reach.mentions.org.clulab.reach.mentions.CorefMention.scala

org.clulab.reach.mentions.org.clulab.reach.mentions.Display.scala

org.clulab.reach.mentions.org.clulab.reach.mentions.Grounding.scala

org.clulab.reach.mentions.org.clulab.reach.mentions.Modifications.scala

org.clulab.reach.mentions.org.clulab.reach.mentions.package.scala

org.clulab.reach.mentions.serialization.json

org.clulab.reach.mentions.serialization.json.org.clulab.reach.mentions.serialization.json.JSONSerializer.scala

org.clulab.reach.mentions.serialization.json.org.clulab.reach.mentions.serialization.json.package.scala

org.clulab.reach

org.clulab.reach.org.clulab.reach.package.scala

org.clulab.reach.utils

org.clulab.reach.utils.org.clulab.reach.utils.BratUtils.scala

org.clulab.reach.utils.org.clulab.reach.utils.DSVParser.scala

org.clulab.reach.utils.org.clulab.reach.utils.DependencyUtils.scala

org.clulab.reach.utils.org.clulab.reach.utils.FileReader.scala

org.clulab.reach.utils.org.clulab.reach.utils.PathFinder.scala

org.clulab.utils

org.clulab.utils.org.clulab.utils.DateUtils

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